Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p01540 Brassica napus HOM05D014544 ORTHO05D013645 8.3e-64 246.9 126 100.0
A06p36700 Brassica napus HOM05D014544 ORTHO05D013645 8.3e-64 246.9 126 100.0
BraA06t26591Z Brassica rapa HOM05D014544 ORTHO05D013645 8.3e-64 246.9 126 100.0
BolC9t58318H Brassica oleracea HOM05D014544 ORTHO05D013645 5.7e-57 224.2 123 94.3
A09p48730 Brassica napus HOM05D014544 ORTHO05D013645 1.4e-55 219.5 123 91.9
BraA09t40325Z Brassica rapa HOM05D014544 ORTHO05D013645 1.4e-55 219.5 123 91.9
C09p54510 Brassica napus HOM05D014544 ORTHO05D013645 1.4e-47 193.0 108 93.5
BcaC07g40800 Brassica carinata HOM05D014544 ORTHO05D013645 1.9e-39 166.0 95 90.5
BcaB08g37148 Brassica carinata HOM05D000033 ORTHO05D001614 2.0e-17 92.8 52 90.4
BcaC04g19354 Brassica carinata HOM05D000033 ORTHO05D001614 9.9e-17 90.5 49 93.9
A10p27470 Brassica napus HOM05D000033 ORTHO05D001614 9.9e-17 90.5 49 93.9
C09p67540 Brassica napus HOM05D000033 ORTHO05D001614 9.9e-17 90.5 49 93.9
BolC9t59515H Brassica oleracea HOM05D000033 ORTHO05D001614 9.9e-17 90.5 49 93.9
BraA10t44799Z Brassica rapa HOM05D000033 ORTHO05D001614 9.9e-17 90.5 49 93.9
THA.LOC104799205 Tarenaya hassleriana HOM05D000033 ORTHO05D001614 2.4e-15 85.9 53 83.0
Thhalv10012534m.g Eutrema salsugineum HOM05D000033 ORTHO05D001614 3.2e-15 85.5 47 91.5
Sp6g33380 Schrenkiella parvula HOM05D000033 ORTHO05D001614 9.3e-15 84.0 50 84.0
C03p04820 Brassica napus HOM05D000033 ORTHO05D001614 2.7e-14 82.4 54 77.8
BolC3t13016H Brassica oleracea HOM05D000033 ORTHO05D001614 2.7e-14 82.4 54 77.8
Carub.0006s0848 Capsella rubella HOM05D000033 ORTHO05D001614 3.5e-14 82.0 50 84.0
Aa31LG3G17110 Aethionema arabicum HOM05D000033 ORTHO05D001614 4.6e-14 81.6 52 78.8
Aa31LG1G17010 Aethionema arabicum HOM05D000033 ORTHO05D001614 6.0e-14 81.3 52 78.8
CARHR203290 Cardamine hirsuta HOM05D000033 ORTHO05D001614 6.0e-14 81.3 48 85.4
A03p04370 Brassica napus HOM05D000033 ORTHO05D001614 1.0e-13 80.5 54 75.9
BraA03t09781Z Brassica rapa HOM05D000033 ORTHO05D001614 3.0e-13 79.0 53 75.5
AL6G20460 Arabidopsis lyrata HOM05D000033 ORTHO05D001614 5.1e-13 78.2 49 81.6
AT5G10020 Arabidopsis thaliana HOM05D000033 ORTHO05D001614 5.1e-13 78.2 49 81.6
Ciclev10024775m.g Citrus clementina HOM05D000033 ORTHO05D001614 2.5e-12 75.9 54 66.7
Actinidia08333 Actinidia chinensis HOM05D000033 ORTHO05D013645 5.6e-12 74.7 53 67.9
Gohir.D11G226100 Gossypium hirsutum HOM05D000033 ORTHO05D001614 9.6e-12 73.9 54 64.8
Gorai.007G244000 Gossypium raimondii HOM05D000033 ORTHO05D001614 9.6e-12 73.9 54 64.8
Gohir.A02G133900 Gossypium hirsutum HOM05D000033 ORTHO05D001614 1.6e-11 73.2 54 63.0
