Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 0.0e+00 1218.0 646 100.0
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 0.0e+00 1181.0 646 97.8
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 0.0e+00 1125.5 654 90.4
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 0.0e+00 1112.4 653 92.6
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 6.1e-304 1047.0 661 83.4
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 3.4e-294 1014.6 662 81.4
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 2.9e-290 1001.5 646 81.9
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 5.2e-287 990.7 652 80.8
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 4.1e-284 981.1 651 80.2
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 8.6e-282 973.4 654 79.5
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 1.3e-258 896.3 657 73.8
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 2.8e-232 808.9 645 66.2
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 1.1e-220 770.4 637 63.3
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 5.1e-218 761.5 655 64.0
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 2.8e-216 755.7 644 62.7
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 2.4e-215 752.7 658 61.2
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 2.4e-215 752.7 658 61.1
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 5.3e-215 751.5 655 62.0
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 2.0e-214 749.6 649 61.6
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 5.9e-214 748.0 647 63.2
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 3.8e-213 745.3 654 61.5
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 5.0e-213 745.0 644 61.2
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 8.5e-213 744.2 662 61.3
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 1.1e-212 743.8 638 62.4
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 3.6e-211 738.8 646 61.6
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 1.4e-210 736.9 651 59.9
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 5.1e-210 734.9 656 59.6
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 8.8e-210 734.2 648 61.4
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.0e-209 733.0 656 60.5
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 3.3e-209 732.3 656 59.6
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 5.7e-209 731.5 637 59.7
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 7.4e-209 731.1 664 58.7
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 1.8e-207 726.5 656 61.0
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 9.1e-207 724.2 648 60.5
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 1.2e-206 723.8 632 61.9
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 3.4e-206 722.2 650 60.9
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 5.9e-206 721.5 653 59.7
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.3e-205 720.3 647 60.4
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 1.7e-205 719.9 648 61.0
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 4.2e-204 715.3 668 58.4
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 7.2e-204 714.5 658 59.7
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 4.7e-203 711.8 662 58.3
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 7.9e-203 711.1 668 57.6
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 7.9e-203 711.1 655 58.5
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 5.1e-202 708.4 657 57.7
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 5.1e-202 708.4 652 58.4
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 2.6e-201 706.1 654 58.1
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 3.3e-201 705.7 663 58.4
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 3.3e-201 705.7 665 57.9
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 9.7e-201 704.1 653 59.9
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 1.3e-200 703.7 645 59.2
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 2.2e-200 703.0 635 59.8
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 2.2e-200 703.0 649 58.1
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 2.8e-200 702.6 647 58.1
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 8.2e-200 701.0 661 57.8
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 5.3e-199 698.4 670 56.4
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 3.5e-198 695.7 638 60.0
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 4.5e-198 695.3 662 59.5
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 7.7e-198 694.5 635 59.5
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 1.7e-197 693.3 647 58.0
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 8.5e-197 691.0 657 58.8
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 1.1e-196 690.6 660 57.7
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 1.1e-196 690.6 660 57.7
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 1.5e-196 690.3 653 57.7
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 1.9e-196 689.9 647 59.5
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 4.2e-196 688.7 653 59.1
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 4.2e-196 688.7 657 59.2
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 5.5e-196 688.3 620 60.3
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 5.5e-196 688.3 665 59.1
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 1.2e-195 687.2 651 57.1
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 6.7e-194 681.4 653 56.5
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 8.8e-194 681.0 642 56.9
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 9.1e-191 671.0 669 54.1
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 2.2e-189 666.4 649 58.4
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 2.9e-189 666.0 646 55.7
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 1.1e-188 664.1 660 56.4
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 1.9e-188 663.3 700 55.3
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 1.4e-183 647.1 615 58.5
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 4.5e-182 642.1 686 52.2
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 1.3e-181 640.6 495 66.5
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 5.0e-181 638.6 650 52.0
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 4.0e-178 629.0 658 53.2
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 4.9e-176 622.1 537 61.1
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 2.8e-171 606.3 593 55.5
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 3.2e-167 592.8 493 62.9
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 5.4e-167 592.0 566 58.1
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 2.5e-164 583.2 682 49.4
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 8.0e-163 578.2 659 49.9
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 1.2e-161 574.3 528 58.7
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 2.6e-161 573.2 658 48.6
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 3.4e-161 572.8 654 52.1
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 1.7e-160 570.5 696 48.3
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 4.9e-160 568.9 503 58.6
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.4e-159 567.4 488 64.8
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 1.2e-150 537.7 535 57.6
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 2.9e-136 490.0 602 47.7
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 6.4e-136 488.8 546 50.0
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 7.1e-127 458.8 644 42.5
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 1.1e-122 444.9 439 56.7
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 4.8e-115 419.5 746 38.1
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 6.2e-115 419.1 527 48.8
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 1.6e-110 404.4 660 39.2
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 1.9e-100 370.9 280 66.1
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 4.3e-92 343.2 580 37.9
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 9.1e-90 335.5 180 95.6
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 1.3e-88 331.6 652 34.4
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.3e-85 320.9 380 51.3
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 8.8e-85 318.9 333 53.2
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.5e-79 301.6 335 51.9
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 3.0e-77 293.9 290 56.6
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 4.1e-74 283.5 287 55.1
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 1.0e-72 278.9 511 37.4
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.0e-69 268.9 424 46.9
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 3.1e-66 257.3 178 89.3
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 9.1e-66 255.8 330 46.1
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 2.0e-60 238.0 288 50.0
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 3.7e-59 233.8 206 64.1
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 1.2e-57 228.8 122 87.7
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 7.3e-55 219.5 386 39.1
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.8e-53 214.9 157 72.0
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 6.8e-53 213.0 150 70.0
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 3.1e-45 187.6 190 53.7
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 2.1e-38 164.9 367 37.6
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 7.5e-36 156.4 319 33.5
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 1.0e-32 146.0 712 27.4
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 1.0e-24 119.4 125 58.4
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 7.6e-20 103.2 125 52.8
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 7.8e-17 93.2 128 45.3
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.7e-16 92.0 55 83.6
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.6e-14 85.5 94 48.9
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 3.1e-13 81.3 162 39.5
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 7.6e-12 76.6 63 57.1
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 8.4e-11 73.2 98 44.9
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 1.9e-10 72.0 63 54.0
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 2.4e-10 71.6 46 67.4
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 3.2e-10 71.2 44 70.5
A02p43970 Brassica napus HOM05D005709 ORTHO05D006306 5.1e-08 63.9 64 62.5


User provided reference genes

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