Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 1.1e-215 753.1 385 100.0
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 1.1e-215 753.1 385 100.0
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 5.8e-209 730.7 385 97.4
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 5.8e-209 730.7 385 97.4
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 6.0e-190 667.5 386 89.4
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 8.7e-157 557.4 296 96.6
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 4.0e-117 425.6 387 63.3
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 2.9e-112 409.5 298 73.2
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 1.1e-106 391.0 298 72.8
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 4.0e-101 372.5 303 67.0
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 3.4e-100 369.4 299 65.2
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 4.4e-100 369.0 297 65.0
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 3.9e-96 355.9 388 54.9
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 5.0e-96 355.5 388 54.9
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 8.3e-91 338.2 391 54.2
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 2.4e-90 336.7 375 53.3
BcaC03g17870 Brassica carinata HOM05D011290 ORTHO05D010021 3.2e-90 336.3 327 61.5
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 2.1e-89 333.6 391 51.9
BolC2t11965H Brassica oleracea HOM05D003663 ORTHO05D010021 4.7e-86 322.4 277 66.4
C02p59100 Brassica napus HOM05D003663 ORTHO05D010021 6.0e-81 305.4 274 65.0
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 2.5e-71 273.5 202 72.3
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 3.9e-64 249.6 390 43.8
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 4.5e-60 236.1 198 63.6
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 1.8e-48 197.6 174 54.6
Carub.0006s2422 Capsella rubella HOM05D003663 ORTHO05D010021 6.1e-41 172.6 107 84.1
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 2.2e-38 164.1 353 36.5
BcaNung02824 Brassica carinata HOM05D003663 ORTHO05D010021 1.1e-34 151.8 91 86.8
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 6.7e-32 142.5 161 47.2
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 2.0e-31 141.0 176 42.6
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 2.0e-31 141.0 176 42.6
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 5.7e-31 139.4 173 44.5
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 3.7e-30 136.7 135 51.9
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.8e-29 134.4 164 44.5
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 2.4e-29 134.0 173 44.5
Sp2g21380 Schrenkiella parvula HOM05D003663 ORTHO05D010021 2.4e-29 134.0 94 75.5
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 3.1e-29 133.7 169 45.0
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 4.1e-29 133.3 178 42.7
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 5.3e-29 132.9 135 48.9
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 5.3e-29 132.9 165 45.5
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 6.9e-29 132.5 143 48.3
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 9.1e-29 132.1 164 42.7
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 4.5e-28 129.8 144 47.9
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.3e-27 128.3 161 42.2
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 1.3e-27 128.3 135 46.7
CARHR186970 Cardamine hirsuta HOM05D003663 ORTHO05D010021 2.2e-27 127.5 95 72.6
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 6.5e-27 125.9 180 41.1
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.1e-26 125.2 160 40.6
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 1.4e-26 124.8 135 47.4
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 7.2e-26 122.5 157 43.9
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 1.2e-25 121.7 167 41.9
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.6e-25 121.3 195 40.0
Carub.0006s2421 Capsella rubella HOM05D003663 ORTHO05D010021 3.6e-25 120.2 80 78.8
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 3.6e-25 120.2 153 43.1
Thhalv10005177m.g Eutrema salsugineum HOM05D003663 ORTHO05D010021 6.1e-25 119.4 94 67.0
BcaC04g23625 Brassica carinata HOM05D003663 ORTHO05D010021 3.9e-24 116.7 94 64.9
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 2.0e-23 114.4 160 41.9
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 7.4e-23 112.5 177 37.9
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 7.4e-23 112.5 166 41.0
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 2.2e-22 110.9 143 40.6
THA.LOC104818768 Tarenaya hassleriana HOM05D003663 ORTHO05D010021 2.2e-22 110.9 105 61.9
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 8.2e-22 109.0 160 40.0
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 1.1e-21 108.6 167 40.1
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.4e-21 108.2 161 42.2
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.4e-21 108.2 159 41.5
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 1.8e-21 107.8 159 41.5
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 2.4e-21 107.5 160 40.0
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 2.4e-21 107.5 138 42.8
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 4.1e-21 106.7 160 40.6
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 5.3e-21 106.3 160 41.2
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 9.1e-21 105.5 159 39.6
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 1.2e-20 105.1 167 38.9
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 1.2e-20 105.1 160 39.4
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 1.6e-20 104.8 139 42.4
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 2.6e-20 104.0 160 40.0
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 3.5e-20 103.6 167 35.3
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 3.5e-20 103.6 174 34.5
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 4.5e-20 103.2 173 37.6
Thhalv10021806m.g Eutrema salsugineum HOM05D003663 ORTHO05D010021 7.7e-20 102.4 98 58.2
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 1.3e-19 101.7 152 39.5
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 1.7e-19 101.3 134 42.5
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 2.2e-19 100.9 151 39.1
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 2.9e-19 100.5 143 38.5
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 2.9e-19 100.5 159 36.5
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 3.8e-19 100.1 194 36.6
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 8.5e-19 99.0 179 35.8
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 1.1e-18 98.6 173 36.4
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 3.2e-18 97.1 138 39.1
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 3.2e-18 97.1 168 34.5
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 3.2e-18 97.1 159 36.5
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 3.2e-18 97.1 154 39.0
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 3.2e-18 97.1 165 35.2
Sp3g04840 Schrenkiella parvula HOM05D003663 ORTHO05D010021 4.2e-18 96.7 101 53.5
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 4.2e-18 96.7 194 33.5
