Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p35600 Brassica napus HOM05D000880 ORTHO05D009684 3.4e-131 473.0 612 100.0
C07p42940 Brassica napus HOM05D000880 ORTHO05D009684 6.5e-122 442.2 612 96.9
BraA06t26485Z Brassica rapa HOM05D000880 ORTHO05D009684 2.9e-114 416.8 591 98.6
BolC7t44823H Brassica oleracea HOM05D000880 ORTHO05D009684 1.2e-110 404.8 596 96.5
Sp2g22620 Schrenkiella parvula HOM05D000880 ORTHO05D009684 1.8e-92 344.4 593 91.9
Thhalv10003880m.g Eutrema salsugineum HOM05D000880 ORTHO05D009684 3.3e-81 307.0 290 85.2
CARHR188620 Cardamine hirsuta HOM05D000880 ORTHO05D009684 4.0e-79 300.1 292 84.2
Carub.0006s2268 Capsella rubella HOM05D000880 ORTHO05D009684 4.4e-78 296.6 292 82.9
AT5G24830 Arabidopsis thaliana HOM05D000880 ORTHO05D009684 4.6e-75 286.6 290 82.8
AL6G36470 Arabidopsis lyrata HOM05D000880 ORTHO05D009684 1.7e-74 284.6 290 82.1
BcaNung01260 Brassica carinata HOM05D000880 ORTHO05D009684 2.4e-68 264.2 160 83.8
Aa31LG10G9610 Aethionema arabicum HOM05D000880 ORTHO05D009684 2.4e-52 211.1 317 62.8
Aa31LG10G9680 Aethionema arabicum HOM05D000880 ORTHO05D009684 1.9e-49 201.4 321 66.7
Cfa013251 Carpinus fangiana HOM05D000880 ORTHO05D008158 3.1e-31 141.0 303 56.4
Actinidia06447 Actinidia chinensis HOM05D000880 ORTHO05D009684 9.4e-28 129.4 310 56.1
MD08G1133900 Malus domestica HOM05D000880 ORTHO05D009684 9.4e-28 129.4 302 54.3
Atru.chr7.2671 Acer truncatum HOM05D000880 ORTHO05D009684 1.2e-27 129.0 303 52.5
Cpa.g.sc10.206 Carica papaya HOM05D000880 ORTHO05D009684 6.1e-27 126.7 300 57.7
QL12p024656 Quercus lobata HOM05D000880 ORTHO05D009684 7.9e-27 126.3 307 55.0
Ciclev10007859m.g Citrus clementina HOM05D000880 ORTHO05D009684 1.8e-26 125.2 295 56.6
CiPaw.07G214800 Carya illinoinensis HOM05D000880 ORTHO05D009684 3.9e-26 124.0 312 55.1
Manes.07G088100 Manihot esculenta HOM05D000880 ORTHO05D009684 2.0e-25 121.7 297 53.2
Lj6C69T3 Lonicera japonica HOM05D000880 ORTHO05D009684 2.8e-24 117.9 300 52.3
TAR626G1204 Trochodendron aralioides HOM05D000880 ORTHO05D009684 3.1e-23 114.4 295 53.9
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 6.9e-23 113.2 315 51.1
Haze_21694 Corylus avellana HOM05D000880 ORTHO05D009684 1.2e-22 112.5 252 59.9
Prupe.1G462500 Prunus persica HOM05D000880 ORTHO05D009684 2.0e-22 111.7 324 50.3
RcHm_v2.0_Chr6g0312241 Rosa chinensis HOM05D000880 ORTHO05D009684 2.6e-22 111.3 304 53.0
arahy.Tifrunner.gnm1.ann1.CHY0RW Arachis hypogaea HOM05D000880 ORTHO05D009684 3.4e-22 110.9 315 51.1
CANSAT78G1387 Cannabis sativa HOM05D000880 ORTHO05D009684 4.5e-22 110.5 302 52.0
CSS0007644 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 7.7e-22 109.8 240 61.7
PGR044G0315 Punica granatum HOM05D000880 ORTHO05D009684 7.7e-22 109.8 309 51.1
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 1.7e-21 108.6 300 53.7
Dinv15656 Davidia involucrata HOM05D000880 ORTHO05D009684 1.7e-21 108.6 310 51.3
FAN20G2124 Fragaria x ananassa HOM05D000880 ORTHO05D009684 2.2e-21 108.2 305 53.4
FAN24G3119 Fragaria x ananassa HOM05D000880 ORTHO05D009684 2.2e-21 108.2 306 53.3
Lalb_Chr03g0032741 Lupinus albus HOM05D000880 ORTHO05D009684 2.9e-21 107.8 293 53.6
Rhsim04G0217100 Rhododendron simsii HOM05D000880 ORTHO05D009684 5.0e-21 107.1 310 54.2
Sabra18G0001200 Salix brachista HOM05D000880 ORTHO05D009684 8.5e-21 106.3 304 52.3
Lj4A910T18 Lonicera japonica HOM05D000880 ORTHO05D009684 1.4e-20 105.5 307 51.5
Sabra18G0010100 Salix brachista HOM05D000880 ORTHO05D009684 1.4e-20 105.5 304 52.3
Thecc.09G004700 Theobroma cacao HOM05D000880 ORTHO05D009684 7.2e-20 103.2 178 37.1
MELO3C011202.2 Cucumis melo HOM05D000880 ORTHO05D009684 9.4e-20 102.8 300 51.7
Hund04480 Selenicereus undatus HOM05D000880 ORTHO05D009684 3.6e-19 100.9 216 66.7
Potri.018G004400 Populus trichocarpa HOM05D000880 ORTHO05D009684 4.7e-19 100.5 304 51.3
