Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p29780 Brassica napus HOM05D000922 ORTHO05D008200 4.7e-109 397.9 202 100.0
BraA06t25925Z Brassica rapa HOM05D000922 ORTHO05D008200 8.8e-108 393.7 202 99.0
BcaC01g02547 Brassica carinata HOM05D000922 ORTHO05D008200 4.1e-105 384.8 202 96.5
C03p63610 Brassica napus HOM05D000922 ORTHO05D008200 4.1e-105 384.8 202 96.5
BolC3t18619H Brassica oleracea HOM05D000922 ORTHO05D008200 4.1e-105 384.8 202 96.5
BcaB02g09714 Brassica carinata HOM05D000922 ORTHO05D008200 2.6e-104 382.1 203 97.0
Thhalv10004944m.g Eutrema salsugineum HOM05D000922 ORTHO05D008200 2.2e-103 379.0 202 96.0
Sp2g26130 Schrenkiella parvula HOM05D000922 ORTHO05D008200 1.1e-102 376.7 195 97.9
AT5G63000 Arabidopsis thaliana HOM05D000922 ORTHO05D008200 1.6e-101 372.9 202 93.1
AL8G40030 Arabidopsis lyrata HOM05D000922 ORTHO05D008200 3.6e-101 371.7 202 94.1
Carub.0008s2371 Capsella rubella HOM05D000922 ORTHO05D008200 1.5e-99 366.3 202 92.1
CARHR276810 Cardamine hirsuta HOM05D000922 ORTHO05D008200 2.2e-98 362.5 202 90.6
THA.LOC104818216 Tarenaya hassleriana HOM05D000922 ORTHO05D008200 1.3e-82 310.1 201 80.1
COL.COLO4_30070 Corchorus olitorius HOM05D000922 ORTHO05D008200 3.5e-80 302.0 204 74.5
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 5.9e-80 301.2 187 81.3
CiPaw.11G024500 Carya illinoinensis HOM05D000922 ORTHO05D008200 2.9e-79 298.9 205 73.2
Atru.chr9.2496 Acer truncatum HOM05D000922 ORTHO05D008200 1.5e-78 296.6 206 73.8
Manes.14G064200 Manihot esculenta HOM05D000922 ORTHO05D008200 1.9e-78 296.2 201 75.6
Gohir.D09G167000 Gossypium hirsutum HOM05D000922 ORTHO05D008200 5.5e-78 294.7 204 73.0
Gorai.006G188800 Gossypium raimondii HOM05D000922 ORTHO05D008200 5.5e-78 294.7 204 73.0
Glyma.17G088100 Glycine max HOM05D000922 ORTHO05D008200 9.5e-78 293.9 204 74.0
QL10p010977 Quercus lobata HOM05D000922 ORTHO05D008200 9.5e-78 293.9 201 74.6
Gohir.A09G171300 Gossypium hirsutum HOM05D000922 ORTHO05D008200 1.2e-77 293.5 204 72.5
PGSC0003DMG400018154 Solanum tuberosum HOM05D000922 ORTHO05D008200 2.1e-77 292.7 194 75.3
Thecc.03G014600 Theobroma cacao HOM05D000922 ORTHO05D008200 2.8e-77 292.4 201 73.6
vmacro19401 Vaccinium macrocarpon HOM05D000922 ORTHO05D008200 8.0e-77 290.8 205 73.7
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 1.4e-76 290.0 204 73.5
CAN.G1166.6 Capsicum annuum HOM05D000922 ORTHO05D008200 1.8e-76 289.7 194 75.8
Psat4g058400 Pisum sativum HOM05D000922 ORTHO05D008200 1.8e-76 289.7 203 72.4
Lj5C125T23 Lonicera japonica HOM05D000922 ORTHO05D008200 3.0e-76 288.9 205 74.1
CSS0000249 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D008200 4.0e-76 288.5 207 73.9
TWI39G0231 Tripterygium wilfordii HOM05D000922 ORTHO05D008200 8.9e-76 287.3 202 73.8