Gohir.D03G045300 Gossypium hirsutum HOM05D000033 ORTHO05D001614 1.6e-11 73.2 54 63.0
Gorai.003G046400 Gossypium raimondii HOM05D000033 ORTHO05D001614 1.6e-11 73.2 54 63.0
Thecc.01G111100 Theobroma cacao HOM05D000033 ORTHO05D001614 1.6e-11 73.2 54 64.8
Atru.chr4.390 Acer truncatum HOM05D000033 ORTHO05D001614 2.8e-11 72.4 52 61.5
COL.COLO4_11029 Corchorus olitorius HOM05D000033 ORTHO05D001614 4.8e-11 71.6 54 61.1
MELO3C007800.2 Cucumis melo HOM05D000033 ORTHO05D001614 6.2e-11 71.2 52 65.4
Gohir.A11G198600 Gossypium hirsutum HOM05D000033 ORTHO05D001614 6.2e-11 71.2 54 63.0
Actinidia33366 Actinidia chinensis HOM05D000033 ORTHO05D001614 8.1e-11 70.9 50 68.0
Peaxi162Scf01006g00001 Petunia axillaris HOM05D000033 ORTHO05D001614 8.1e-11 70.9 55 63.6
MBI02_g13015_MAGBIO Magnolia biondii HOM05D000033 ORTHO05D001614 1.8e-10 69.7 66 54.5
Potri.007G082800 Populus trichocarpa HOM05D000033 ORTHO05D001614 1.8e-10 69.7 53 62.3
GSVIVG01022212001 Vitis vinifera HOM05D000033 ORTHO05D001614 1.8e-10 69.7 52 63.5
EL10Ac6g14731 Beta vulgaris HOM05D000033 ORTHO05D001614 2.4e-10 69.3 54 63.0
Cc07_g16010 Coffea canephora HOM05D000033 ORTHO05D001614 2.4e-10 69.3 64 56.2
CsaV3_6G045930 Cucumis sativus L. HOM05D000033 ORTHO05D001614 3.1e-10 68.9 52 63.5
Nitab4.5_0000156g0130 Nicotiana tabacum HOM05D000033 ORTHO05D001614 3.1e-10 68.9 67 52.2
SGA_v2.0_scaffold47G17724 Striga asiatica HOM05D000033 ORTHO05D001614 3.1e-10 68.9 51 64.7
ClCG01G019240 Citrullus lanatus HOM05D000033 ORTHO05D001614 4.0e-10 68.6 48 68.8
Nn5g28948 Nelumbo nucifera HOM05D000033 ORTHO05D001614 4.0e-10 68.6 52 65.4
Duzib264G0199 Durio zibethinus HOM05D000033 ORTHO05D001614 5.3e-10 68.2 56 60.7
Sed0020699 Sechium edule HOM05D000033 ORTHO05D001614 5.3e-10 68.2 51 66.7
Potri.005G083000 Populus trichocarpa HOM05D000033 ORTHO05D001614 9.0e-10 67.4 51 60.8
SalBow6G1912 Salvia bowleyana HOM05D000033 ORTHO05D001614 9.0e-10 67.4 49 67.3
SalBow6G6313 Salvia bowleyana HOM05D000033 ORTHO05D001614 9.0e-10 67.4 49 67.3
Ah.02g119230 Amaranthus hybridus HOM05D000033 ORTHO05D001614 1.2e-09 67.0 50 66.0
AUR62003320 Chenopodium quinoa HOM05D000033 ORTHO05D001614 1.2e-09 67.0 53 60.4
HanXRQChr15g0471911 Helianthus annuus HOM05D000033 ORTHO05D001614 1.2e-09 67.0 53 58.5
FAN19G0193 Fragaria x ananassa HOM05D014544 ORTHO05D013645 1.5e-09 66.6 52 59.6
PGR004G1442 Punica granatum HOM05D000033 ORTHO05D001614 1.5e-09 66.6 55 58.2
Solyc04g054200.3 Solanum lycopersicum HOM05D000033 ORTHO05D001614 1.5e-09 66.6 70 48.6
Sopen04g023670 Solanum pennellii HOM05D000033 ORTHO05D001614 1.5e-09 66.6 70 48.6
Aqoxy6G00499 Aquilegia oxysepala HOM05D000033 ORTHO05D001614 2.0e-09 66.2 53 64.2
