Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 1.5e-87 326.2 174 100.0
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 1.5e-87 326.2 174 100.0
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 5.5e-82 307.8 176 95.5
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 6.0e-81 304.3 176 94.9
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 8.2e-54 214.2 189 70.4
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 7.2e-50 201.1 185 67.6
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 1.6e-49 199.9 170 70.0
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 7.4e-47 191.0 150 72.0
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 7.7e-44 181.0 151 70.2
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 2.9e-43 179.1 155 71.0
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 4.2e-42 175.3 187 64.7
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 4.7e-41 171.8 192 63.0
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 6.1e-41 171.4 171 62.0
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 2.0e-39 166.4 186 59.7
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 9.7e-39 164.1 171 60.2
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 9.7e-39 164.1 171 60.2
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 1.6e-33 146.7 145 63.4
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 1.6e-33 146.7 145 63.4
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 3.6e-33 145.6 157 61.1
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 7.5e-31 137.9 175 50.9
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 7.5e-31 137.9 180 50.6
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 9.8e-31 137.5 167 56.3
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 1.0e-27 127.5 182 51.6
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 1.0e-27 127.5 182 51.6
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 1.0e-27 127.5 181 53.0
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 2.3e-27 126.3 182 51.6
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 5.0e-27 125.2 179 51.4
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 5.0e-27 125.2 179 51.4
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 5.0e-27 125.2 171 55.0
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 6.5e-27 124.8 169 52.7
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.1e-26 124.0 177 50.3
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 1.5e-26 123.6 181 51.4
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 2.5e-26 122.9 186 48.4
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 2.5e-26 122.9 183 50.3
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 7.2e-26 121.3 184 50.0
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 1.2e-25 120.6 169 53.8
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 1.2e-25 120.6 167 52.1
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 1.2e-25 120.6 185 50.3
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 2.1e-25 119.8 183 48.6
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.3e-24 116.3 201 39.3
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 5.2e-24 115.2 192 41.1
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 8.9e-24 114.4 117 59.8
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 1.2e-23 114.0 202 41.1
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 1.5e-23 113.6 188 44.1
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 1.5e-23 113.6 116 60.3
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 1.5e-23 113.6 185 47.0
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.5e-23 113.6 189 41.8
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 2.0e-23 113.2 169 50.3
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 4.4e-23 112.1 169 49.1
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 4.4e-23 112.1 175 45.1
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 5.7e-23 111.7 169 49.1
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 5.7e-23 111.7 192 39.6
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.7e-23 111.7 201 38.8
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 7.5e-23 111.3 118 61.0
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.8e-23 110.9 187 42.8
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.3e-22 110.5 187 42.2
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.2e-22 109.8 187 42.2
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 2.2e-22 109.8 198 39.4
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 2.8e-22 109.4 169 49.1
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.8e-22 109.4 187 41.2
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.8e-22 109.4 181 43.1
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.8e-22 109.4 187 42.2
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.7e-22 109.0 187 42.2
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 4.9e-22 108.6 187 41.7
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 4.9e-22 108.6 180 42.8
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 6.3e-22 108.2 117 58.1
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 6.3e-22 108.2 117 58.1
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 6.3e-22 108.2 203 40.4
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.3e-22 107.8 187 41.2
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 5.4e-21 105.1 187 43.3
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 5.4e-21 105.1 187 40.1
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 9.2e-21 104.4 196 39.8
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 9.2e-21 104.4 197 42.6
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 9.2e-21 104.4 190 43.2
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 3.5e-20 102.4 182 38.5
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 5.9e-20 101.7 190 42.1
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 7.8e-20 101.3 190 39.5
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 7.8e-20 101.3 190 40.0
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 7.8e-20 101.3 190 39.5
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 7.8e-20 101.3 195 41.0
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.3e-19 100.5 191 39.8
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.3e-19 100.5 190 39.5
