Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p36610 Brassica napus HOM05D004770 ORTHO05D005572 1.9e-122 442.6 227 100.0
BraA06t26586Z Brassica rapa HOM05D004770 ORTHO05D005572 1.9e-122 442.6 227 100.0
BcaNung03978 Brassica carinata HOM05D004770 ORTHO05D005572 2.0e-121 439.1 227 98.7
Sp2g21620 Schrenkiella parvula HOM05D004770 ORTHO05D005572 7.3e-119 430.6 227 96.5
BcaNung02803 Brassica carinata HOM05D004770 ORTHO05D005572 9.5e-119 430.3 227 96.9
AL2G11930 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 5.8e-116 421.0 227 94.3
Thhalv10004885m.g Eutrema salsugineum HOM05D004770 ORTHO05D005572 9.8e-116 420.2 227 95.2
Aa31LG10G17080 Aethionema arabicum HOM05D004770 ORTHO05D005572 6.4e-115 417.5 227 92.5
AT5G26110 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 6.4e-115 417.5 227 94.3
C07p41870 Brassica napus HOM05D004770 ORTHO05D005572 2.7e-113 412.1 214 97.7
CARHR187390 Cardamine hirsuta HOM05D004770 ORTHO05D005572 2.7e-113 412.1 227 92.5
Carub.0005s0602 Capsella rubella HOM05D004770 ORTHO05D005572 4.6e-113 411.4 228 92.5
Carub.0006s2388 Capsella rubella HOM05D004770 ORTHO05D005572 2.3e-112 409.1 227 92.1
BolC7t44719H Brassica oleracea HOM05D004770 ORTHO05D005572 5.8e-108 394.4 237 87.3
Potri.002G049900 Populus trichocarpa HOM05D004770 ORTHO05D005572 3.2e-106 388.7 227 85.9
Manes.01G205200 Manihot esculenta HOM05D004770 ORTHO05D005572 7.1e-106 387.5 227 85.0
Atru.chr5.1488 Acer truncatum HOM05D004770 ORTHO05D005572 2.1e-105 386.0 227 85.5
CSS0005681 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 7.8e-105 384.0 227 84.1
CiPaw.07G089000 Carya illinoinensis HOM05D004770 ORTHO05D005572 7.8e-105 384.0 227 83.7
THA.LOC104817561 Tarenaya hassleriana HOM05D004770 ORTHO05D005572 7.8e-105 384.0 218 88.5
Cc01_g06090 Coffea canephora HOM05D004770 ORTHO05D005572 1.3e-104 383.3 227 84.1
Potri.005G212800 Populus trichocarpa HOM05D004770 ORTHO05D005572 1.3e-104 383.3 222 87.8
Eucgr.G02085 Eucalyptus grandis HOM05D004770 ORTHO05D005572 5.1e-104 381.3 227 83.7
PGR031G3940 Punica granatum HOM05D004770 ORTHO05D005572 8.6e-104 380.6 227 83.7
CSS0032403 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 1.1e-103 380.2 227 83.7
Hma1.2p1_2357F.1_g320590 Hydrangea macrophylla HOM05D004770 ORTHO05D005572 1.5e-103 379.8 227 83.7
QL01p010878 Quercus lobata HOM05D004770 ORTHO05D005572 1.9e-103 379.4 226 83.2
Cfa006174 Carpinus fangiana HOM05D004770 ORTHO05D005572 2.5e-103 379.0 227 82.4
vmacro02598 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 2.5e-103 379.0 228 82.9
Actinidia24914 Actinidia chinensis HOM05D004770 ORTHO05D005572 4.3e-103 378.3 217 84.3
