Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 6.4e-127 457.6 261 100.0
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 2.5e-123 445.7 261 97.7
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 1.7e-103 379.8 264 87.1
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 2.5e-99 365.9 265 86.0
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 1.2e-93 347.1 260 84.2
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 1.2e-93 347.1 260 84.2
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.0e-87 327.4 297 73.4
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 1.5e-83 313.5 291 71.1
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 3.3e-83 312.4 285 73.3
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 3.3e-83 312.4 291 70.8
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 7.9e-77 291.2 299 66.9
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.8e-73 280.0 287 69.0
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 1.3e-71 273.9 296 64.9
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 6.1e-69 265.0 286 64.7
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 1.0e-68 264.2 285 64.2
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 2.7e-53 213.0 317 50.8
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 5.7e-51 205.3 320 50.6
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 2.8e-50 203.0 293 53.9
A07p03430 Brassica napus HOM05D004420 ORTHO05D005048 8.3e-50 201.4 212 65.6
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 6.5e-47 191.8 289 58.8
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 7.2e-46 188.3 286 54.2
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.2e-45 187.6 277 50.5
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.5e-43 180.6 287 52.3
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 2.0e-43 180.3 270 57.4
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 2.6e-43 179.9 283 53.7
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.8e-42 176.4 293 48.8
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 8.3e-42 174.9 283 53.4
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 6.1e-37 158.7 261 52.1
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 1.4e-36 157.5 325 42.8
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 4.9e-34 149.1 258 51.6
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 2.4e-33 146.7 258 49.6
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 7.0e-33 145.2 326 39.9
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 7.0e-33 145.2 316 41.8
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 2.7e-32 143.3 313 41.2
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 6.6e-31 138.7 301 39.5
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 1.9e-30 137.1 300 41.0
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 1.9e-30 137.1 318 39.9
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 2.5e-30 136.7 266 49.6
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 3.3e-30 136.3 317 39.7
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 4.3e-30 136.0 266 49.2
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 5.6e-30 135.6 324 38.3
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 7.3e-30 135.2 283 39.6
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 4.7e-29 132.5 252 50.8
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 6.2e-29 132.1 304 41.1
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 1.8e-28 130.6 244 48.8
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 1.8e-28 130.6 244 48.8
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 1.8e-28 130.6 309 41.1
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 2.3e-28 130.2 283 39.6
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 4.0e-28 129.4 325 37.2
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 8.9e-28 128.3 342 38.9
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 1.2e-27 127.9 254 48.4
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 1.5e-27 127.5 313 38.7
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.0e-27 127.1 303 36.6
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 3.4e-27 126.3 330 37.6
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 7.5e-27 125.2 308 38.6
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 1.3e-26 124.4 311 39.2
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.7e-26 124.0 306 39.9
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 4.9e-26 122.5 298 37.6
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 6.4e-26 122.1 306 39.5
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 1.1e-25 121.3 287 38.0
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 1.1e-25 121.3 287 38.0
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 1.1e-25 121.3 270 38.1
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 1.1e-25 121.3 304 36.8
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.4e-25 120.9 306 37.6
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 1.9e-25 120.6 291 37.5
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 4.1e-25 119.4 304 36.2
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 4.1e-25 119.4 304 37.2
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 7.0e-25 118.6 313 36.7
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 7.0e-25 118.6 313 36.7
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 9.2e-25 118.2 254 46.5
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.2e-24 117.9 134 67.9
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.0e-24 117.1 300 37.3
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.0e-24 117.1 300 37.3
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 2.0e-24 117.1 299 40.5
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.7e-24 116.7 303 34.7
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 2.7e-24 116.7 324 36.1
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 7.8e-24 115.2 301 35.5
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.0e-23 114.8 298 36.9
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 1.3e-23 114.4 309 36.2
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 2.3e-23 113.6 290 36.6
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 3.0e-23 113.2 302 37.1
