Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p29860 Brassica napus HOM05D006995 ORTHO05D008870 4.2e-42 174.5 102 100.0
BraA06t25934Z Brassica rapa HOM05D006995 ORTHO05D008870 1.2e-41 172.9 102 99.0
BolC3t18607H Brassica oleracea HOM05D006995 ORTHO05D008870 3.0e-40 168.3 102 97.1
BcaB02g09725 Brassica carinata HOM05D006995 ORTHO05D008870 1.7e-38 162.5 102 93.1
BraA09t36465Z Brassica rapa HOM05D006995 ORTHO05D008870 2.2e-38 162.2 100 95.0
Sp2g26260 Schrenkiella parvula HOM05D006995 ORTHO05D008870 2.2e-38 162.2 102 83.3
BcaC01g02557 Brassica carinata HOM05D006995 ORTHO05D008870 7.0e-37 157.1 102 92.2
C03p63500 Brassica napus HOM05D006995 ORTHO05D008870 7.0e-37 157.1 102 92.2
A09p08140 Brassica napus HOM05D006995 ORTHO05D008870 3.5e-36 154.8 102 91.2
Aa31LG1G18840 Aethionema arabicum HOM05D006995 ORTHO05D008870 2.2e-35 152.1 102 77.5
AL8G40200 Arabidopsis lyrata HOM05D006995 ORTHO05D008870 8.5e-35 150.2 102 83.3
CARHR276970 Cardamine hirsuta HOM05D006995 ORTHO05D008870 3.6e-33 144.8 102 78.4
AT5G63135 Arabidopsis thaliana HOM05D006995 ORTHO05D008870 1.4e-32 142.9 102 81.4
BcaC04g23358 Brassica carinata HOM05D006995 ORTHO05D008870 6.8e-32 140.6 94 87.2
C09p09200 Brassica napus HOM05D006995 ORTHO05D008870 6.8e-32 140.6 94 87.2
BolC9t53833H Brassica oleracea HOM05D006995 ORTHO05D008870 6.8e-32 140.6 94 87.2
Carub.0008s2389 Capsella rubella HOM05D006995 ORTHO05D008870 2.6e-31 138.7 102 78.4
Thhalv10023776m.g Eutrema salsugineum HOM05D006995 ORTHO05D008870 3.7e-30 134.8 111 67.6
THA.LOC104798964 Tarenaya hassleriana HOM05D006995 ORTHO05D008870 8.3e-30 133.7 102 73.5
Peaxi162Scf00089g01427 Petunia axillaris HOM05D006995 ORTHO05D008870 3.6e-25 118.2 102 59.8
Prupe.5G166100 Prunus persica HOM05D006995 ORTHO05D008870 4.7e-25 117.9 102 64.7
MD14G1172000 Malus domestica HOM05D006995 ORTHO05D008870 5.2e-24 114.4 102 65.7
Cc04_g11640 Coffea canephora HOM05D006995 ORTHO05D008870 6.8e-24 114.0 102 62.7
Oeu008873.1 Olea europaea HOM05D006995 ORTHO05D008870 8.9e-24 113.6 102 62.7
unitig_26.g8807 Utricularia gibba HOM05D006995 ORTHO05D008870 8.9e-24 113.6 102 61.8
Dinv20602 Davidia involucrata HOM05D006995 ORTHO05D008870 2.0e-23 112.5 102 57.8
Manes.14G061000 Manihot esculenta HOM05D006995 ORTHO05D008870 2.6e-23 112.1 102 64.7
Potri.012G085100 Populus trichocarpa HOM05D006995 ORTHO05D008870 3.4e-23 111.7 102 62.7
CSS0043708 Camellia sinensis var. sinensis HOM05D006995 ORTHO05D008870 4.4e-23 111.3 102 56.9
