Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 3.4e-186 654.8 325 100.0
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 4.0e-179 631.3 327 96.6
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 1.2e-178 629.8 325 96.3
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 2.4e-176 622.1 340 92.4
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 3.0e-174 615.1 340 91.2
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 4.8e-172 607.8 325 92.6
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 6.0e-167 590.9 325 90.2
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 3.7e-156 555.1 335 85.1
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 5.5e-152 541.2 313 86.3
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 3.0e-150 535.4 313 85.6
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 4.3e-149 531.6 313 85.0
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 1.1e-144 516.9 313 83.1
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 3.5e-130 468.8 320 75.9
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 1.6e-111 406.8 318 66.7
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 1.6e-103 380.2 319 62.4
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 6.8e-102 374.8 347 57.6
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 3.4e-101 372.5 314 60.2
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 5.4e-99 365.2 319 59.6
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 9.2e-99 364.4 318 58.5
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 2.3e-97 359.8 319 60.2
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 1.5e-96 357.1 319 60.2
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 1.9e-96 356.7 317 61.5
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 2.5e-96 356.3 319 60.5
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 5.2e-94 348.6 278 61.9
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 8.9e-94 347.8 323 56.7
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 4.4e-93 345.5 278 61.5
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 4.4e-93 345.5 314 58.6
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 7.5e-93 344.7 309 58.3
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 1.7e-92 343.6 313 56.5
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 4.9e-92 342.0 277 62.1
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 6.4e-92 341.7 313 56.2
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 8.3e-92 341.3 254 66.1
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 9.2e-91 337.8 230 69.6
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 1.2e-90 337.4 317 55.2
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 1.2e-90 337.4 314 58.0
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 1.6e-90 337.0 277 61.0
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 1.6e-90 337.0 380 50.3
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 2.7e-90 336.3 314 58.0
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 6.0e-90 335.1 277 61.4
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 1.0e-89 334.3 315 55.6
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.3e-89 334.0 291 57.7
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 8.6e-89 331.3 277 59.9
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 8.6e-89 331.3 319 55.8
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 1.1e-88 330.9 255 63.9
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 1.9e-88 330.1 317 54.6
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 2.5e-88 329.7 231 67.5
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.3e-88 329.3 291 57.7
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 7.3e-88 328.2 314 54.5
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 9.5e-88 327.8 323 55.4
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.8e-87 326.2 277 58.1
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 4.7e-87 325.5 277 59.2
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 6.2e-87 325.1 242 63.6
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 1.1e-86 324.3 235 67.2
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 1.8e-86 323.6 223 68.6
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.3e-86 323.2 296 57.1
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 5.2e-86 322.0 276 59.4
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 6.8e-86 321.6 272 59.2
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 6.8e-86 321.6 326 53.7
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 6.8e-86 321.6 233 65.2
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 8.9e-86 321.2 312 52.9
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 1.5e-85 320.5 216 69.0
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 1.7e-84 317.0 288 56.9
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 2.9e-84 316.2 280 57.9
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 2.4e-83 313.2 236 64.0
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 4.1e-83 312.4 300 56.0
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 5.4e-83 312.0 307 53.7
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 4.6e-82 308.9 342 50.6
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 3.0e-81 306.2 210 70.0
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 3.9e-81 305.8 321 52.6
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 3.9e-81 305.8 194 74.2
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 6.6e-81 305.1 201 70.6
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 1.4e-78 297.4 275 53.1
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 5.2e-78 295.4 306 52.3
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 1.2e-77 294.3 317 52.4
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 2.0e-77 293.5 276 53.3
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 7.6e-77 291.6 174 79.3
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 1.7e-76 290.4 288 54.2
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 6.4e-76 288.5 289 57.8
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 6.4e-76 288.5 275 55.3
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 3.5e-74 282.7 199 65.3
