Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 1.9e-75 285.8 152 100.0
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 1.9e-75 285.8 152 100.0
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 2.5e-75 285.4 152 99.3
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 5.6e-75 284.3 152 99.3
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 7.4e-75 283.9 151 100.0
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 8.1e-74 280.4 151 98.7
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 8.1e-74 280.4 151 98.7
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 5.3e-73 277.7 151 98.0
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 5.3e-73 277.7 151 98.0
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 9.3e-70 266.9 161 90.1
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 6.0e-69 264.2 152 90.8
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 7.9e-69 263.8 152 90.8
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 3.0e-68 261.9 152 90.1
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 3.0e-68 261.9 150 92.0
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 6.7e-68 260.8 152 89.5
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 3.3e-67 258.5 152 89.5
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 3.1e-65 251.9 151 88.1
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 2.7e-61 238.8 149 79.9
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 3.9e-60 235.0 150 79.3
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 3.1e-57 225.3 146 79.5
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 4.1e-57 224.9 140 80.7
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 4.1e-57 224.9 140 80.7
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 4.1e-57 224.9 140 80.7
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 1.2e-56 223.4 141 79.4
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 1.5e-56 223.0 154 74.7
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 1.5e-56 223.0 154 74.7
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.6e-56 222.2 137 78.8
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 2.6e-56 222.2 140 79.3
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 5.9e-56 221.1 144 79.2
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 7.7e-56 220.7 148 76.4
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.0e-55 220.3 137 78.1
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 1.0e-55 220.3 137 80.3
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.3e-55 219.9 137 77.4
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 2.2e-55 219.2 150 73.3
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 2.9e-55 218.8 149 75.2
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 2.9e-55 218.8 138 77.5
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 3.8e-55 218.4 137 80.3
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 5.0e-55 218.0 146 76.0
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 5.0e-55 218.0 141 77.3
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 8.5e-55 217.2 141 77.3
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 1.1e-54 216.9 137 78.1
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 1.1e-54 216.9 141 75.9
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 1.4e-54 216.5 152 73.0
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 1.9e-54 216.1 148 75.0
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 2.5e-54 215.7 145 75.9
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 3.2e-54 215.3 147 72.8
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 5.5e-54 214.5 137 77.4
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 5.5e-54 214.5 139 75.5
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 5.5e-54 214.5 141 76.6
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 5.5e-54 214.5 141 76.6
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 7.2e-54 214.2 138 76.8
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 7.2e-54 214.2 138 76.8
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 9.4e-54 213.8 142 73.9
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 9.4e-54 213.8 149 75.8
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 1.2e-53 213.4 150 75.3
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 1.6e-53 213.0 141 75.2
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 1.6e-53 213.0 140 75.7
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.6e-53 213.0 141 76.6
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 2.7e-53 212.2 146 72.6
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 4.6e-53 211.5 145 73.8
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 2.3e-52 209.1 148 72.3
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.3e-52 209.1 143 74.1
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 2.3e-52 209.1 147 72.8
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 2.3e-52 209.1 137 75.9
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 3.9e-52 208.4 141 73.8
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 5.1e-52 208.0 135 77.8
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 8.8e-52 207.2 135 77.8
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.1e-51 206.8 143 74.1
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.1e-51 206.8 143 74.1
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 1.1e-51 206.8 143 74.1
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-51 206.8 143 72.0
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 1.1e-51 206.8 140 73.6
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 1.5e-51 206.5 144 75.7
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.5e-51 206.5 143 71.3
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 1.5e-51 206.5 140 72.1
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 2.0e-51 206.1 140 72.9
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 2.0e-51 206.1 147 70.1
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 2.0e-51 206.1 150 69.3
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.3e-51 205.3 143 70.6
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 5.7e-51 204.5 117 88.0
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 5.7e-51 204.5 117 88.0
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.4e-51 204.1 143 69.9
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 7.4e-51 204.1 143 69.9
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 9.7e-51 203.8 150 68.7