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 3.9e-23 112.8 288 34.7
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 5.0e-23 112.5 310 37.1
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 5.0e-23 112.5 310 37.1
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 5.0e-23 112.5 310 36.1
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 8.6e-23 111.7 299 36.5
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.1e-22 111.3 310 35.8
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 1.1e-22 111.3 328 35.4
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.9e-22 110.5 310 38.4
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 3.3e-22 109.8 312 36.2
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 4.3e-22 109.4 302 35.4
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 7.3e-22 108.6 298 35.9
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 9.5e-22 108.2 270 35.2
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 1.2e-21 107.8 321 34.0
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 1.2e-21 107.8 310 35.8
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 1.6e-21 107.5 326 37.1
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 1.6e-21 107.5 302 35.4
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 2.1e-21 107.1 286 34.3
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.8e-21 106.7 303 32.3
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 6.2e-21 105.5 314 36.9
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 8.1e-21 105.1 316 36.7
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 8.1e-21 105.1 320 34.7
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 1.4e-20 104.4 291 35.7
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.8e-20 104.0 304 34.9
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 1.8e-20 104.0 303 34.7
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 1.8e-20 104.0 288 35.4
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 5.2e-20 102.4 311 35.0
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 8.9e-20 101.7 288 35.1
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.5e-19 100.9 313 32.9
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 2.6e-19 100.1 309 33.7
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 2.6e-19 100.1 289 34.3
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 3.4e-19 99.8 295 38.3
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 7.5e-19 98.6 306 33.0
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.7e-18 97.4 318 36.2
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 1.7e-18 97.4 251 36.7
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 2.2e-18 97.1 320 34.4
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 2.2e-18 97.1 310 34.5
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 3.7e-18 96.3 183 41.5
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 4.9e-18 95.9 312 33.0
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 4.9e-18 95.9 290 34.5
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 6.4e-18 95.5 333 32.1
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 8.3e-18 95.1 312 31.4
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 8.3e-18 95.1 314 33.1
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 1.9e-17 94.0 301 34.6
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 2.4e-17 93.6 308 32.8
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 3.2e-17 93.2 265 33.6
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 5.4e-17 92.4 308 33.1
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 7.1e-17 92.0 222 38.3
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 7.1e-17 92.0 293 33.4
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 7.8e-16 88.6 287 36.6
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 7.8e-16 88.6 304 32.9
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 1.0e-15 88.2 302 30.8
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 1.0e-15 88.2 291 32.3
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 1.7e-15 87.4 311 32.8
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 3.9e-15 86.3 305 32.1
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 6.6e-15 85.5 258 33.3
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 8.6e-15 85.1 289 32.9
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 8.6e-15 85.1 311 30.9
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 1.1e-14 84.7 262 34.7
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 2.5e-14 83.6 302 33.4
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 2.5e-14 83.6 267 32.2
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 3.3e-14 83.2 262 34.4
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 3.3e-14 83.2 302 31.1
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 7.3e-14 82.0 298 32.6
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 1.4e-12 77.8 255 32.9
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 4.0e-12 76.3 209 34.0
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 4.0e-12 76.3 285 30.2
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 4.0e-12 76.3 285 30.2
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 5.2e-12 75.9 286 31.1
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 6.8e-12 75.5 298 32.2
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 6.8e-12 75.5 299 30.1
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 8.9e-12 75.1 302 31.1
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 8.9e-12 75.1 314 29.6
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 4.4e-11 72.8 295 32.2
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 5.8e-11 72.4 238 31.5
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 7.6e-11 72.0 182 33.5
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.8e-10 69.7 302 28.5
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 8.4e-10 68.6 235 31.1
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 3.2e-09 66.6 77 49.4
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 6.6e-07 58.9 147 37.4
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 1.9e-06 57.4 285 29.8
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 2.5e-06 57.0 148 36.5


User provided reference genes

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