Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 1.7e-44 182.2 86 100.0
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 1.6e-42 175.6 86 97.7
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 1.6e-42 175.6 86 97.7
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 1.6e-42 175.6 86 97.7
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 1.6e-42 175.6 86 97.7
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 2.2e-39 165.2 86 89.5
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 2.0e-29 132.1 96 69.8
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 7.7e-29 130.2 72 84.7
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 3.8e-28 127.9 96 72.9
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 3.8e-28 127.9 72 83.3
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 6.1e-26 120.6 66 81.8
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 8.0e-26 120.2 91 68.1
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 8.0e-26 120.2 91 68.1
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 8.0e-26 120.2 91 68.1
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 2.3e-25 118.6 91 67.0
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 4.0e-25 117.9 93 66.7
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 4.4e-16 87.8 95 54.7
Aa31LG1G17280 Aethionema arabicum HOM05D004540 ORTHO05D004852 2.2e-15 85.5 65 67.7
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 5.4e-14 80.9 104 50.0
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 1.2e-13 79.7 76 56.6
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 1.6e-13 79.3 97 48.5
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 1.6e-13 79.3 97 48.5
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 4.5e-13 77.8 69 60.9
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 5.9e-13 77.4 85 55.3
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 5.9e-13 77.4 90 50.0
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 2.3e-12 75.5 68 51.5
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 3.8e-12 74.7 77 54.5
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.1e-11 73.2 67 55.2
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.1e-11 73.2 67 53.7
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.1e-11 73.2 67 53.7
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.1e-11 73.2 67 53.7
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 2.5e-11 72.0 67 50.7
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 4.2e-11 71.2 67 53.7
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 5.5e-11 70.9 69 52.2
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 5.5e-11 70.9 69 52.2
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 5.5e-11 70.9 69 52.2
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 7.2e-11 70.5 67 53.7
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 9.5e-11 70.1 69 50.7
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 8.0e-10 67.0 67 52.2
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 8.0e-10 67.0 71 49.3
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 8.0e-10 67.0 71 49.3
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 1.0e-09 66.6 78 46.2
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 1.8e-09 65.9 79 46.8
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 4.0e-09 64.7 72 47.2
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 4.0e-09 64.7 67 44.8
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 5.2e-09 64.3 70 50.0
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 6.8e-09 63.9 80 40.0
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 6.8e-09 63.9 77 51.9
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 6.8e-09 63.9 71 49.3
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 8.9e-09 63.5 72 52.8
BcaC03g13276 Brassica carinata HOM05D004540 ORTHO05D004852 8.9e-09 63.5 71 54.9
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 8.9e-09 63.5 82 45.1
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 8.9e-09 63.5 82 45.1
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 8.9e-09 63.5 82 45.1
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 8.9e-09 63.5 68 48.5
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 1.2e-08 63.2 69 50.7
C02p04070 Brassica napus HOM05D004540 ORTHO05D004852 1.2e-08 63.2 72 55.6
BolC2t06369H Brassica oleracea HOM05D004540 ORTHO05D004852 1.2e-08 63.2 72 55.6
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.2e-08 63.2 77 45.5
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.5e-08 62.8 88 44.3
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 1.5e-08 62.8 89 42.7
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.5e-08 62.8 89 42.7
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.5e-08 62.8 89 42.7
CARHR203600 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.0e-08 62.4 38 81.6
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 2.6e-08 62.0 70 48.6
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 2.6e-08 62.0 70 48.6
Sp6g33605 Schrenkiella parvula HOM05D004540 ORTHO05D004852 2.6e-08 62.0 39 79.5
BcaB08g37180 Brassica carinata HOM05D004540 ORTHO05D004852 4.4e-08 61.2 32 84.4
A03p04260 Brassica napus HOM05D004540 ORTHO05D004852 4.4e-08 61.2 47 68.1
C09p67710 Brassica napus HOM05D004540 ORTHO05D004852 4.4e-08 61.2 32 84.4
BolC3t13005H Brassica oleracea HOM05D004540 ORTHO05D004852 4.4e-08 61.2 47 68.1
BolC9t59533H Brassica oleracea HOM05D004540 ORTHO05D004852 4.4e-08 61.2 32 84.4
BraA03t09770Z Brassica rapa HOM05D004540 ORTHO05D004852 4.4e-08 61.2 47 68.1
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 4.4e-08 61.2 89 41.6
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 4.4e-08 61.2 75 46.7
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 4.4e-08 61.2 60 56.7
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 7.5e-08 60.5 70 51.4
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 7.5e-08 60.5 70 51.4
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 7.5e-08 60.5 86 44.2
Aa31LG3G17310 Aethionema arabicum HOM05D004540 ORTHO05D004852 9.8e-08 60.1 37 81.1
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 9.8e-08 60.1 86 40.7
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 9.8e-08 60.1 72 51.4
BraA02t05000Z Brassica rapa HOM05D004540 ORTHO05D004852 9.8e-08 60.1 72 51.4
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 9.8e-08 60.1 72 51.4
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 2.2e-07 58.9 60 46.7
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 2.2e-07 58.9 66 43.9
A02p00160 Brassica napus HOM05D004540 ORTHO05D004852 2.8e-07 58.5 72 51.4
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.8e-07 58.5 59 49.2
BcaB01g05659 Brassica carinata HOM05D004540 ORTHO05D004852 3.7e-07 58.2 47 66.0
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 3.7e-07 58.2 86 40.7
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 3.7e-07 58.2 75 45.3
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 3.7e-07 58.2 28 82.1
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 3.7e-07 58.2 28 82.1
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 3.7e-07 58.2 65 47.7
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 3.7e-07 58.2 73 47.9
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 3.7e-07 58.2 66 47.0
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 4.9e-07 57.8 68 41.2
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 6.3e-07 57.4 68 48.5
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 6.3e-07 57.4 68 48.5
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 6.3e-07 57.4 66 47.0
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 6.3e-07 57.4 74 41.9
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 6.3e-07 57.4 71 40.8
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.1e-06 56.6 65 47.7
BraA10t44817Z Brassica rapa HOM05D004540 ORTHO05D004852 1.4e-06 56.2 28 89.3
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 1.4e-06 56.2 71 43.7
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 1.4e-06 56.2 67 40.3
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 2.4e-06 55.5 76 39.5
Gohir.A05G242250 Gossypium hirsutum HOM05D037961 ORTHO05D004852 2.4e-06 55.5 79 35.4
Gorai.009G252900 Gossypium raimondii HOM05D037961 ORTHO05D004852 2.4e-06 55.5 79 35.4
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 3.1e-06 55.1 72 44.4
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 4.1e-06 54.7 82 41.5
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 4.1e-06 54.7 82 41.5
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 4.1e-06 54.7 86 39.5
Gohir.D05G243600 Gossypium hirsutum HOM05D037961 ORTHO05D004852 4.1e-06 54.7 79 35.4
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 4.1e-06 54.7 87 37.9
Carub.0006s0822 Capsella rubella HOM05D004540 ORTHO05D004852 5.4e-06 54.3 30 80.0
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 5.4e-06 54.3 67 44.8
Migut.H01103 Erythranthe guttata HOM05D004540 ORTHO05D004852 7.0e-06 53.9 62 41.9
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 7.0e-06 53.9 76 42.1


User provided reference genes

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