MSTRG.23164 Avicennia marina HOM05D006995 ORTHO05D008870 5.7e-23 110.9 102 62.7
MSTRG.11491 Avicennia marina HOM05D006995 ORTHO05D008870 1.3e-22 109.8 102 61.8
Psat5g116320 Pisum sativum HOM05D006995 ORTHO05D008870 2.2e-22 109.0 102 60.8
RcHm_v2.0_Chr7g0192611 Rosa chinensis HOM05D006995 ORTHO05D008870 2.8e-22 108.6 102 61.8
FAN08G0020 Fragaria x ananassa HOM05D006995 ORTHO05D008870 3.7e-22 108.2 102 61.8
FvH4_5g06250 Fragaria vesca HOM05D006995 ORTHO05D008870 6.3e-22 107.5 102 61.8
Lj9C443G5 Lonicera japonica HOM05D006995 ORTHO05D008870 8.3e-22 107.1 102 58.8
FAN18G0637 Fragaria x ananassa HOM05D006995 ORTHO05D008870 1.1e-21 106.7 102 60.8
Hma1.2p1_0046F.1_g027080 Hydrangea macrophylla HOM05D006995 ORTHO05D008870 1.1e-21 106.7 102 60.8
TAR629G0625 Trochodendron aralioides HOM05D006995 ORTHO05D008870 1.1e-21 106.7 102 60.8
Phvul.009G174500 Phaseolus vulgaris HOM05D006995 ORTHO05D008870 1.4e-21 106.3 102 63.7
TWI39G0505 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 3.1e-21 105.1 102 66.7
Ca_16134_v3 Cicer arietinum L. HOM05D006995 ORTHO05D008870 4.1e-21 104.8 102 62.7
Migut.O00152 Erythranthe guttata HOM05D006995 ORTHO05D008870 4.1e-21 104.8 95 57.9
Glyma.04G187800 Glycine max HOM05D006995 ORTHO05D008870 5.4e-21 104.4 102 60.8
TWI23G0026 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 1.6e-20 102.8 102 59.8
SalBow5G1368 Salvia bowleyana HOM05D006995 ORTHO05D008870 3.5e-20 101.7 102 57.8
SalBow5G3606 Salvia bowleyana HOM05D006995 ORTHO05D008870 3.5e-20 101.7 102 57.8
ClCG01G013460 Citrullus lanatus HOM05D006995 ORTHO05D008870 4.5e-20 101.3 73 65.8
MELO3C002295.2 Cucumis melo HOM05D006995 ORTHO05D008870 4.5e-20 101.3 73 65.8
Lj1g0014247 Lotus japonicus HOM05D006995 ORTHO05D008870 7.8e-20 100.5 102 57.8
Actinidia24594 Actinidia chinensis HOM05D006995 ORTHO05D008870 1.0e-19 100.1 102 54.9
CsaV3_1G008810 Cucumis sativus L. HOM05D006995 ORTHO05D008870 1.0e-19 100.1 73 65.8
Glyma.06G177900 Glycine max HOM05D006995 ORTHO05D008870 1.0e-19 100.1 102 58.8
VMungo1309G2685 Vigna mungo HOM05D006995 ORTHO05D008870 1.0e-19 100.1 94 61.7
Nn4g22611 Nelumbo nucifera HOM05D006995 ORTHO05D008870 2.3e-19 99.0 102 56.9
Nitab4.5_0001793g0100 Nicotiana tabacum HOM05D006995 ORTHO05D008870 2.3e-19 99.0 102 60.8
Nitab4.5_0003703g0070 Nicotiana tabacum HOM05D006995 ORTHO05D008870 2.3e-19 99.0 102 60.8
arahy.Tifrunner.gnm1.ann1.W5ECLN Arachis hypogaea HOM05D006995 ORTHO05D008870 5.0e-19 97.8 102 55.9