arahy.Tifrunner.gnm1.ann1.RA2V7W Arachis hypogaea HOM05D000922 ORTHO05D008200 1.2e-75 287.0 204 72.1
Prupe.5G171600 Prunus persica HOM05D000922 ORTHO05D008200 1.2e-75 287.0 204 71.6
Nn3g16820 Nelumbo nucifera HOM05D000922 ORTHO05D008200 1.5e-75 286.6 205 71.2
Ciclev10022297m.g Citrus clementina HOM05D000922 ORTHO05D008200 2.0e-75 286.2 203 72.9
DCAR_026150 Daucus carota HOM05D000922 ORTHO05D008200 2.0e-75 286.2 201 73.6
Dinv20636 Davidia involucrata HOM05D000922 ORTHO05D008200 2.6e-75 285.8 206 71.8
FAN04G0130 Fragaria x ananassa HOM05D000922 ORTHO05D008200 3.4e-75 285.4 202 71.8
Lsat_1_v5_gn_5_15061 Lactuca sativa HOM05D000922 ORTHO05D008200 3.4e-75 285.4 196 73.0
FAN18G2418 Fragaria x ananassa HOM05D000922 ORTHO05D008200 4.4e-75 285.0 202 71.8
FAN18G3465 Fragaria x ananassa HOM05D000922 ORTHO05D008200 4.4e-75 285.0 202 71.8
Nitab4.5_0000514g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 4.4e-75 285.0 195 73.8
ClCG01G013230 Citrullus lanatus HOM05D000922 ORTHO05D008200 5.7e-75 284.6 206 69.9
FAN13G3248 Fragaria x ananassa HOM05D000922 ORTHO05D008200 5.7e-75 284.6 202 71.8
GSVIVG01007722001 Vitis vinifera HOM05D000922 ORTHO05D008200 5.7e-75 284.6 205 70.2
Phvul.003G201800 Phaseolus vulgaris HOM05D000922 ORTHO05D008200 7.5e-75 284.3 202 72.3
Nitab4.5_0008678g0030 Nicotiana tabacum HOM05D000922 ORTHO05D008200 1.3e-74 283.5 186 76.9
CsaV3_1G008590 Cucumis sativus L. HOM05D000922 ORTHO05D008200 2.2e-74 282.7 206 68.9
FvH4_5g05480 Fragaria vesca HOM05D000922 ORTHO05D008200 2.2e-74 282.7 202 71.3
MSTRG.11466 Avicennia marina HOM05D000922 ORTHO05D008200 2.8e-74 282.3 205 69.3
Eucgr.G00068 Eucalyptus grandis HOM05D000922 ORTHO05D008200 2.8e-74 282.3 205 71.2
Solyc03g112810.3 Solanum lycopersicum HOM05D000922 ORTHO05D008200 2.8e-74 282.3 201 72.6
Migut.O00114 Erythranthe guttata HOM05D000922 ORTHO05D008200 3.7e-74 282.0 193 72.0
Duzib205G0455 Durio zibethinus HOM05D000922 ORTHO05D008200 4.9e-74 281.6 188 76.1
MELO3C002273.2 Cucumis melo HOM05D000922 ORTHO05D008200 8.3e-74 280.8 206 68.4
Lj4g0019609 Lotus japonicus HOM05D000922 ORTHO05D008200 8.3e-74 280.8 205 71.7
CANSAT80G0818 Cannabis sativa HOM05D000922 ORTHO05D008200 1.1e-73 280.4 196 72.4
MD06G1172200 Malus domestica HOM05D000922 ORTHO05D008200 1.1e-73 280.4 204 70.6
Hund09449 Selenicereus undatus HOM05D000922 ORTHO05D008200 1.1e-73 280.4 205 70.2
Ca_21935_v3 Cicer arietinum L. HOM05D000922 ORTHO05D008200 1.8e-73 279.6 205 70.7
RcHm_v2.0_Chr7g0193351 Rosa chinensis HOM05D000922 ORTHO05D008200 1.8e-73 279.6 204 69.6
Medtr4g105570 Medicago truncatula HOM05D000922 ORTHO05D008200 2.4e-73 279.3 202 69.8
Sabra15G0103100 Salix brachista HOM05D000922 ORTHO05D008200 4.1e-73 278.5 184 75.5