SGA_v2.0_scaffold1G00513 Striga asiatica HOM05D004770 ORTHO05D005572 4.3e-103 378.3 227 83.3
TAR362G0723 Trochodendron aralioides HOM05D004770 ORTHO05D005572 9.6e-103 377.1 227 82.4
Lj1A49T61 Lonicera japonica HOM05D004770 ORTHO05D005572 1.2e-102 376.7 221 86.0
Lalb_Chr18g0051481 Lupinus albus HOM05D004770 ORTHO05D005572 1.2e-102 376.7 227 83.3
Nn1g02388 Nelumbo nucifera HOM05D004770 ORTHO05D005572 1.2e-102 376.7 227 81.9
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 1.2e-102 376.7 228 84.6
Oeu025750.1 Olea europaea HOM05D004770 ORTHO05D005572 2.1e-102 375.9 219 85.8
SalBow4G2779 Salvia bowleyana HOM05D004770 ORTHO05D005572 2.1e-102 375.9 226 85.0
Nn6g34126 Nelumbo nucifera HOM05D004770 ORTHO05D005572 2.8e-102 375.6 227 81.9
Ciclev10022091m.g Citrus clementina HOM05D004770 ORTHO05D005572 4.7e-102 374.8 217 86.6
Lj3A581T22 Lonicera japonica HOM05D004770 ORTHO05D005572 6.2e-102 374.4 221 85.5
Thecc.01G273700 Theobroma cacao HOM05D004770 ORTHO05D005572 6.2e-102 374.4 227 81.9
arahy.Tifrunner.gnm1.ann1.YE39MU Arachis hypogaea HOM05D004770 ORTHO05D005572 8.1e-102 374.0 226 81.4
CANSAT80G2828 Cannabis sativa HOM05D004770 ORTHO05D005572 1.1e-101 373.6 227 82.8
Sabra02G0040800 Salix brachista HOM05D004770 ORTHO05D005572 1.1e-101 373.6 223 86.1
arahy.Tifrunner.gnm1.ann1.W9SXTW Arachis hypogaea HOM05D004770 ORTHO05D005572 1.4e-101 373.2 226 81.0
Dinv34783 Davidia involucrata HOM05D004770 ORTHO05D005572 1.4e-101 373.2 227 83.7
TWI39G0629 Tripterygium wilfordii HOM05D004770 ORTHO05D005572 2.4e-101 372.5 227 81.5
arahy.Tifrunner.gnm1.ann1.RIN6C8 Arachis hypogaea HOM05D004770 ORTHO05D005572 3.1e-101 372.1 226 81.0
Duzib138G1187 Durio zibethinus HOM05D004770 ORTHO05D005572 4.0e-101 371.7 227 82.4
HanXRQChr08g0213371 Helianthus annuus HOM05D004770 ORTHO05D005572 5.2e-101 371.3 227 82.4
FAN20G2343 Fragaria x ananassa HOM05D004770 ORTHO05D005572 8.9e-101 370.5 229 81.7
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.5e-100 369.8 211 86.7
Nitab4.5_0000208g0100 Nicotiana tabacum HOM05D004770 ORTHO05D005572 1.5e-100 369.8 227 81.5
Glyma.18G056100 Glycine max HOM05D004770 ORTHO05D005572 2.0e-100 369.4 227 81.1
MD11G1280900 Malus domestica HOM05D004770 ORTHO05D005572 2.0e-100 369.4 229 81.7
Aqoxy2G03435 Aquilegia oxysepala HOM05D004770 ORTHO05D005572 2.6e-100 369.0 227 81.9
SalBow7G1168 Salvia bowleyana HOM05D004770 ORTHO05D005572 2.6e-100 369.0 227 82.8
AUR62032312 Chenopodium quinoa HOM05D004770 ORTHO05D005572 4.4e-100 368.2 227 81.1
arahy.Tifrunner.gnm1.ann1.S84LE1 Arachis hypogaea HOM05D004770 ORTHO05D005572 5.8e-100 367.9 226 80.1
ClCG03G016560 Citrullus lanatus HOM05D004770 ORTHO05D005572 5.8e-100 367.9 227 81.1