arahy.Tifrunner.gnm1.ann1.X0DT51 Arachis hypogaea HOM05D006995 ORTHO05D008870 5.0e-19 97.8 102 55.9
Lalb_Chr08g0236711 Lupinus albus HOM05D006995 ORTHO05D008870 5.0e-19 97.8 73 63.0
Sed0018383 Sechium edule HOM05D006995 ORTHO05D008870 1.9e-18 95.9 73 63.0
Atru.chr9.2568 Acer truncatum HOM05D006995 ORTHO05D008870 4.3e-18 94.7 69 66.7
Eucgr.K02801 Eucalyptus grandis HOM05D006995 ORTHO05D008870 4.3e-18 94.7 68 63.2
Solyc03g112290.2 Solanum lycopersicum HOM05D006995 ORTHO05D008870 7.3e-18 94.0 102 57.8
Sopen03g031390 Solanum pennellii HOM05D006995 ORTHO05D008870 7.3e-18 94.0 102 57.8
Lsat_1_v5_gn_5_14241 Lactuca sativa HOM05D006995 ORTHO05D008870 1.2e-17 93.2 100 55.0
Medtr3g077017 Medicago truncatula HOM05D006995 ORTHO05D008870 1.6e-17 92.8 102 58.8
QL10p006993 Quercus lobata HOM05D006995 ORTHO05D008870 1.6e-17 92.8 73 60.3
PGSC0003DMG400018185 Solanum tuberosum HOM05D006995 ORTHO05D008870 1.6e-17 92.8 102 56.9
BolC3t18603H Brassica oleracea HOM05D006995 ORTHO05D008870 2.1e-17 92.4 48 95.8
Ca_22795_v3 Cicer arietinum L. HOM05D001863 ORTHO05D001962 6.1e-17 90.9 80 61.2
Thecc.03G024900 Theobroma cacao HOM05D006995 ORTHO05D008870 8.0e-17 90.5 72 59.7
CANSAT80G0726 Cannabis sativa HOM05D006995 ORTHO05D008870 1.0e-16 90.1 102 58.8
CAN.G338.27 Capsicum annuum HOM05D006995 ORTHO05D008870 1.0e-16 90.1 102 55.9
CiPaw.11G020900 Carya illinoinensis HOM05D006995 ORTHO05D008870 1.8e-16 89.4 66 62.1
Duzib205G0595 Durio zibethinus HOM05D006995 ORTHO05D008870 1.8e-16 89.4 73 60.3
HanXRQChr04g0101331 Helianthus annuus HOM05D006995 ORTHO05D008870 2.3e-16 89.0 102 53.9
CiPaw.12G030600 Carya illinoinensis HOM05D006995 ORTHO05D008870 3.0e-16 88.6 102 52.0
Gohir.A12G199700 Gossypium hirsutum HOM05D006995 ORTHO05D008870 4.0e-16 88.2 73 57.5
Gorai.008G217400 Gossypium raimondii HOM05D006995 ORTHO05D008870 4.0e-16 88.2 73 57.5
ATR0824G277 Amborella trichopoda HOM05D006995 ORTHO05D008870 5.2e-16 87.8 102 52.9
Hund02782 Selenicereus undatus HOM05D006995 ORTHO05D008870 5.2e-16 87.8 102 55.9
Cpa.g.sc159.33 Carica papaya HOM05D006995 ORTHO05D008870 6.8e-16 87.4 73 60.3
PGR044G0957 Punica granatum HOM05D006995 ORTHO05D008870 4.4e-15 84.7 93 53.8
Aqoxy5G03762 Aquilegia oxysepala HOM05D006995 ORTHO05D008870 9.8e-15 83.6 102 51.0
Gohir.D12G202400 Gossypium hirsutum HOM05D006995 ORTHO05D008870 2.9e-14 82.0 73 57.5
EL10Ac5g10662 Beta vulgaris HOM05D006995 ORTHO05D008870 3.7e-14 81.6 102 57.8
HPP92_024272 Vanilla planifolia HOM05D006995 ORTHO05D008870 6.4e-14 80.9 102 50.0
