Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 0.0e+00 1949.1 996 100.0
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 0.0e+00 1900.6 996 98.0
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 0.0e+00 1737.2 1015 90.4
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 0.0e+00 1734.5 1015 90.3
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 0.0e+00 1733.8 1015 90.2
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 0.0e+00 1122.5 1092 63.5
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 4.7e-194 682.6 1152 45.4
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 8.8e-193 678.3 1179 44.2
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 1.5e-192 677.6 1161 45.0
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 2.2e-191 673.7 1161 44.8
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 1.1e-190 671.4 1165 44.6
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 4.2e-187 659.4 1076 45.9
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.0e-185 654.8 1191 43.7
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 1.8e-182 644.0 1157 43.6
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 1.1e-163 581.6 1148 40.9
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 5.1e-148 529.6 1077 39.6
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 5.6e-147 526.2 1075 39.8
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 1.6e-146 524.6 1078 39.4
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 1.6e-146 524.6 1078 39.4
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 8.1e-146 522.3 1075 39.7
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 1.9e-139 501.1 1122 38.9
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 3.8e-135 486.9 1111 39.0
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 7.8e-133 479.2 1113 38.6
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 5.6e-131 473.0 1109 38.3
BcaNung04838 Brassica carinata HOM05D004021 ORTHO05D003767 6.2e-114 416.4 275 80.4
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 1.6e-109 401.7 1079 34.7
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 9.4e-78 296.2 694 38.8
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 1.8e-73 282.0 695 37.7
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 2.6e-51 208.4 1256 27.9
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 4.1e-49 201.1 1251 28.1
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 7.0e-49 200.3 1254 27.5
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 4.6e-48 197.6 1242 26.9
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 5.9e-48 197.2 1248 27.2
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.1e-45 188.7 1244 26.5
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 5.2e-44 184.1 1261 26.2
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 2.6e-43 181.8 1246 26.4
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.4e-43 181.4 1241 26.8
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 7.8e-40 170.2 1252 25.6
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 1.7e-39 169.1 1286 24.8
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 2.6e-35 155.2 1275 24.7
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.4e-35 154.8 622 31.2
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.4e-33 149.4 1256 23.9
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 9.2e-33 146.7 1253 24.3
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 2.7e-32 145.2 1269 25.6
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 3.5e-32 144.8 1279 23.9
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 4.6e-32 144.4 1253 24.5
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 4.6e-32 144.4 1279 24.8
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 1.3e-31 142.9 875 27.3
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 3.0e-31 141.7 1282 23.9
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 3.9e-31 141.4 1251 23.9
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 9.5e-30 136.7 1256 24.1
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 8.1e-29 133.7 1291 24.4
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 2.3e-28 132.1 764 26.6
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 1.5e-27 129.4 1161 26.0
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 1.7e-26 125.9 1194 24.7
BcaNung04839 Brassica carinata HOM05D004021 ORTHO05D003767 2.9e-26 125.2 77 87.0
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 4.9e-26 124.4 1249 25.5
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 4.1e-25 121.3 1135 23.5
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 6.0e-24 117.5 383 33.2
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.3e-23 115.5 536 27.8
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 9.6e-22 110.2 600 26.5
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 7.6e-19 100.5 1320 23.3
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 7.6e-19 100.5 1181 23.3
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 1.3e-18 99.8 521 28.4
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 2.2e-18 99.0 1223 24.0
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 4.9e-18 97.8 1145 23.6
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 6.4e-18 97.4 1296 23.1
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 6.4e-18 97.4 1223 24.1
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 8.4e-18 97.1 1192 23.4
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 2.4e-17 95.5 1219 23.1
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 5.4e-17 94.4 1186 23.2
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 1.2e-16 93.2 1192 23.7
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 2.1e-16 92.4 1204 23.3
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 3.5e-16 91.7 1214 23.1