GSVIVG01001190001 Vitis vinifera HOM05D004770 ORTHO05D005572 5.8e-100 367.9 227 80.2
EL10Ac5g10525 Beta vulgaris HOM05D004770 ORTHO05D005572 9.9e-100 367.1 227 80.6
Migut.D00330 Erythranthe guttata HOM05D004770 ORTHO05D005572 1.3e-99 366.7 221 85.1
Migut.N02033 Erythranthe guttata HOM05D004770 ORTHO05D005572 2.2e-99 365.9 227 81.5
MBI02_g08255_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 2.2e-99 365.9 215 83.7
RcHm_v2.0_Chr6g0290401 Rosa chinensis HOM05D004770 ORTHO05D005572 2.2e-99 365.9 229 81.2
ECA248G2232 Erigeron canadensis HOM05D004770 ORTHO05D005572 2.9e-99 365.5 227 80.6
DCAR_012498 Daucus carota HOM05D004770 ORTHO05D005572 4.9e-99 364.8 216 83.8
Nitab4.5_0000759g0280 Nicotiana tabacum HOM05D004770 ORTHO05D005572 6.4e-99 364.4 227 81.5
Phvul.006G075100 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 6.4e-99 364.4 227 79.7
Medtr3g465790 Medicago truncatula HOM05D004770 ORTHO05D005572 8.4e-99 364.0 227 79.7
Phvul.007G249400 Phaseolus vulgaris HOM05D004770 ORTHO05D005572 8.4e-99 364.0 227 80.6
Gorai.008G003100 Gossypium raimondii HOM05D004770 ORTHO05D005572 1.1e-98 363.6 227 78.9
Gohir.D12G003300 Gossypium hirsutum HOM05D004770 ORTHO05D005572 1.4e-98 363.2 227 78.4
VMungo0540G0250 Vigna mungo HOM05D004770 ORTHO05D005572 1.9e-98 362.8 227 80.2
MELO3C015367.2 Cucumis melo HOM05D004770 ORTHO05D005572 5.4e-98 361.3 227 79.7
Gohir.A12G003600 Gossypium hirsutum HOM05D004770 ORTHO05D005572 7.1e-98 360.9 227 78.9
Ca_15021_v3 Cicer arietinum L. HOM05D004770 ORTHO05D005572 9.3e-98 360.5 217 82.0
Lsat_1_v5_gn_5_186200 Lactuca sativa HOM05D004770 ORTHO05D005572 1.6e-97 359.8 224 81.7
Solyc06g084160.4 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.6e-97 359.8 228 81.1
FAN27G1754 Fragaria x ananassa HOM05D004770 ORTHO05D005572 4.6e-97 358.2 233 78.1
PSO832G1010 Papaver somniferum HOM05D004770 ORTHO05D005572 4.6e-97 358.2 227 78.0
CAN.G1549.14 Capsicum annuum HOM05D004770 ORTHO05D005572 6.0e-97 357.8 228 81.1
COL.COLO4_09057 Corchorus olitorius HOM05D001769 ORTHO05D001695 1.0e-96 357.1 207 85.5
Rhsim13G0027500 Rhododendron simsii HOM05D004770 ORTHO05D005572 1.3e-96 356.7 214 81.8
HPP92_017651 Vanilla planifolia HOM05D004770 ORTHO05D005572 1.3e-96 356.7 215 82.3
PGSC0003DMG400020135 Solanum tuberosum HOM05D004770 ORTHO05D005572 1.7e-96 356.3 228 80.3
CsaV3_1G039420 Cucumis sativus L. HOM05D004770 ORTHO05D005572 2.3e-96 355.9 224 79.5
Sopen06g035540 Solanum pennellii HOM05D004770 ORTHO05D005572 2.3e-96 355.9 228 80.3
PSO170G2661 Papaver somniferum HOM05D004770 ORTHO05D005572 6.6e-96 354.4 227 78.0
Solyc08g005140.3 Solanum lycopersicum HOM05D004770 ORTHO05D005572 1.1e-95 353.6 227 79.7
