Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p36270 Brassica napus HOM05D007649 ORTHO05D009668 2.8e-40 168.3 94 100.0
BraA06t26549Z Brassica rapa HOM05D007649 ORTHO05D009668 2.8e-40 168.3 94 100.0
Thhalv10005188m.g Eutrema salsugineum HOM05D007649 ORTHO05D009668 2.1e-35 152.1 99 87.9
Sp2g21960 Schrenkiella parvula HOM05D007649 ORTHO05D009668 1.8e-34 149.1 99 86.9
C02p59430 Brassica napus HOM05D007649 ORTHO05D009668 3.9e-34 147.9 92 88.0
CARHR187800 Cardamine hirsuta HOM05D007649 ORTHO05D009668 1.5e-33 146.0 96 86.5
AL6G37400 Arabidopsis lyrata HOM05D007649 ORTHO05D009668 4.3e-33 144.4 96 85.4
BolC7t44754H Brassica oleracea HOM05D007649 ORTHO05D009668 7.4e-33 143.7 123 73.2
AT5G25570 Arabidopsis thaliana HOM05D007649 ORTHO05D009668 6.2e-32 140.6 96 83.3
Carub.0006s2344 Capsella rubella HOM05D007649 ORTHO05D009668 3.1e-31 138.3 96 82.3
Aa31LG11G4690 Aethionema arabicum HOM05D007649 ORTHO05D009668 4.5e-30 134.4 99 79.8
BolC2t12006H Brassica oleracea HOM05D007649 ORTHO05D009668 6.4e-29 130.6 123 65.0
THA.LOC104799213 Tarenaya hassleriana HOM05D007649 ORTHO05D009668 2.5e-28 128.6 99 74.7
Duzib150G1676 Durio zibethinus HOM05D007649 ORTHO05D009668 1.8e-23 112.5 97 66.0
Cpa.g.sc205.32 Carica papaya HOM05D007649 ORTHO05D009668 2.4e-23 112.1 92 65.2
QL12p031020 Quercus lobata HOM05D007649 ORTHO05D009668 9.0e-23 110.2 93 63.4
Dinv30235 Davidia involucrata HOM05D007649 ORTHO05D009668 1.5e-22 109.4 93 63.4
CiPaw.08G016800 Carya illinoinensis HOM05D007649 ORTHO05D009668 1.3e-21 106.3 92 64.1
Atru.chr7.2308 Acer truncatum HOM05D007649 ORTHO05D009668 2.9e-21 105.1 97 58.8
PGR044G0128 Punica granatum HOM05D007649 ORTHO05D009668 2.9e-21 105.1 96 61.5
Gohir.D07G028200 Gossypium hirsutum HOM05D007649 ORTHO05D009668 6.5e-21 104.0 99 61.6
Gorai.001G029500 Gossypium raimondii HOM05D007649 ORTHO05D009668 6.5e-21 104.0 99 61.6
Haze_21646 Corylus avellana HOM05D007649 ORTHO05D009668 1.1e-20 103.2 96 61.5
Actinidia13297 Actinidia chinensis HOM05D007649 ORTHO05D009668 1.9e-20 102.4 92 62.0
GSVIVG01035747001 Vitis vinifera HOM05D007649 ORTHO05D009668 3.2e-20 101.7 92 58.7
Duzib168G0100 Durio zibethinus HOM05D007649 ORTHO05D009668 4.2e-20 101.3 94 61.7
Nn2g11782 Nelumbo nucifera HOM05D007649 ORTHO05D009668 4.2e-20 101.3 89 59.6
Migut.N01074 Erythranthe guttata HOM05D007649 ORTHO05D009668 9.3e-20 100.1 92 57.6
TAR383G0510 Trochodendron aralioides HOM05D007649 ORTHO05D009668 1.2e-19 99.8 89 62.9
HanXRQChr10g0313021 Helianthus annuus HOM05D007649 ORTHO05D009668 3.5e-19 98.2 89 59.6