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 3.9e-15 88.2 81 46.9
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 8.7e-15 87.0 104 43.3
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 1.5e-14 86.3 1123 23.2
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.9e-14 85.9 1259 23.2
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 1.9e-14 85.9 495 25.5
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 3.3e-14 85.1 1232 23.9
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 9.6e-14 83.6 529 27.2
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 1.6e-13 82.8 1204 23.5
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.1e-13 82.4 510 25.3
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 6.2e-13 80.9 445 28.5
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.1e-12 80.1 1127 23.4
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 1.4e-12 79.7 82 47.6
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 3.1e-12 78.6 503 25.6
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 3.1e-12 78.6 1146 23.4
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 5.3e-12 77.8 243 32.1
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 6.9e-12 77.4 1212 22.9
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 9.0e-12 77.0 868 22.7
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 1.2e-11 76.6 1222 22.0
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 2.0e-11 75.9 572 27.1
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 4.4e-11 74.7 1246 22.5
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 4.4e-11 74.7 79 43.0
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 5.8e-11 74.3 80 43.8
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 5.8e-11 74.3 912 24.3
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 5.8e-11 74.3 84 42.9
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 5.8e-11 74.3 107 39.3
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 7.6e-11 73.9 82 45.1
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 9.9e-11 73.6 91 42.9
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 1.3e-10 73.2 522 25.1
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 2.2e-10 72.4 565 26.2
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.9e-10 72.0 190 27.9
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 3.8e-10 71.6 1045 22.9
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 4.9e-10 71.2 636 23.6
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 4.9e-10 71.2 87 43.7
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 6.4e-10 70.9 95 41.1
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 1.1e-09 70.1 238 26.9
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 1.1e-09 70.1 84 40.5
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 1.4e-09 69.7 83 43.4
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 1.9e-09 69.3 77 41.6
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 1.9e-09 69.3 118 34.7
A10p26230 Brassica napus HOM05D018796 ORTHO05D023922 2.4e-09 68.9 135 33.3
BraA10t44680Z Brassica rapa HOM05D018796 ORTHO05D023922 2.4e-09 68.9 135 33.3
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 2.4e-09 68.9 96 36.5
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 3.2e-09 68.6 285 29.5
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 3.2e-09 68.6 498 25.5
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 5.4e-09 67.8 133 33.1
AUR62041723 Chenopodium quinoa HOM05D012164 ORTHO05D003767 5.4e-09 67.8 93 38.7
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 9.3e-09 67.0 68 42.6
Lalb_Chr14g0372341 Lupinus albus HOM05D004021 ORTHO05D003767 1.2e-08 66.6 111 31.5
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.2e-08 66.6 1192 21.9
BcaC04g19217 Brassica carinata HOM05D018796 ORTHO05D023922 1.6e-08 66.2 135 34.1
C09p65300 Brassica napus HOM05D018796 ORTHO05D023922 1.6e-08 66.2 135 34.1
BolC9t59357H Brassica oleracea HOM05D018796 ORTHO05D023922 1.6e-08 66.2 135 34.1
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 3.5e-08 65.1 328 26.2
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 3.5e-08 65.1 91 38.5
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 3.5e-08 65.1 1161 22.7
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 4.6e-08 64.7 77 37.7
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 6.0e-08 64.3 1053 23.3
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 6.0e-08 64.3 285 29.5
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 1.0e-07 63.5 73 43.8
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 1.7e-07 62.8 1215 22.1
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 3.0e-07 62.0 1213 21.4
Atru.chr7.2138 Acer truncatum HOM05D004021 ORTHO05D003767 3.9e-07 61.6 85 47.1
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 5.1e-07 61.2 63 47.6
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 5.1e-07 61.2 1066 21.9
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 6.6e-07 60.8 79 39.2
HPP92_026866 Vanilla planifolia HOM05D004021 ORTHO05D003767 1.1e-06 60.1 64 42.2
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 1.5e-06 59.7 496 24.8
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 2.5e-06 58.9 163 30.7
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 2.5e-06 58.9 490 23.7
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 2.5e-06 58.9 98 32.7
SEGI_38675 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 3.3e-06 58.5 64 42.2
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 5.6e-06 57.8 134 32.1
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 7.4e-06 57.4 1226 20.1
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 9.6e-06 57.0 277 24.5
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 9.6e-06 57.0 849 23.3


User provided reference genes

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