Sed0005243 Sechium edule HOM05D000922 ORTHO05D008200 4.1e-73 278.5 204 70.6
Sopen03g031890 Solanum pennellii HOM05D000922 ORTHO05D008200 7.0e-73 277.7 184 76.1
Cc04_g12150 Coffea canephora HOM05D000922 ORTHO05D008200 9.2e-73 277.3 199 72.4
VMungo1215G1163 Vigna mungo HOM05D000922 ORTHO05D008200 9.2e-73 277.3 199 72.9
Lalb_Chr12g0201661 Lupinus albus HOM05D000922 ORTHO05D008200 3.5e-72 275.4 200 71.5
Potri.015G078600 Populus trichocarpa HOM05D000922 ORTHO05D008200 3.5e-72 275.4 195 71.8
SalBow1G6106 Salvia bowleyana HOM05D000922 ORTHO05D008200 4.5e-72 275.0 201 69.2
SalBow5G5253 Salvia bowleyana HOM05D000922 ORTHO05D008200 4.5e-72 275.0 201 69.2
MD14G1178100 Malus domestica HOM05D000922 ORTHO05D008200 7.8e-72 274.2 201 69.7
TAR629G0323 Trochodendron aralioides HOM05D000922 ORTHO05D008200 1.3e-71 273.5 205 70.2
arahy.Tifrunner.gnm1.ann1.3C9G4H Arachis hypogaea HOM05D000922 ORTHO05D008200 2.3e-71 272.7 198 71.2
ECA246G4361 Erigeron canadensis HOM05D000922 ORTHO05D008200 2.9e-71 272.3 195 70.3
HPP92_011872 Vanilla planifolia HOM05D000922 ORTHO05D008200 2.9e-71 272.3 194 68.6
Aqoxy3G02881 Aquilegia oxysepala HOM05D000922 ORTHO05D008200 1.5e-70 270.0 204 67.6
Haze_07527 Corylus avellana HOM05D000922 ORTHO05D008200 1.9e-70 269.6 220 65.9
PGR044G1577 Punica granatum HOM05D000922 ORTHO05D008200 1.9e-70 269.6 205 68.8
Peaxi162Scf00089g01850 Petunia axillaris HOM05D000922 ORTHO05D008200 5.6e-70 268.1 206 69.4
AUR62010095 Chenopodium quinoa HOM05D000922 ORTHO05D008200 7.3e-70 267.7 189 72.5
AUR62013091 Chenopodium quinoa HOM05D000922 ORTHO05D008200 7.3e-70 267.7 191 72.8
SGA_v2.0_scaffold90G27896 Striga asiatica HOM05D000922 ORTHO05D008200 1.2e-69 266.9 183 72.7
unitig_0.g1435 Utricularia gibba HOM05D000922 ORTHO05D008200 4.7e-69 265.0 201 66.7
FAN08G1692 Fragaria x ananassa HOM05D000922 ORTHO05D008200 1.0e-68 263.8 223 64.1
Os01g0271000 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D008200 2.3e-68 262.7 199 69.8
arahy.Tifrunner.gnm1.ann1.R1G0J4 Arachis hypogaea HOM05D000922 ORTHO05D008200 6.8e-68 261.2 197 69.0
EL10Ac9g21439 Beta vulgaris HOM05D000922 ORTHO05D008200 6.8e-68 261.2 233 60.5
Zm00001eb332970 Zea mays HOM05D000922 ORTHO05D008200 1.2e-67 260.4 201 67.7
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 2.0e-67 259.6 204 69.1
PGR044G0925 Punica granatum HOM05D000922 ORTHO05D008200 5.8e-67 258.1 205 65.4
MBI16_g39217_MAGBIO Magnolia biondii HOM05D000922 ORTHO05D008200 3.7e-66 255.4 225 62.2
CDE07G1875 Ceratophyllum demersum HOM05D000922 ORTHO05D008200 8.3e-66 254.2 174 74.7
PSO832G1073 Papaver somniferum HOM05D000922 ORTHO05D008200 1.2e-64 250.4 205 63.9
arahy.Tifrunner.gnm1.ann1.HJA5XH Arachis hypogaea HOM05D000922 ORTHO05D008200 6.2e-61 238.0 240 55.4