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 5.5e-18 96.3 166 35.5
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 5.5e-18 96.3 165 36.4
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 7.2e-18 95.9 184 32.6
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 7.2e-18 95.9 159 37.7
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 7.2e-18 95.9 139 33.8
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 9.4e-18 95.5 182 35.2
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 9.4e-18 95.5 150 36.0
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 9.4e-18 95.5 139 36.7
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 9.4e-18 95.5 163 36.8
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 1.6e-17 94.7 146 37.0
BcaB04g19233 Brassica carinata HOM05D003663 ORTHO05D010021 2.1e-17 94.4 101 53.5
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 2.1e-17 94.4 182 34.1
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 2.1e-17 94.4 182 33.0
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 2.7e-17 94.0 138 37.0
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 2.7e-17 94.0 138 37.0
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 2.7e-17 94.0 169 33.1
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 2.7e-17 94.0 163 35.6
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 2.7e-17 94.0 93 46.2
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 3.6e-17 93.6 136 38.2
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 4.7e-17 93.2 163 35.0
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 4.7e-17 93.2 169 33.1
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 6.1e-17 92.8 143 37.8
BraA03t12614Z Brassica rapa HOM05D003663 ORTHO05D010021 6.1e-17 92.8 101 51.5
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 6.1e-17 92.8 154 37.0
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 6.1e-17 92.8 111 44.1
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 8.0e-17 92.4 190 32.6
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 8.0e-17 92.4 167 35.3
BcaB04g19228 Brassica carinata HOM05D003663 ORTHO05D010021 1.0e-16 92.0 86 57.0
BcaC01g04309 Brassica carinata HOM05D003663 ORTHO05D010021 1.0e-16 92.0 86 57.0
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 1.0e-16 92.0 132 39.4
C03p41850 Brassica napus HOM05D003663 ORTHO05D010021 1.0e-16 92.0 86 57.0
BolC3t16468H Brassica oleracea HOM05D003663 ORTHO05D010021 1.0e-16 92.0 86 57.0
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 1.4e-16 91.7 190 32.1
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 1.4e-16 91.7 189 31.7
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 1.4e-16 91.7 166 35.5
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.4e-16 91.7 163 34.4
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.4e-16 91.7 164 34.8
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 1.4e-16 91.7 156 34.0
A03p34380 Brassica napus HOM05D003663 ORTHO05D010021 4.0e-16 90.1 101 50.5
CARHR080410 Cardamine hirsuta HOM05D003663 ORTHO05D010021 4.0e-16 90.1 100 52.0
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 5.2e-16 89.7 155 36.1
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 5.2e-16 89.7 157 32.5
AT3G05936 Arabidopsis thaliana HOM05D003663 ORTHO05D010021 8.8e-16 89.0 88 55.7
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 8.8e-16 89.0 160 32.5
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 1.2e-15 88.6 177 34.5
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.5e-15 88.2 154 33.1
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 2.0e-15 87.8 174 33.9
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 2.0e-15 87.8 168 33.9
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 2.6e-15 87.4 157 32.5
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 2.6e-15 87.4 135 34.8
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 2.6e-15 87.4 135 34.8
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 4.4e-15 86.7 174 32.2
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 4.4e-15 86.7 153 34.0
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 4.4e-15 86.7 174 32.2
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 7.5e-15 85.9 136 35.3
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 9.7e-15 85.5 149 35.6
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 9.7e-15 85.5 135 39.3
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 1.3e-14 85.1 207 30.0
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 1.3e-14 85.1 179 32.4
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 1.7e-14 84.7 121 38.0
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 2.2e-14 84.3 183 33.9
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 2.2e-14 84.3 137 39.4
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 2.8e-14 84.0 152 32.9
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 2.8e-14 84.0 146 33.6
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 2.8e-14 84.0 157 33.8
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 2.8e-14 84.0 170 33.5
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 3.7e-14 83.6 181 31.5
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 4.8e-14 83.2 171 30.4
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 6.3e-14 82.8 118 39.0
Carub.0003s0532 Capsella rubella HOM05D003663 ORTHO05D010021 8.2e-14 82.4 104 49.0
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.4e-13 81.6 171 30.4
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 2.4e-13 80.9 122 36.1
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 4.1e-13 80.1 111 35.1
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 4.1e-13 80.1 132 34.8
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 4.1e-13 80.1 136 35.3
THA.LOC104803108 Tarenaya hassleriana HOM05D003663 ORTHO05D010021 5.3e-13 79.7 96 53.1
AL3G16710 Arabidopsis lyrata HOM05D003663 ORTHO05D010021 1.6e-12 78.2 105 45.7
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 2.7e-12 77.4 149 34.2
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 7.7e-12 75.9 165 31.5
Aa31LG5G16360 Aethionema arabicum HOM05D003663 ORTHO05D010021 2.9e-11 73.9 83 55.4
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 2.9e-11 73.9 119 40.3
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.1e-10 72.0 162 28.4
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 1.5e-10 71.6 160 28.8
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 1.9e-10 71.2 134 33.6
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 1.9e-10 71.2 115 40.0
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 1.6e-09 68.2 144 31.2
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 1.5e-07 61.6 80 38.8
Psat6g221920 Pisum sativum HOM05D002727 ORTHO05D002856 3.4e-07 60.5 159 27.0
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.3e-06 58.5 109 34.9
Lj8P120T45 Lonicera japonica HOM05D007205 ORTHO05D009175 1.7e-06 58.2 136 27.2
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 2.2e-06 57.8 183 28.4
arahy.Tifrunner.gnm1.ann1.E5JI7C Arachis hypogaea HOM05D002727 ORTHO05D002856 8.3e-06 55.8 145 25.5
arahy.Tifrunner.gnm1.ann1.NZR7KS Arachis hypogaea HOM05D002727 ORTHO05D002856 8.3e-06 55.8 145 25.5


User provided reference genes

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