Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 3.9e-109 398.3 220 100.0
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 3.9e-109 398.3 220 100.0
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 2.2e-104 382.5 222 95.5
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 1.2e-102 376.7 220 93.6
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 1.7e-101 372.9 245 87.3
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 1.9e-100 369.4 245 86.5
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 1.5e-92 343.2 197 93.9
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 1.5e-92 343.2 220 84.1
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 1.0e-85 320.5 217 80.2
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 2.5e-84 315.8 222 80.2
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 2.5e-84 315.8 222 80.2
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 4.3e-84 315.1 204 79.9
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 3.7e-83 312.0 217 80.2
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 1.4e-82 310.1 220 77.3
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 3.1e-82 308.9 218 75.2
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 4.0e-82 308.5 217 79.3
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 7.6e-81 304.3 221 77.8
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 2.3e-77 292.7 221 71.9
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 5.9e-73 278.1 200 71.5
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 8.7e-69 264.2 205 69.3
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 5.5e-63 245.0 207 71.0
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 1.1e-58 230.7 213 56.8
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 2.2e-56 223.0 217 57.1
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 2.9e-56 222.6 213 56.8
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 6.5e-56 221.5 213 58.7
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.4e-55 220.3 217 56.2
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.9e-55 219.9 217 56.7
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 4.2e-55 218.8 201 55.7
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 9.4e-55 217.6 191 61.3
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 1.6e-54 216.9 202 57.9
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 2.7e-54 216.1 203 57.1
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 6.1e-54 214.9 217 55.8
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 6.1e-54 214.9 217 55.8
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 7.9e-54 214.5 200 58.5
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 7.9e-54 214.5 219 53.0
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 1.0e-53 214.2 218 56.0
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 1.0e-53 214.2 205 53.7
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 3.0e-53 212.6 215 56.3
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 3.0e-53 212.6 216 56.5
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 3.9e-53 212.2 212 55.2
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 3.9e-53 212.2 219 52.5
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 1.1e-52 210.7 183 62.8
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 1.5e-52 210.3 200 54.0
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 1.5e-52 210.3 199 53.3
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 2.0e-52 209.9 202 56.4
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 2.0e-52 209.9 213 54.5
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 3.3e-52 209.1 201 57.2
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 3.3e-52 209.1 210 55.7
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 7.4e-52 208.0 201 53.7
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 9.7e-52 207.6 202 55.4
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 1.3e-51 207.2 212 54.2
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.3e-51 207.2 210 55.2
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 1.3e-51 207.2 205 54.6
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.3e-51 207.2 199 52.3
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 2.8e-51 206.1 202 55.0
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 3.7e-51 205.7 204 53.4
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 3.7e-51 205.7 218 53.7
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 4.8e-51 205.3 185 60.5
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 4.8e-51 205.3 210 54.8
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 4.8e-51 205.3 196 53.6
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 3.1e-50 202.6 198 55.1
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 4.1e-50 202.2 198 53.5
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 1.6e-49 200.3 208 51.0
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 3.5e-49 199.1 192 54.7
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 4.5e-49 198.7 218 51.8
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 4.5e-49 198.7 205 54.1
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 7.7e-49 198.0 189 56.6
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 7.7e-49 198.0 201 54.7
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 1.7e-48 196.8 190 55.3
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 1.7e-48 196.8 178 55.6
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 2.2e-48 196.4 197 54.3
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 5.0e-48 195.3 211 51.2
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 5.0e-48 195.3 198 53.5
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 6.5e-48 194.9 198 52.5
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 8.5e-48 194.5 196 54.6
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 1.1e-47 194.1 197 53.3
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 3.2e-47 192.6 196 53.6
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 7.2e-47 191.4 196 54.1
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 9.4e-47 191.0 204 49.5
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.6e-46 190.3 214 51.9
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 1.6e-46 190.3 199 52.8
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 2.1e-46 189.9 199 50.3
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.7e-46 189.5 215 52.6
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 2.7e-46 189.5 215 52.1
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 6.1e-46 188.3 214 50.0
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 1.0e-45 187.6 204 52.0
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 1.0e-45 187.6 220 50.5
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 3.0e-45 186.0 201 50.2
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 8.8e-45 184.5 200 52.0
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.2e-44 184.1 201 48.8
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 1.2e-44 184.1 168 57.1
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 3.3e-44 182.6 221 51.6
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 2.2e-43 179.9 200 48.5
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 1.4e-42 177.2 199 49.7
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 2.4e-42 176.4 202 49.0
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 2.4e-42 176.4 198 46.0
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 4.1e-42 175.6 203 48.3
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 5.3e-42 175.3 200 49.5
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 5.3e-42 175.3 200 50.0
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 1.6e-41 173.7 202 45.5
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 2.0e-41 173.3 216 46.8
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 1.0e-40 171.0 198 50.0
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 2.2e-40 169.9 200 48.5
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 2.9e-40 169.5 200 48.5
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 8.5e-40 167.9 197 48.7
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 1.9e-39 166.8 192 47.4
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 1.0e-37 161.0 202 43.6
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 1.8e-37 160.2 147 53.1
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 2.8e-35 152.9 138 57.2
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 9.1e-34 147.9 192 43.8
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 5.9e-33 145.2 190 44.7
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 1.0e-32 144.4 202 41.6
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 2.2e-32 143.3 201 40.8
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 4.7e-30 135.6 215 39.1
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 2.3e-29 133.3 122 58.2
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 2.0e-28 130.2 195 43.6
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 4.9e-27 125.6 202 42.1
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 4.9e-27 125.6 119 58.0
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 2.7e-25 119.8 196 37.8
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 5.9e-25 118.6 197 37.6
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 2.3e-24 116.7 197 37.1
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 2.3e-24 116.7 197 37.1
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 2.5e-23 113.2 197 36.0
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 4.3e-23 112.5 85 63.5
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 2.1e-22 110.2 198 36.4
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 4.7e-22 109.0 198 34.8
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 1.5e-20 104.0 181 34.8
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 2.6e-20 103.2 196 33.2
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 7.5e-20 101.7 175 36.0
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 7.8e-17 91.7 182 33.0
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 1.3e-16 90.9 177 33.3
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 1.7e-16 90.5 190 34.2
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 6.6e-16 88.6 192 30.7
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 3.6e-14 82.8 171 32.7
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 4.9e-11 72.4 142 31.0
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 3.5e-09 66.2 95 31.6
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 7.8e-09 65.1 86 40.7
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 1.7e-08 63.9 139 33.8
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 1.9e-07 60.5 114 31.6
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 1.2e-06 57.8 58 50.0
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 2.8e-06 56.6 72 48.6
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 3.6e-06 56.2 50 46.0
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 6.2e-06 55.5 75 49.3


User provided reference genes

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