Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 1.8e-43 179.1 109 100.0
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 1.2e-39 166.4 104 85.6
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 3.8e-33 144.8 88 98.9
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 6.8e-30 134.0 83 83.1
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 1.3e-25 119.8 77 81.8
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.2e-23 113.2 82 75.6
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 2.1e-23 112.5 77 76.6
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 4.7e-23 111.3 77 75.3
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 6.1e-23 110.9 77 79.2
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 2.0e-21 105.9 77 74.0
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 4.4e-21 104.8 77 71.4
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 7.5e-21 104.0 77 74.0
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 2.2e-20 102.4 77 72.7
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.8e-19 99.4 77 71.4
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 2.4e-19 99.0 78 69.2
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 6.8e-14 80.9 79 74.7
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 3.4e-13 78.6 77 57.1
BcaC03g18002 Brassica carinata HOM05D016815 ORTHO05D020093 4.4e-13 78.2 44 86.4
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 5.8e-13 77.8 81 55.6
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 7.5e-13 77.4 77 53.2
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 9.8e-13 77.0 78 57.7
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 9.8e-13 77.0 77 54.5
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 1.7e-12 76.3 77 57.1
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 2.9e-12 75.5 77 55.8
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 2.9e-12 75.5 77 55.8
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 3.7e-12 75.1 78 56.4
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 3.7e-12 75.1 78 53.8
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 3.7e-12 75.1 79 54.4
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 4.9e-12 74.7 77 51.9
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 4.9e-12 74.7 77 54.5
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 1.1e-11 73.6 80 53.8
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 1.4e-11 73.2 78 52.6
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 1.9e-11 72.8 82 51.2
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.4e-11 72.4 78 55.1
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 2.4e-11 72.4 77 54.5
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 3.2e-11 72.0 79 50.6
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.1e-11 71.6 84 53.6
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 4.1e-11 71.6 84 53.6
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 7.0e-11 70.9 77 50.6
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 7.0e-11 70.9 80 50.0
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.6e-10 69.7 83 51.8
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 2.0e-10 69.3 81 51.9
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 2.7e-10 68.9 78 53.8
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 4.6e-10 68.2 79 51.9
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 4.6e-10 68.2 79 48.1
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 4.6e-10 68.2 79 48.1
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 3.0e-09 65.5 77 50.6
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 3.0e-09 65.5 79 49.4
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 6.6e-09 64.3 83 50.6
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.6e-09 64.3 77 46.8
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.6e-09 64.3 77 46.8
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 6.6e-09 64.3 77 48.1
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 1.1e-08 63.5 77 46.8
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.5e-08 63.2 77 45.5
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.5e-08 63.2 77 45.5
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 1.5e-08 63.2 90 45.6
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 2.5e-08 62.4 76 48.7
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 2.5e-08 62.4 89 46.1
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.3e-08 62.0 79 50.6
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 4.3e-08 61.6 79 46.8
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 4.3e-08 61.6 79 45.6
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 4.3e-08 61.6 84 47.6
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 5.6e-08 61.2 79 46.8
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.6e-08 61.2 77 45.5
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.6e-08 61.2 81 43.2
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 7.3e-08 60.8 79 46.8
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 7.3e-08 60.8 79 49.4
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 7.3e-08 60.8 79 49.4
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 7.3e-08 60.8 79 49.4
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 7.3e-08 60.8 79 44.3
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 9.5e-08 60.5 79 48.1
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 9.5e-08 60.5 85 44.7
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 1.2e-07 60.1 80 50.0
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 1.2e-07 60.1 82 46.3
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 1.6e-07 59.7 79 45.6
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.6e-07 59.7 86 45.3
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 1.6e-07 59.7 77 49.4
Eucgr.C00183 Eucalyptus grandis HOM05D004051 ORTHO05D004480 2.8e-07 58.9 35 80.0
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 3.6e-07 58.5 79 48.1
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 3.6e-07 58.5 85 43.5
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 3.6e-07 58.5 82 45.1
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 3.6e-07 58.5 83 44.6
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 3.6e-07 58.5 79 46.8
Cfa016383 Carpinus fangiana HOM05D021618 ORTHO05D004480 4.7e-07 58.2 35 77.1
Haze_00184 Corylus avellana HOM05D021618 ORTHO05D004480 4.7e-07 58.2 35 77.1
Haze_00874 Corylus avellana HOM05D021618 ORTHO05D004480 4.7e-07 58.2 35 77.1
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 4.7e-07 58.2 77 45.5
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 4.7e-07 58.2 77 45.5
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 6.2e-07 57.8 79 48.1
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 6.2e-07 57.8 77 44.2
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 6.2e-07 57.8 82 48.8
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 8.0e-07 57.4 89 44.9
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 8.0e-07 57.4 85 42.4
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.1e-06 57.0 38 68.4
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.1e-06 57.0 77 44.2
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 1.4e-06 56.6 84 45.2
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 1.8e-06 56.2 77 49.4
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.8e-06 56.2 77 45.5
Zm00001eb383200 Zea mays HOM05D004051 ORTHO05D004480 1.8e-06 56.2 89 41.6
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 2.3e-06 55.8 79 49.4
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 2.3e-06 55.8 79 49.4
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 2.3e-06 55.8 79 44.3
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 2.3e-06 55.8 79 44.3
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 3.1e-06 55.5 77 48.1
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 3.1e-06 55.5 80 46.2
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 3.1e-06 55.5 80 46.2
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 3.1e-06 55.5 87 39.1
CsaV3_5G000560 Cucumis sativus L. HOM05D004051 ORTHO05D004480 3.1e-06 55.5 37 70.3
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 4.0e-06 55.1 77 44.2
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 4.0e-06 55.1 84 44.0
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 4.0e-06 55.1 77 44.2
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 4.0e-06 55.1 81 48.1
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 4.0e-06 55.1 82 41.5
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 4.0e-06 55.1 78 44.9
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 5.2e-06 54.7 79 45.6
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 5.2e-06 54.7 79 45.6
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 5.2e-06 54.7 77 44.2
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 5.2e-06 54.7 83 42.2
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 6.8e-06 54.3 82 45.1
COL.COLO4_03427 Corchorus olitorius HOM05D004051 ORTHO05D004480 6.8e-06 54.3 34 79.4
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 8.9e-06 53.9 82 45.1
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 8.9e-06 53.9 77 42.9


User provided reference genes

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