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 6.0e-74 282.0 269 56.9
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 1.5e-72 277.3 286 53.8
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 1.9e-72 276.9 294 52.4
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 6.2e-71 271.9 263 59.7
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 3.4e-69 266.2 296 50.0
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 1.7e-68 263.8 202 64.4
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 1.6e-63 247.3 288 49.0
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 4.0e-62 242.7 179 65.9
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 6.0e-58 228.8 299 45.2
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 3.9e-57 226.1 204 55.4
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 5.1e-57 225.7 167 64.7
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 1.8e-54 217.2 168 63.1
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 5.8e-53 212.2 380 36.6
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 1.4e-51 207.6 252 44.0
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 2.1e-50 203.8 214 47.2
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 9.6e-48 194.9 221 43.9
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 1.5e-45 187.6 156 59.6
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 5.8e-45 185.7 199 46.7
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 8.4e-44 181.8 188 52.7
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 2.3e-41 173.7 221 43.0
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 1.1e-40 171.4 159 57.2
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 3.3e-40 169.9 362 35.1
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 4.8e-39 166.0 261 40.6
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 2.4e-38 163.7 251 42.2
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 6.9e-38 162.2 129 62.8
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 7.6e-37 158.7 150 54.0
BolC1t02515H Brassica oleracea HOM05D004613 ORTHO05D006095 7.2e-35 152.1 111 72.1
C05p42320 Brassica napus HOM05D004613 ORTHO05D006095 3.3e-32 143.3 111 68.5
C04p20640 Brassica napus HOM05D004613 ORTHO05D006095 4.3e-32 142.9 82 86.6
BolC4t23591H Brassica oleracea HOM05D004613 ORTHO05D006095 4.3e-32 142.9 82 86.6
BolC5t32960H Brassica oleracea HOM05D004613 ORTHO05D006095 1.4e-30 137.9 83 83.1
C03p78440 Brassica napus HOM05D012085 ORTHO05D006095 5.3e-30 136.0 82 80.5
C09p29080 Brassica napus HOM05D004613 ORTHO05D006095 5.3e-30 136.0 111 65.8
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 1.0e-28 131.7 255 37.6
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 5.1e-25 119.4 67 82.1
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 6.7e-25 119.0 67 76.1
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 2.2e-23 114.0 204 32.4
BcaC04g22128 Brassica carinata HOM05D004613 ORTHO05D006095 3.7e-23 113.2 95 63.2
C09p23030 Brassica napus HOM05D004613 ORTHO05D006095 4.8e-23 112.8 97 61.9
C01p25640 Brassica napus HOM05D004613 ORTHO05D006095 4.1e-22 109.8 86 68.6
BolC4t23587H Brassica oleracea HOM05D004613 ORTHO05D006095 2.6e-21 107.1 58 87.9
BcaC09g50421 Brassica carinata HOM05D004613 ORTHO05D006095 1.0e-20 105.1 84 66.7
C07p27290 Brassica napus HOM05D004613 ORTHO05D040533 1.3e-20 104.8 59 84.7
BolC7t43257H Brassica oleracea HOM05D004613 ORTHO05D040533 1.3e-20 104.8 59 84.7
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 2.2e-20 104.0 55 90.9
BcaC07g37284 Brassica carinata HOM05D004613 ORTHO05D006095 2.9e-20 103.6 86 65.1
BolC8t47558H Brassica oleracea HOM05D004613 ORTHO05D006095 2.9e-20 103.6 86 65.1
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 3.6e-18 96.7 57 82.5
C03p71850 Brassica napus HOM05D004613 ORTHO05D006095 8.8e-17 92.0 56 78.6
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 1.1e-16 91.7 113 47.8
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 1.5e-16 91.3 49 87.8
C04p31600 Brassica napus HOM05D004613 ORTHO05D006095 1.5e-16 91.3 59 76.3
C02p33910 Brassica napus HOM05D004613 ORTHO05D006095 1.7e-15 87.8 86 57.0
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 1.7e-15 87.8 50 88.0
C09p20670 Brassica napus HOM05D004613 ORTHO05D006095 3.7e-15 86.7 56 78.6
C04p20620 Brassica napus HOM05D000249 ORTHO05D032228 2.6e-13 80.5 42 83.3
BcaB01g02574 Brassica carinata HOM05D001081 ORTHO05D004708 1.0e-12 78.6 51 74.5
BraA06t25731Z Brassica rapa HOM05D030286 ORTHO05D014940 2.9e-12 77.0 39 89.7
BcaC02g11915 Brassica carinata HOM05D004613 ORTHO05D014940 3.8e-12 76.6 40 85.0
BcaB02g10346 Brassica carinata HOM05D004613 ORTHO05D014940 1.9e-11 74.3 41 80.5
BolC2t08054H Brassica oleracea HOM05D004613 ORTHO05D014940 2.5e-11 73.9 41 78.0
C08p07130 Brassica napus HOM05D004613 ORTHO05D014940 5.5e-11 72.8 42 81.0
BcaC03g15600 Brassica carinata HOM05D008340 ORTHO05D014940 9.4e-11 72.0 39 82.1
BolC9t56574H Brassica oleracea HOM05D004613 ORTHO05D014940 9.4e-11 72.0 42 78.6
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 1.6e-10 71.2 85 43.5
C07p10570 Brassica napus HOM05D004613 ORTHO05D014940 1.6e-10 71.2 69 56.5
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 1.6e-10 71.2 49 65.3
BcaC04g20970 Brassica carinata HOM05D004613 ORTHO05D014940 3.6e-10 70.1 39 82.1
Cre02.g117300 Chlamydomonas reinhardtii HOM05D004613 ORTHO05D006095 1.0e-09 68.6 168 32.1
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.2e-09 66.2 50 64.0
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.2e-09 66.2 50 64.0
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.2e-09 66.2 50 64.0
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.2e-09 66.2 50 64.0
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.2e-09 66.2 50 64.0
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.2e-09 66.2 50 64.0
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.2e-09 66.2 50 64.0
BcaB01g02118 Brassica carinata HOM05D004613 ORTHO05D014940 2.0e-08 64.3 39 74.4
BcaC02g11089 Brassica carinata HOM05D000249 ORTHO05D032228 7.5e-08 62.4 37 73.0
A09p36030 Brassica napus HOM05D030286 ORTHO05D014940 1.8e-06 57.8 68 52.9


User provided reference genes

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