Sed0021970 Sechium edule HOM05D004770 ORTHO05D005572 1.5e-95 353.2 217 82.0
AUR62012543 Chenopodium quinoa HOM05D004770 ORTHO05D005572 2.5e-95 352.4 206 85.0
Sopen08g001150 Solanum pennellii HOM05D004770 ORTHO05D005572 4.3e-95 351.7 227 79.7
vmacro14906 Vaccinium macrocarpon HOM05D004770 ORTHO05D005572 7.3e-95 350.9 214 82.7
VMungo0720G0347 Vigna mungo HOM05D004770 ORTHO05D005572 1.6e-94 349.7 214 81.3
Zm00001eb222890 Zea mays HOM05D004770 ORTHO05D005572 2.8e-94 349.0 227 74.9
Haze_04673 Corylus avellana HOM05D004770 ORTHO05D005572 6.2e-94 347.8 225 77.8
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 6.2e-94 347.8 204 84.3
Lj3g0010058 Lotus japonicus HOM05D004770 ORTHO05D005572 9.0e-93 344.0 216 79.2
MBI15_g39353_MAGBIO Magnolia biondii HOM05D004770 ORTHO05D005572 9.0e-93 344.0 205 82.4
ATR0665G226 Amborella trichopoda HOM05D004770 ORTHO05D005572 2.6e-92 342.4 203 83.7
Cpa.g.sc41.63 Carica papaya HOM05D004770 ORTHO05D005572 2.6e-92 342.4 214 80.4
Nitab4.5_0004355g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 2.6e-92 342.4 214 80.8
TPR.G25688 Trifolium pratense HOM05D004770 ORTHO05D005572 2.6e-92 342.4 213 80.3
DCAR_002713 Daucus carota HOM05D004770 ORTHO05D005572 3.4e-92 342.0 214 78.0
PGSC0003DMG400017838 Solanum tuberosum HOM05D004770 ORTHO05D005572 9.9e-92 340.5 214 81.3
Psat2g184920 Pisum sativum HOM05D004770 ORTHO05D005572 2.9e-91 339.0 265 67.5
Hund02843 Selenicereus undatus HOM05D004770 ORTHO05D005572 2.7e-89 332.4 214 77.1
PSO210G1988 Papaver somniferum HOM05D004770 ORTHO05D005572 4.6e-89 331.6 227 74.4
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 3.9e-88 328.6 202 84.2
SEGI_22603 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 3.1e-85 318.9 214 73.8
Lj2g0018175 Lotus japonicus HOM05D004770 ORTHO05D005572 1.7e-83 313.2 195 79.0
QL12p020786 Quercus lobata HOM05D004770 ORTHO05D005572 3.8e-83 312.0 190 81.1
SEGI_19127 Sequoiadendron giganteum HOM05D004770 ORTHO05D005572 1.4e-82 310.1 212 72.2
Nitab4.5_0006132g0020 Nicotiana tabacum HOM05D004770 ORTHO05D005572 9.3e-82 307.4 195 78.5
CAN.G1549.26 Capsicum annuum HOM05D004770 ORTHO05D005572 1.0e-80 303.9 227 71.4
Sp5g00290 Schrenkiella parvula HOM05D004770 ORTHO05D005572 1.0e-80 303.9 164 93.3
Peaxi162Scf00783g00122 Petunia axillaris HOM05D004770 ORTHO05D005572 1.5e-79 300.1 191 78.5
Mapoly0133s0052 Marchantia polymorpha HOM05D004770 ORTHO05D005572 4.3e-79 298.5 227 66.5
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 9.6e-79 297.4 160 93.8
Glyma.17G044400 Glycine max HOM05D004770 ORTHO05D005572 7.6e-76 287.7 169 83.4