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 1.7e-19 100.1 187 41.7
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 1.7e-19 100.1 197 36.5
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 2.9e-19 99.4 185 39.5
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.9e-19 99.4 181 38.7
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 5.0e-19 98.6 190 40.5
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 1.5e-18 97.1 100 56.0
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 1.5e-18 97.1 198 39.9
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 4.3e-18 95.5 189 41.3
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 5.6e-18 95.1 186 40.9
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 7.3e-18 94.7 198 39.9
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 1.6e-17 93.6 181 42.0
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.6e-17 93.6 189 40.7
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 1.6e-17 93.6 190 37.4
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 2.1e-17 93.2 181 40.3
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 2.1e-17 93.2 190 39.5
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 3.6e-17 92.4 188 41.0
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 6.1e-17 91.7 179 40.2
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 6.1e-17 91.7 178 36.5
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 8.0e-17 91.3 198 38.4
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 1.0e-16 90.9 180 37.2
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 1.4e-16 90.5 236 33.5
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 1.4e-16 90.5 189 37.0
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.8e-16 90.1 149 38.3
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 1.8e-16 90.1 161 41.0
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 2.3e-16 89.7 175 34.9
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 5.2e-16 88.6 182 38.5
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 5.2e-16 88.6 183 38.8
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 5.2e-16 88.6 204 36.8
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 8.9e-16 87.8 116 45.7
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 1.2e-15 87.4 202 34.2
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.2e-15 87.4 196 34.2
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.2e-15 87.4 196 34.2
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 1.5e-15 87.0 195 37.9
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 1.5e-15 87.0 188 37.2
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 2.0e-15 86.7 177 37.9
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 2.6e-15 86.3 208 33.7
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 3.4e-15 85.9 196 39.8
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 3.4e-15 85.9 192 34.4
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 4.4e-15 85.5 186 36.6
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 5.8e-15 85.1 186 36.0
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 5.8e-15 85.1 190 38.9
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 7.5e-15 84.7 156 38.5
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 7.5e-15 84.7 161 35.4
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 1.3e-14 84.0 169 37.3
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 2.9e-14 82.8 201 35.8
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 3.7e-14 82.4 201 36.8
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 6.4e-14 81.6 186 35.5
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 1.1e-13 80.9 181 34.8
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 3.2e-13 79.3 191 35.6
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.4e-13 78.6 131 42.7
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.4e-13 78.6 131 42.7
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 7.0e-13 78.2 199 35.2
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 1.2e-12 77.4 204 35.8
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 1.6e-12 77.0 190 33.7
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 1.6e-12 77.0 218 32.6
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 2.7e-12 76.3 86 57.0
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 3.5e-12 75.9 191 35.1
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 1.0e-11 74.3 194 37.1
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 2.3e-11 73.2 149 40.3
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 3.9e-11 72.4 154 37.0
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 2.5e-10 69.7 165 34.5
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 3.3e-10 69.3 93 41.9
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 7.3e-10 68.2 77 48.1
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 7.3e-10 68.2 192 32.3
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 9.5e-10 67.8 215 32.6
BraA08t33004Z Brassica rapa HOM05D004036 ORTHO05D004576 2.8e-09 66.2 50 70.0
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 2.8e-09 66.2 157 35.0
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 1.1e-08 64.3 159 34.6
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 1.8e-08 63.5 154 33.8
BolC2t06459H Brassica oleracea HOM05D004036 ORTHO05D004576 3.1e-08 62.8 100 47.0
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 4.0e-08 62.4 168 33.9
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.2e-08 62.0 53 60.4
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.2e-08 62.0 53 60.4
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 1.2e-07 60.8 133 36.8
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 1.5e-07 60.5 147 32.7
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 3.4e-07 59.3 232 27.6
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 4.4e-07 58.9 166 32.5
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 7.5e-07 58.2 166 31.3
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 1.7e-06 57.0 152 32.9
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 2.9e-06 56.2 140 32.1
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 4.9e-06 55.5 184 31.5


User provided reference genes

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