Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 8.3e-70 266.9 136 100.0
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 8.9e-64 246.9 130 95.4
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 1.2e-63 246.5 130 95.4
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 1.7e-62 242.7 130 95.4
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 7.3e-58 227.3 130 88.5
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 6.9e-56 220.7 131 87.0
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 1.2e-55 219.9 130 86.2
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 2.0e-55 219.2 140 82.1
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 3.4e-55 218.4 130 86.9
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 5.8e-55 217.6 130 84.6
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 5.8e-55 217.6 130 84.6
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 5.8e-55 217.6 131 87.0
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 1.3e-54 216.5 130 83.1
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 2.9e-54 215.3 130 83.1
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 2.9e-54 215.3 130 83.1
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 1.9e-53 212.6 130 84.6
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 1.6e-52 209.5 140 80.7
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 1.0e-51 206.8 130 80.8
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 2.5e-50 202.2 130 76.9
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 3.3e-50 201.8 116 88.8
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 3.3e-50 201.8 130 80.8
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 2.1e-49 199.1 130 77.7
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 7.6e-47 190.7 113 85.8
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 9.9e-47 190.3 130 77.7
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 1.3e-41 173.3 131 67.9
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 4.0e-40 168.3 132 66.7
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 3.2e-37 158.7 137 59.9
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 5.5e-37 157.9 131 63.4
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 7.1e-37 157.5 137 61.3
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 1.2e-36 156.8 143 59.4
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 7.9e-36 154.1 142 59.9
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 1.0e-35 153.7 135 60.7
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 1.8e-35 152.9 131 60.3
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 3.9e-35 151.8 136 58.1
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 5.1e-35 151.4 136 58.1
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 6.7e-35 151.0 136 61.0
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 1.1e-34 150.2 131 60.3
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 1.9e-34 149.4 131 59.5
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 1.9e-34 149.4 132 60.6
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 2.5e-34 149.1 138 57.2
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 7.4e-34 147.5 136 58.8
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 1.3e-33 146.7 115 65.2
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 8.2e-33 144.1 120 61.7
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 1.8e-32 142.9 133 60.2
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 5.3e-32 141.4 134 59.0
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 9.0e-32 140.6 130 56.2
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 2.6e-31 139.0 133 58.6
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 3.4e-31 138.7 136 58.1
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 5.8e-31 137.9 142 54.2
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 1.0e-30 137.1 142 53.5
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 1.0e-30 137.1 130 54.6
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 1.3e-30 136.7 120 61.7
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 1.3e-30 136.7 133 58.6
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 2.2e-30 136.0 121 62.0
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 3.8e-30 135.2 130 54.6
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 3.8e-30 135.2 140 54.3
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 3.8e-30 135.2 136 55.9
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 1.1e-29 133.7 143 55.9
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 2.5e-29 132.5 142 52.8
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 2.5e-29 132.5 141 54.6
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 5.5e-29 131.3 135 56.3
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 9.3e-29 130.6 119 61.3
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 1.2e-28 130.2 114 57.9
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 1.6e-28 129.8 130 56.2
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 4.6e-28 128.3 119 61.3
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 6.0e-28 127.9 132 55.3
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.0e-27 127.1 136 56.6
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 1.0e-27 127.1 132 57.6
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 1.3e-27 126.7 127 57.5
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 2.3e-27 125.9 116 61.2
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 3.9e-27 125.2 141 54.6
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 1.1e-26 123.6 132 54.5
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 1.1e-26 123.6 140 51.4
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 1.5e-26 123.2 118 58.5
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 1.5e-26 123.2 141 51.1
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 1.9e-26 122.9 135 53.3
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 2.5e-26 122.5 137 53.3
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 4.3e-26 121.7 140 52.9
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 4.3e-26 121.7 114 55.3
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 7.4e-26 120.9 130 49.2
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 7.4e-26 120.9 131 54.2
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 7.4e-26 120.9 128 52.3
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 1.3e-25 120.2 179 43.0
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 2.2e-25 119.4 130 53.1
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 3.7e-25 118.6 159 48.4
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 4.8e-25 118.2 179 43.0
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 8.2e-25 117.5 135 49.6
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 1.8e-24 116.3 116 56.9
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 4.1e-24 115.2 141 48.2
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 5.3e-24 114.8 153 45.1
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 9.0e-24 114.0 135 48.9
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 9.0e-24 114.0 126 52.4
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 9.0e-24 114.0 118 55.9
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 9.0e-24 114.0 134 52.2
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 1.5e-23 113.2 133 50.4
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 2.0e-23 112.8 126 54.8
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 3.4e-23 112.1 164 47.0
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 5.9e-23 111.3 132 49.2
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 5.9e-23 111.3 113 54.0
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 5.9e-23 111.3 156 46.8
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 7.6e-23 110.9 145 48.3
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 7.6e-23 110.9 149 49.7
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.3e-22 110.2 164 46.3
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.3e-22 110.2 164 46.3
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 1.7e-22 109.8 137 48.9
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 3.8e-22 108.6 124 50.8
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 5.0e-22 108.2 119 53.8
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 8.5e-22 107.5 134 48.5
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 8.5e-22 107.5 125 49.6
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 8.5e-22 107.5 124 48.4
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 8.5e-22 107.5 133 47.4
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 1.9e-21 106.3 140 46.4
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 3.2e-21 105.5 130 50.8
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 4.2e-21 105.1 154 42.9
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 7.2e-21 104.4 122 49.2
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 7.2e-21 104.4 120 50.8
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 9.4e-21 104.0 121 47.1
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 9.4e-21 104.0 147 44.9
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 9.4e-21 104.0 126 46.0
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 2.1e-20 102.8 133 47.4
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 4.6e-20 101.7 132 47.7
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 7.9e-20 100.9 140 43.6
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 7.9e-20 100.9 118 50.8
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 1.0e-19 100.5 126 44.4
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 1.0e-19 100.5 126 46.0
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 3.0e-19 99.0 133 45.9
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 3.9e-19 98.6 146 43.2
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 5.1e-19 98.2 124 47.6
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 5.1e-19 98.2 131 42.7
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 5.1e-19 98.2 121 49.6
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 1.1e-18 97.1 123 48.0
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 1.5e-18 96.7 112 50.0
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 1.5e-18 96.7 143 42.0
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 1.9e-18 96.3 134 46.3
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 1.9e-18 96.3 160 43.1
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 4.3e-18 95.1 129 43.4
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 5.7e-18 94.7 129 45.7
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 1.5e-15 86.7 111 43.2
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 1.5e-15 86.7 140 40.0
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 2.2e-14 82.8 173 33.5
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 3.8e-14 82.0 93 50.5
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 5.0e-14 81.6 150 39.3
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 1.4e-13 80.1 104 51.9
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 1.9e-13 79.7 117 37.6
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 3.2e-13 79.0 156 35.9
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 1.4e-11 73.6 88 45.5
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 3.9e-11 72.0 65 52.3
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 2.2e-09 66.2 92 40.2
Peaxi162Scf00200g00182 Petunia axillaris HOM05D004757 ORTHO05D005743 4.1e-08 62.0 101 42.6
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 2.2e-06 56.2 93 40.9


User provided reference genes

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