Pp3c15_20330 Physcomitrium patens HOM05D004770 ORTHO05D005572 1.3e-75 287.0 224 65.6
SMO358G0317 Selaginella moellendorffii HOM05D004770 ORTHO05D005572 2.1e-73 279.6 220 66.4
Lj6g0011383 Lotus japonicus HOM05D004770 ORTHO05D005572 2.1e-70 269.6 164 80.5
CSS0010466 Camellia sinensis var. sinensis HOM05D004770 ORTHO05D005572 2.4e-69 266.2 229 64.6
Manes.05G078700 Manihot esculenta HOM05D004770 ORTHO05D005572 2.0e-68 263.1 227 64.3
AagrBONN_evm.TU.Sc2ySwM_362.2288 Anthoceros agrestis HOM05D004770 ORTHO05D005572 2.6e-68 262.7 209 63.6
QL01p011010 Quercus lobata HOM05D004770 ORTHO05D005572 4.5e-68 261.9 193 71.0
FvH4_2g23150 Fragaria vesca HOM05D004770 ORTHO05D005572 3.2e-66 255.8 197 69.0
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 1.2e-65 253.8 150 82.7
Sc05g0001180 Simmondsia chinensis HOM05D004770 ORTHO05D005572 4.8e-62 241.9 153 77.8
CBR_g40454 Chara braunii HOM05D004770 ORTHO05D005572 2.4e-61 239.6 247 52.2
Lsat_1_v5_gn_3_83521 Lactuca sativa HOM05D004770 ORTHO05D005572 5.9e-60 235.0 157 77.1
MCO10G359 Micromonas commoda HOM05D004770 ORTHO05D005572 1.2e-57 227.3 215 55.3
Psat6g025640 Pisum sativum HOM05D004770 ORTHO05D005572 1.1e-50 204.1 201 58.7
SHI22269 Sapria himalayana HOM05D004770 ORTHO05D005572 1.4e-48 197.2 131 73.3
Actinidia09114 Actinidia chinensis HOM05D004770 ORTHO05D005572 2.3e-40 169.9 115 71.3
Zm00001eb031460 Zea mays HOM05D004770 ORTHO05D005572 2.0e-39 166.8 124 66.1
RcHm_v2.0_Chr3g0476231 Rosa chinensis HOM05D004770 ORTHO05D005572 4.8e-38 162.2 108 75.9
Actinidia21133 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.1e-29 132.9 109 64.2
Actinidia21134 Actinidia chinensis HOM05D004770 ORTHO05D005572 3.1e-29 132.9 89 73.0
Zm00001eb432290 Zea mays HOM05D004770 ORTHO05D005572 9.1e-29 131.3 92 66.3
Glyma.02G191000 Glycine max HOM05D004770 ORTHO05D005572 1.4e-24 117.5 135 49.6
TAR633G1205 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.8e-24 117.1 105 62.9
AT1G08120 Arabidopsis thaliana HOM05D004770 ORTHO05D005572 1.7e-19 100.5 70 77.1
BcaC03g17841 Brassica carinata HOM05D004770 ORTHO05D005572 2.3e-19 100.1 68 76.5
TAR633G0687 Trochodendron aralioides HOM05D004770 ORTHO05D005572 6.6e-19 98.6 51 94.1
CDE04G0604 Ceratophyllum demersum HOM05D004770 ORTHO05D005572 1.6e-17 94.0 63 69.8
TAR636G2941 Trochodendron aralioides HOM05D004770 ORTHO05D005572 1.1e-13 81.3 97 46.4
GSVIVG01020385001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.4e-13 80.1 114 43.0
Cre06.g306800 Chlamydomonas reinhardtii HOM05D004770 ORTHO05D005572 2.0e-12 77.0 208 29.8
GSVIVG01017585001 Vitis vinifera HOM05D004770 ORTHO05D005572 2.3e-08 63.5 63 57.1


User provided reference genes

Program Settings