Hund19667 Selenicereus undatus HOM05D000033 ORTHO05D001614 2.0e-09 66.2 52 61.5
DCAR_011441 Daucus carota HOM05D000033 ORTHO05D001614 2.6e-09 65.9 51 62.7
MD01G1018100 Malus domestica HOM05D000033 ORTHO05D013645 2.6e-09 65.9 50 62.0
Lj2A560T65 Lonicera japonica HOM05D000033 ORTHO05D001614 3.4e-09 65.5 53 66.0
Nitab4.5_0000689g0010 Nicotiana tabacum HOM05D000033 ORTHO05D001614 3.4e-09 65.5 66 51.5
SHI11673 Sapria himalayana HOM05D000033 ORTHO05D001614 3.4e-09 65.5 58 53.4
Hund03548 Selenicereus undatus HOM05D000033 ORTHO05D001614 3.4e-09 65.5 54 61.1
Nn1g05202 Nelumbo nucifera HOM05D000033 ORTHO05D001614 4.5e-09 65.1 52 63.5
AUR62016262 Chenopodium quinoa HOM05D000033 ORTHO05D001614 5.8e-09 64.7 52 59.6
CAN.G267.8 Capsicum annuum HOM05D000033 ORTHO05D001614 7.6e-09 64.3 54 57.4
Haze_25027 Corylus avellana HOM05D000033 ORTHO05D001614 7.6e-09 64.3 53 60.4
PSO541G5239 Papaver somniferum HOM05D000033 ORTHO05D001614 7.6e-09 64.3 52 61.5
PSO675G8394 Papaver somniferum HOM05D000033 ORTHO05D001614 7.6e-09 64.3 52 61.5
Sabra05G0068100 Salix brachista HOM05D000033 ORTHO05D001614 7.6e-09 64.3 51 58.8
CSS0006075 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D001614 9.9e-09 63.9 48 62.5
Dinv00902 Davidia involucrata HOM05D000033 ORTHO05D001614 9.9e-09 63.9 51 62.7
ECA238G1165 Erigeron canadensis HOM05D000033 ORTHO05D001614 9.9e-09 63.9 54 57.4
Eucgr.I00330 Eucalyptus grandis HOM05D000033 ORTHO05D001614 9.9e-09 63.9 53 60.4
QL06p032455 Quercus lobata HOM05D000033 ORTHO05D013645 9.9e-09 63.9 54 59.3
RcHm_v2.0_Chr2g0116131 Rosa chinensis HOM05D000033 ORTHO05D001614 9.9e-09 63.9 50 58.0
PGSC0003DMG400012955 Solanum tuberosum HOM05D000033 ORTHO05D001614 9.9e-09 63.9 51 60.8
CSS0001371 Camellia sinensis var. sinensis HOM05D000033 ORTHO05D001614 1.3e-08 63.5 54 59.3
Dinv19507 Davidia involucrata HOM05D000033 ORTHO05D001614 1.3e-08 63.5 51 62.7
FvH4_1g22060 Fragaria vesca HOM05D000033 ORTHO05D001614 1.3e-08 63.5 51 56.9
FvH4_1g25730 Fragaria vesca HOM05D000033 ORTHO05D013645 1.3e-08 63.5 51 58.8
FAN19G3167 Fragaria x ananassa HOM05D000033 ORTHO05D001614 1.3e-08 63.5 51 56.9
FAN26G0225 Fragaria x ananassa HOM05D000033 ORTHO05D001614 1.3e-08 63.5 51 56.9
Hma1.2p1_0375F.1_g138640 Hydrangea macrophylla HOM05D000033 ORTHO05D001614 1.3e-08 63.5 50 60.0
Migut.H02415 Erythranthe guttata HOM05D000033 ORTHO05D001614 2.2e-08 62.8 50 62.0
TAR628G0245 Trochodendron aralioides HOM05D000033 ORTHO05D001614 2.2e-08 62.8 51 62.7
Phvul.009G140500 Phaseolus vulgaris HOM05D000033 ORTHO05D001614 2.9e-08 62.4 52 61.5
TWI74G1470 Tripterygium wilfordii HOM05D000033 ORTHO05D001614 2.9e-08 62.4 48 64.6
VMungo1309G0168 Vigna mungo HOM05D000033 ORTHO05D001614 2.9e-08 62.4 52 61.5