TWI63G0355 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 6.0e-19 97.4 94 56.4
MELO3C003657.2 Cucumis melo HOM05D007649 ORTHO05D009668 5.1e-18 94.4 99 52.5
Manes.16G069200 Manihot esculenta HOM05D007649 ORTHO05D009668 5.1e-18 94.4 77 64.9
Prupe.1G464700 Prunus persica HOM05D007649 ORTHO05D009668 6.7e-18 94.0 94 56.4
Aqoxy7G01751 Aquilegia oxysepala HOM05D007649 ORTHO05D009668 8.7e-18 93.6 93 55.9
CsaV3_3G046810 Cucumis sativus L. HOM05D007649 ORTHO05D009668 1.1e-17 93.2 98 52.0
CANSAT25G0191 Cannabis sativa HOM05D007649 ORTHO05D009668 1.5e-17 92.8 95 58.9
ECA233G5733 Erigeron canadensis HOM05D007649 ORTHO05D009668 2.5e-17 92.0 82 58.5
CAN.G1384.1 Capsicum annuum HOM05D007649 ORTHO05D009668 4.3e-17 91.3 77 57.1
PSO063G4106 Papaver somniferum HOM05D007649 ORTHO05D009668 9.7e-17 90.1 91 60.4
RcHm_v2.0_Chr1g0325561 Rosa chinensis HOM05D007649 ORTHO05D009668 9.7e-17 90.1 101 53.5
ClCG05G017300 Citrullus lanatus HOM05D007649 ORTHO05D009668 1.3e-16 89.7 98 50.0
FvH4_7g03290 Fragaria vesca HOM05D007649 ORTHO05D009668 1.6e-16 89.4 95 55.8
Cc08_g08160 Coffea canephora HOM05D007649 ORTHO05D009668 3.7e-16 88.2 91 48.4
Ciclev10010030m.g Citrus clementina HOM05D007649 ORTHO05D009668 6.3e-16 87.4 97 54.6
Peaxi162Scf00105g01010 Petunia axillaris HOM05D007649 ORTHO05D009668 6.3e-16 87.4 77 55.8
SalBow4G3148 Salvia bowleyana HOM05D007649 ORTHO05D009668 6.3e-16 87.4 94 51.1
Lsat_1_v5_gn_6_8481 Lactuca sativa HOM05D007649 ORTHO05D009668 8.2e-16 87.0 90 54.4
Nitab4.5_0012591g0010 Nicotiana tabacum HOM05D007649 ORTHO05D009668 1.4e-15 86.3 77 54.5
Rhsim07G0149600 Rhododendron simsii HOM05D007649 ORTHO05D009668 3.1e-15 85.1 68 60.3
Sed0003009 Sechium edule HOM05D007649 ORTHO05D009668 3.1e-15 85.1 101 50.5
Nitab4.5_0000250g0070 Nicotiana tabacum HOM05D007649 ORTHO05D009668 4.1e-15 84.7 77 51.9
MD08G1134800 Malus domestica HOM05D007649 ORTHO05D009668 5.3e-15 84.3 93 52.7
Sopen08g021900 Solanum pennellii HOM05D007649 ORTHO05D009668 6.9e-15 84.0 77 53.2
arahy.Tifrunner.gnm1.ann1.0NF80D Arachis hypogaea HOM05D007649 ORTHO05D009668 1.2e-14 83.2 75 60.0
arahy.Tifrunner.gnm1.ann1.3N1A5Y Arachis hypogaea HOM05D007649 ORTHO05D009668 1.2e-14 83.2 75 60.0
CSS0042406 Camellia sinensis var. sinensis HOM05D007649 ORTHO05D009668 1.2e-14 83.2 63 66.7
Potri.006G245100 Populus trichocarpa HOM05D007649 ORTHO05D009668 1.2e-14 83.2 76 60.5
Potri.012G125000 Populus trichocarpa HOM05D007649 ORTHO05D009668 1.5e-14 82.8 76 60.5
Sed0022915 Sechium edule HOM05D007649 ORTHO05D009668 2.0e-14 82.4 96 50.0
TPR.G12493 Trifolium pratense HOM05D007649 ORTHO05D009668 2.0e-14 82.4 85 54.1