Sc04g0001730 Simmondsia chinensis HOM05D000922 ORTHO05D008200 6.2e-61 238.0 161 77.0
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 4.0e-60 235.3 314 46.2
SHI38067 Sapria himalayana HOM05D000922 ORTHO05D008200 4.4e-59 231.9 204 59.8
HanXRQChr05g0155781 Helianthus annuus HOM05D000922 ORTHO05D008200 2.4e-57 226.1 160 72.5
ATR1091G108 Amborella trichopoda HOM05D000922 ORTHO05D008200 1.2e-53 213.8 153 70.6
Manes.05G195400 Manihot esculenta HOM05D000922 ORTHO05D008200 6.4e-50 201.4 133 75.2
TPR.G37467 Trifolium pratense HOM05D000922 ORTHO05D008200 6.6e-47 191.4 134 72.4
arahy.Tifrunner.gnm1.ann1.UWQ2W3 Arachis hypogaea HOM05D000922 ORTHO05D008200 1.5e-46 190.3 134 70.9
Cfa019117 Carpinus fangiana HOM05D000922 ORTHO05D008200 4.7e-45 185.3 116 79.3
arahy.Tifrunner.gnm1.ann1.PQAW0Q Arachis hypogaea HOM05D000922 ORTHO05D008200 1.1e-44 184.1 118 77.1
TAR371G0469 Trochodendron aralioides HOM05D000922 ORTHO05D008200 7.6e-43 177.9 133 68.4
SEGI_40590 Sequoiadendron giganteum HOM05D000922 ORTHO05D008200 8.4e-42 174.5 152 60.5
Oeu023435.1 Olea europaea HOM05D000922 ORTHO05D008200 1.2e-40 170.6 106 77.4
EL10Ac5g12019 Beta vulgaris HOM05D000922 ORTHO05D008200 7.8e-40 167.9 118 70.3
Glyma.05G038900 Glycine max HOM05D000922 ORTHO05D008200 6.6e-39 164.9 108 75.0
Peaxi162Scf00089g01839 Petunia axillaris HOM05D000922 ORTHO05D008200 9.3e-33 144.4 189 50.8
Mapoly0191s0008 Marchantia polymorpha HOM05D000922 ORTHO05D008200 2.7e-32 142.9 184 44.6
AagrBONN_evm.TU.Sc2ySwM_228.4800 Anthoceros agrestis HOM05D000922 ORTHO05D008200 6.0e-32 141.7 177 42.9
arahy.Tifrunner.gnm1.ann1.Q2CJ89 Arachis hypogaea HOM05D000922 ORTHO05D008200 7.8e-32 141.4 147 53.7
TPR.G11031 Trifolium pratense HOM05D000922 ORTHO05D008200 4.9e-26 122.1 92 69.6
arahy.Tifrunner.gnm1.ann1.JAVP2G Arachis hypogaea HOM05D000922 ORTHO05D008200 1.0e-23 114.4 134 48.5
SMO111G0048 Selaginella moellendorffii HOM05D000922 ORTHO05D008200 1.8e-23 113.6 138 46.4
Pp3c17_17380 Physcomitrium patens HOM05D000922 ORTHO05D008200 2.5e-22 109.8 186 36.0
Cpa.g.sc76.32 Carica papaya HOM05D000922 ORTHO05D008200 6.2e-21 105.1 188 37.8
CBR_g38960 Chara braunii HOM05D000922 ORTHO05D008200 9.0e-20 101.3 225 31.6
MCO04G383 Micromonas commoda HOM05D000922 ORTHO05D008200 5.0e-10 68.9 166 31.9
arahy.Tifrunner.gnm1.ann1.RUR1T0 Arachis hypogaea HOM05D000034 ORTHO05D000037 1.4e-09 67.4 48 68.8
Medtr4g105580 Medicago truncatula HOM05D000922 ORTHO05D008200 7.9e-08 61.6 71 45.1
SGA_v2.0_scaffold25G11050 Striga asiatica HOM05D000922 ORTHO05D403871 1.5e-06 57.4 35 77.1
SGA_v2.0_scaffold116G32233 Striga asiatica HOM05D000922 ORTHO05D008200 5.7e-06 55.5 38 65.8


User provided reference genes

Program Settings