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 1.3e-50 203.4 140 72.9
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 1.7e-50 203.0 184 61.4
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 1.7e-50 203.0 147 70.7
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.7e-50 203.0 150 72.7
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 1.7e-50 203.0 150 68.0
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.8e-50 202.2 140 71.4
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.8e-50 202.2 143 69.9
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 4.8e-50 201.4 187 60.4
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 6.3e-50 201.1 137 75.9
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 5.3e-49 198.0 140 68.6
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 9.1e-49 197.2 124 82.3
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 1.2e-48 196.8 150 66.7
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 1.2e-48 196.8 147 68.7
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 3.4e-48 195.3 180 59.4
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 4.5e-48 194.9 147 68.0
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 5.9e-48 194.5 147 67.3
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 1.0e-47 193.7 115 83.5
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 1.3e-47 193.4 114 83.3
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 1.3e-47 193.4 140 67.1
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 1.7e-47 193.0 153 66.7
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 2.9e-47 192.2 128 78.1
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 5.0e-47 191.4 154 66.9
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 5.0e-47 191.4 126 74.6
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 5.0e-47 191.4 193 54.9
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 6.5e-47 191.0 120 78.3
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 8.5e-47 190.7 116 81.9
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 8.5e-47 190.7 129 76.7
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 2.5e-46 189.1 118 79.7
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 3.2e-46 188.7 142 69.0
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-45 186.8 143 65.7
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.1e-45 186.0 143 65.0
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 2.7e-45 185.7 128 73.4
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 1.0e-44 183.7 119 77.3
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 1.0e-44 183.7 119 77.3
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.4e-44 183.3 147 66.7
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 2.3e-44 182.6 123 74.8
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 2.3e-44 182.6 117 77.8
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.0e-44 182.2 143 64.3
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 3.0e-44 182.2 119 76.5
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 3.9e-44 181.8 121 74.4
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 1.5e-43 179.9 140 67.9
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 2.6e-43 179.1 119 75.6
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 3.3e-43 178.7 119 75.6
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 5.7e-43 177.9 119 74.8
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 1.3e-42 176.8 223 48.9
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.7e-42 176.4 120 73.3
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 4.8e-42 174.9 151 58.3
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 6.3e-42 174.5 117 75.2
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 6.3e-42 174.5 140 59.3
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 1.7e-39 166.4 151 55.6
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 3.2e-38 162.2 136 59.6
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 1.2e-37 160.2 159 56.6
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 8.0e-37 157.5 135 57.8
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 2.0e-32 142.9 88 80.7
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 2.7e-32 142.5 87 82.8
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 5.0e-31 138.3 80 87.5
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.5e-30 136.0 94 73.4
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 4.7e-29 131.7 96 75.0
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 3.0e-28 129.0 151 43.7
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 7.5e-27 124.4 138 44.9
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 7.5e-27 124.4 82 67.1
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 3.7e-26 122.1 133 51.9
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 1.1e-25 120.6 200 39.0
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 7.0e-25 117.9 70 82.9
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 2.7e-24 115.9 75 78.7
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 2.7e-24 115.9 75 78.7
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-23 113.6 75 77.3
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.6e-21 106.7 64 82.8
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 4.0e-20 102.1 69 75.4
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 2.2e-18 96.3 59 74.6
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.8e-18 95.9 59 74.6
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 7.0e-17 91.3 57 84.2
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 7.0e-17 91.3 57 84.2
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 3.5e-16 89.0 132 34.8
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.3e-15 87.0 59 67.8
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.5e-14 83.6 69 66.7
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 9.5e-14 80.9 69 65.2
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 8.0e-13 77.8 54 74.1
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 3.0e-12 75.9 139 29.5
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 1.3e-10 70.5 47 66.0
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.9e-10 69.3 53 60.4
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 5.9e-08 61.6 47 70.2
FAN03G3288 Fragaria x ananassa HOM05D004221 ORTHO05D205401 3.3e-06 55.8 37 73.0


User provided reference genes

Program Settings