Glyma.06G074500 Glycine max HOM05D007649 ORTHO05D009668 2.6e-14 82.0 85 55.3
MBI04_g10458_MAGBIO Magnolia biondii HOM05D007649 ORTHO05D009668 2.6e-14 82.0 64 64.1
Eucgr.C02878 Eucalyptus grandis HOM05D007649 ORTHO05D009668 7.7e-14 80.5 71 57.7
Lj1g0000027 Lotus japonicus HOM05D007649 ORTHO05D009668 7.7e-14 80.5 85 52.9
Medtr3g108310 Medicago truncatula HOM05D007649 ORTHO05D009668 1.0e-13 80.1 89 53.9
CDE05G1266 Ceratophyllum demersum HOM05D007649 ORTHO05D009668 1.3e-13 79.7 87 51.7
Oeu033993.1 Olea europaea HOM05D007649 ORTHO05D009668 2.2e-13 79.0 64 64.1
Oeu033995.1 Olea europaea HOM05D007649 ORTHO05D009668 2.2e-13 79.0 64 64.1
EL10Ac2g02528 Beta vulgaris HOM05D007649 ORTHO05D009668 5.0e-13 77.8 89 47.2
Glyma.04G073400 Glycine max HOM05D007649 ORTHO05D009668 6.5e-13 77.4 84 51.2
Sc09g0008910 Simmondsia chinensis HOM05D007649 ORTHO05D009668 6.5e-13 77.4 89 48.3
Psat5g025760 Pisum sativum HOM05D007649 ORTHO05D009668 1.1e-12 76.6 86 52.3
FAN10G0583 Fragaria x ananassa HOM05D007649 ORTHO05D009668 3.2e-12 75.1 122 43.4
Phvul.009G099200 Phaseolus vulgaris HOM05D007649 ORTHO05D009668 5.5e-12 74.3 85 48.2
Solyc08g067980.3 Solanum lycopersicum HOM05D007649 ORTHO05D009668 1.2e-11 73.2 62 58.1
Sabra06G0191900 Salix brachista HOM05D007649 ORTHO05D009668 1.6e-11 72.8 65 60.0
Hund02998 Selenicereus undatus HOM05D007649 ORTHO05D009668 2.1e-11 72.4 75 48.0
TWI34G1739 Tripterygium wilfordii HOM05D007649 ORTHO05D009668 2.1e-11 72.4 57 66.7
PGSC0003DMG400014488 Solanum tuberosum HOM05D007649 ORTHO05D009668 6.1e-11 70.9 57 59.6
AUR62024825 Chenopodium quinoa HOM05D007649 ORTHO05D009668 1.4e-10 69.7 95 42.1
AUR62032390 Chenopodium quinoa HOM05D007649 ORTHO05D009668 1.8e-10 69.3 75 42.7
Gohir.A07G024600 Gossypium hirsutum HOM05D007649 ORTHO05D009668 3.9e-10 68.2 85 49.4
vmacro05350 Vaccinium macrocarpon HOM05D007649 ORTHO05D009668 1.1e-09 66.6 51 64.7
ATR0037G059 Amborella trichopoda HOM05D007649 ORTHO05D009668 2.0e-09 65.9 90 42.2
Ah.12g060320 Amaranthus hybridus HOM05D007649 ORTHO05D009668 4.3e-09 64.7 77 45.5
FAN06G3614 Fragaria x ananassa HOM05D007649 ORTHO05D009668 4.3e-09 64.7 56 62.5
Os05g0180700 Oryza sativa ssp. japonica HOM05D007649 ORTHO05D009668 2.2e-08 62.4 90 41.1
FAN03G3370 Fragaria x ananassa HOM05D007649 ORTHO05D009668 9.1e-07 57.0 108 40.7
Prupe.3G140100 Prunus persica HOM05D007649 ORTHO05D009668 1.5e-06 56.2 52 59.6
Actinidia14648 Actinidia chinensis HOM05D007649 ORTHO05D009668 3.4e-06 55.1 58 53.4


User provided reference genes

Program Settings