FAN23G2681 Fragaria x ananassa HOM05D000033 ORTHO05D001614 3.8e-08 62.0 50 56.0
FAN28G0439 Fragaria x ananassa HOM05D000033 ORTHO05D001614 3.8e-08 62.0 50 56.0
Glyma.04G220400 Glycine max HOM05D000033 ORTHO05D001614 3.8e-08 62.0 51 60.8
Lalb_Chr23g0272331 Lupinus albus HOM05D000033 ORTHO05D001614 3.8e-08 62.0 52 61.5
Manes.02G167850 Manihot esculenta HOM05D014544 ORTHO05D013645 3.8e-08 62.0 48 64.6
Manes.12G141100 Manihot esculenta HOM05D000033 ORTHO05D001614 3.8e-08 62.0 47 66.0
Rhsim10G0151900 Rhododendron simsii HOM05D000033 ORTHO05D001614 6.4e-08 61.2 55 54.5
arahy.Tifrunner.gnm1.ann1.WWX9VA Arachis hypogaea HOM05D000033 ORTHO05D001614 8.4e-08 60.8 52 59.6
vmacro12913 Vaccinium macrocarpon HOM05D000033 ORTHO05D001614 8.4e-08 60.8 53 54.7
Glyma.06G145500 Glycine max HOM05D000033 ORTHO05D001614 1.1e-07 60.5 52 59.6
SGA_v2.0_scaffold51G18735 Striga asiatica HOM05D000033 ORTHO05D001614 1.1e-07 60.5 55 52.7
TWI77G0786 Tripterygium wilfordii HOM05D000033 ORTHO05D001614 1.1e-07 60.5 49 59.2
CiPaw.03G135200 Carya illinoinensis HOM05D000033 ORTHO05D001614 1.4e-07 60.1 53 54.7
Sc07g0001500 Simmondsia chinensis HOM05D000033 ORTHO05D001614 1.9e-07 59.7 54 55.6
HPP92_027260 Vanilla planifolia HOM05D001408 ORTHO05D001312 1.9e-07 59.7 51 49.0
DCAR_000997 Daucus carota HOM05D000033 ORTHO05D001614 2.4e-07 59.3 51 54.9
Medtr3g094710 Medicago truncatula HOM05D000033 ORTHO05D001614 2.4e-07 59.3 52 55.8
Zm00001eb327990 Zea mays HOM05D000033 ORTHO05D001614 2.4e-07 59.3 51 51.0
Zm00001eb109780 Zea mays HOM05D000033 ORTHO05D001614 3.2e-07 58.9 51 51.0
Oeu002110.2 Olea europaea HOM05D000033 ORTHO05D001614 4.2e-07 58.5 61 54.1
Psat5g066800 Pisum sativum HOM05D000033 ORTHO05D001614 4.2e-07 58.5 53 56.6
TPR.G23735 Trifolium pratense HOM05D000033 ORTHO05D001614 4.2e-07 58.5 52 57.7
Lj1g0003526 Lotus japonicus HOM05D000033 ORTHO05D001614 7.1e-07 57.8 52 57.7
Lsat_1_v5_gn_2_67640 Lactuca sativa HOM05D000033 ORTHO05D001614 9.3e-07 57.4 53 56.6
Os07g0626500 Oryza sativa ssp. japonica HOM05D000033 ORTHO05D001614 9.3e-07 57.4 51 51.0
ATR0564G181 Amborella trichopoda HOM05D000033 ORTHO05D001614 1.2e-06 57.0 54 51.9
Lalb_Chr08g0238911 Lupinus albus HOM05D000033 ORTHO05D001614 1.6e-06 56.6 53 49.1
SGA_v2.0_scaffold2G01302 Striga asiatica HOM05D000033 ORTHO05D001614 1.6e-06 56.6 50 56.0
Ca_16885_v3 Cicer arietinum L. HOM05D000033 ORTHO05D001614 2.7e-06 55.8 51 54.9
CDE03G0068 Ceratophyllum demersum HOM05D000033 ORTHO05D001614 6.0e-06 54.7 47 57.4
TAR625G0820 Trochodendron aralioides HOM05D000033 ORTHO05D001614 6.0e-06 54.7 50 56.0


User provided reference genes

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