ATR0743G118 Amborella trichopoda HOM05D006995 ORTHO05D008870 1.1e-13 80.1 102 49.0
Zm00001eb183600 Zea mays HOM05D006995 ORTHO05D008870 3.2e-13 78.6 102 49.0
Os02g0593400 Oryza sativa ssp. japonica HOM05D006995 ORTHO05D008870 4.1e-13 78.2 102 49.0
Sc04g0001540 Simmondsia chinensis HOM05D006995 ORTHO05D008870 5.4e-13 77.8 102 46.1
Zm00001eb245930 Zea mays HOM05D006995 ORTHO05D008870 5.4e-13 77.8 102 48.0
SGA_v2.0_scaffold90G27846 Striga asiatica HOM05D006995 ORTHO05D008870 9.2e-13 77.0 53 69.8
vmacro16643 Vaccinium macrocarpon HOM05D006995 ORTHO05D008870 1.2e-12 76.6 133 42.1
Ah.11g042030 Amaranthus hybridus HOM05D006995 ORTHO05D008870 3.5e-12 75.1 92 56.5
COL.COLO4_05561 Corchorus olitorius HOM05D006995 ORTHO05D008870 3.0e-11 72.0 48 70.8
Ah.11g051120 Amaranthus hybridus HOM05D006995 ORTHO05D008870 1.1e-10 70.1 82 63.4
Sabra12G0061300 Salix brachista HOM05D006995 ORTHO05D008870 1.1e-10 70.1 48 68.8
Haze_07576 Corylus avellana HOM05D006995 ORTHO05D008870 1.5e-10 69.7 48 68.8
BcaC01g05868 Brassica carinata HOM05D001146 ORTHO05D000973 7.3e-10 67.4 55 67.3
C03p21590 Brassica napus HOM05D001146 ORTHO05D000973 7.3e-10 67.4 55 67.3
C07p20090 Brassica napus HOM05D001146 ORTHO05D000973 7.3e-10 67.4 55 67.3
BolC7t42530H Brassica oleracea HOM05D001146 ORTHO05D000973 7.3e-10 67.4 55 67.3
C06p19720 Brassica napus HOM05D001146 ORTHO05D000973 9.5e-10 67.0 41 85.4
BolC3t14543H Brassica oleracea HOM05D006995 ORTHO05D104637 9.5e-10 67.0 43 83.7
ECA247G3417 Erigeron canadensis HOM05D006995 ORTHO05D008870 2.1e-09 65.9 95 55.8
SHI24880 Sapria himalayana HOM05D006995 ORTHO05D008870 6.2e-09 64.3 89 43.8
BcaC04g20222 Brassica carinata HOM05D001146 ORTHO05D000973 2.3e-08 62.4 49 67.3
C04p43920 Brassica napus HOM05D001146 ORTHO05D000973 2.3e-08 62.4 30 96.7
C09p46490 Brassica napus HOM05D001146 ORTHO05D000973 2.3e-08 62.4 49 67.3
BolC4t25973H Brassica oleracea HOM05D001146 ORTHO05D000973 2.3e-08 62.4 30 96.7
AUR62008151 Chenopodium quinoa HOM05D006995 ORTHO05D008870 5.2e-08 61.2 57 56.1
BcaC09g51351 Brassica carinata HOM05D006995 ORTHO05D008870 6.8e-08 60.8 50 62.0
BolC7t43312H Brassica oleracea HOM05D001146 ORTHO05D000973 1.2e-07 60.1 30 93.3
GSVIVG01007657001 Vitis vinifera HOM05D006995 ORTHO05D008870 1.5e-07 59.7 63 57.1
MELO3C035410.2 Cucumis melo HOM05D006995 ORTHO05D167536 9.8e-07 57.0 45 62.2
DCAR_006239 Daucus carota HOM05D006995 ORTHO05D008870 4.9e-06 54.7 82 50.0


User provided reference genes

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