CsaV3_2G031530 Cucumis sativus L. HOM05D000880 ORTHO05D009684 6.1e-19 100.1 240 57.9
Sed0004667 Sechium edule HOM05D000880 ORTHO05D009684 6.7e-18 96.7 297 48.8
vmacro08195 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 1.1e-17 95.9 181 37.6
FAN27G3148 Fragaria x ananassa HOM05D000880 ORTHO05D009684 8.2e-16 89.7 237 59.9
Nitab4.5_0000502g0180 Nicotiana tabacum HOM05D000880 ORTHO05D009684 1.1e-15 89.4 297 50.5
FvH4_2g30660 Fragaria vesca HOM05D000880 ORTHO05D009684 1.8e-15 88.6 237 59.9
Phvul.011G207000 Phaseolus vulgaris HOM05D000880 ORTHO05D009684 9.1e-15 86.3 294 51.0
Medtr1g010020 Medicago truncatula HOM05D000880 ORTHO05D009684 2.0e-14 85.1 238 57.1
Oeu040613.1 Olea europaea HOM05D000880 ORTHO05D009684 2.0e-14 85.1 167 35.3
Ca_12883_v3 Cicer arietinum L. HOM05D000880 ORTHO05D009684 2.6e-14 84.7 224 54.0
Migut.E01433 Erythranthe guttata HOM05D000880 ORTHO05D009684 5.9e-14 83.6 287 51.9
Aqoxy5G01876 Aquilegia oxysepala HOM05D000880 ORTHO05D009684 2.2e-13 81.6 271 55.4
AUR62017906 Chenopodium quinoa HOM05D000880 ORTHO05D009684 6.5e-13 80.1 264 46.2
TPR.G12115 Trifolium pratense HOM05D000880 ORTHO05D009684 6.5e-13 80.1 303 43.9
VMungo1127G1257 Vigna mungo HOM05D000880 ORTHO05D009684 6.5e-13 80.1 299 48.8
Solyc03g120070.4 Solanum lycopersicum HOM05D000880 ORTHO05D009684 1.4e-12 79.0 293 50.9
Lj3g0007027 Lotus japonicus HOM05D000880 ORTHO05D009684 1.9e-12 78.6 317 36.3
HanXRQChr07g0202221 Helianthus annuus HOM05D000880 ORTHO05D009684 2.5e-12 78.2 128 38.3
Psat6g031840 Pisum sativum HOM05D000880 ORTHO05D009684 3.2e-12 77.8 302 46.4
Glyma.13G197400 Glycine max HOM05D000880 ORTHO05D009684 5.5e-12 77.0 211 55.0
EL10Ac6g15284 Beta vulgaris HOM05D000880 ORTHO05D009684 9.4e-12 76.3 226 58.8
Nn8g39798 Nelumbo nucifera HOM05D000880 ORTHO05D009684 9.4e-12 76.3 106 42.5
AUR62003593 Chenopodium quinoa HOM05D000880 ORTHO05D009684 2.1e-11 75.1 263 45.6
Haze_10332 Corylus avellana HOM05D000880 ORTHO05D009684 2.1e-11 75.1 172 71.5
BcaB02g09816 Brassica carinata HOM05D000880 ORTHO05D009684 4.7e-11 73.9 43 88.4
GSVIVG01003996001 Vitis vinifera HOM05D000880 ORTHO05D009684 4.7e-11 73.9 194 66.5
Sc07g0001710 Simmondsia chinensis HOM05D000880 ORTHO05D009684 6.1e-11 73.6 107 36.4
PGSC0003DMG400005692 Solanum tuberosum HOM05D000880 ORTHO05D009684 8.0e-11 73.2 293 50.2
Eucgr.H00073 Eucalyptus grandis HOM05D000880 ORTHO05D009684 1.0e-10 72.8 176 30.1
vmacro08192 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 1.0e-10 72.8 152 32.9
Cc08_g06370 Coffea canephora HOM05D000880 ORTHO05D009684 3.0e-10 71.2 288 49.7
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 3.9e-10 70.9 219 59.4
Peaxi162Scf00288g01016 Petunia axillaris HOM05D000880 ORTHO05D009684 1.5e-09 68.9 225 59.1
Sopen03g038940 Solanum pennellii HOM05D000880 ORTHO05D009684 1.5e-09 68.9 293 49.5
Ah.02g121750 Amaranthus hybridus HOM05D000880 ORTHO05D009684 2.0e-09 68.6 223 59.6
ECA232G0576 Erigeron canadensis HOM05D000880 ORTHO05D009684 4.4e-09 67.4 82 39.0
MD15G1110300 Malus domestica HOM05D000880 ORTHO05D009684 4.4e-09 67.4 167 67.7
Lsat_1_v5_gn_5_33201 Lactuca sativa HOM05D000880 ORTHO05D009684 7.4e-09 66.6 106 35.8
MBI13_g01685_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D001950 3.7e-08 64.3 151 29.8
Nitab4.5_0001956g0020 Nicotiana tabacum HOM05D000880 ORTHO05D009684 6.3e-08 63.5 222 59.9
ECA236G3570 Erigeron canadensis HOM05D000705 ORTHO05D002970 1.1e-07 62.8 82 36.6
Glyma.15G236000 Glycine max HOM05D000880 ORTHO05D009684 2.4e-07 61.6 173 56.1
PSO017G1147 Papaver somniferum HOM05D000880 ORTHO05D001950 5.3e-07 60.5 159 28.3
SGA_v2.0_scaffold121G33022 Striga asiatica HOM05D000880 ORTHO05D009684 7.0e-07 60.1 221 46.6
Cpa.g.sc10.208 Carica papaya HOM05D000880 ORTHO05D009684 5.9e-06 57.0 57 43.9


User provided reference genes

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