Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 1.7e-182 642.9 418 100.0
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 1.1e-165 587.0 424 81.1
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 2.3e-158 562.8 420 80.2
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 2.3e-158 562.8 420 80.2
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 5.6e-157 558.1 420 79.5
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 4.1e-152 542.0 423 81.3
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 4.7e-132 475.3 333 81.7
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 3.4e-130 469.2 419 69.5
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 6.7e-118 428.3 431 64.5
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 3.5e-111 406.0 430 67.2
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 2.9e-105 386.3 491 56.0
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 1.8e-94 350.5 343 65.9
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 2.5e-72 276.9 333 55.0
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 5.7e-53 212.6 325 46.2
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 4.1e-51 206.5 314 47.8
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 1.2e-50 204.9 327 45.3
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.0e-49 201.8 327 45.6
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 6.6e-49 199.1 311 45.7
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.1e-48 198.4 324 46.0
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 4.3e-48 196.4 335 44.8
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.1e-47 194.1 297 47.8
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 3.0e-46 190.3 325 44.9
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 8.9e-46 188.7 301 46.8
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.5e-45 188.0 248 52.0
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 2.6e-45 187.2 303 45.9
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 2.6e-45 187.2 265 49.8
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 2.6e-45 187.2 318 44.0
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 3.4e-45 186.8 299 46.2
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 4.4e-45 186.4 258 47.7
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 5.8e-45 186.0 283 45.6
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 9.8e-45 185.3 281 48.0
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 9.8e-45 185.3 294 44.9
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.3e-44 184.9 298 43.3
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 1.7e-44 184.5 310 44.2
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 3.7e-44 183.3 321 43.6
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 6.4e-44 182.6 334 42.5
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 7.0e-43 179.1 258 46.9
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 7.0e-43 179.1 328 42.7
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 9.2e-43 178.7 298 46.3
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 9.2e-43 178.7 271 46.1
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 1.6e-42 177.9 274 46.0
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 1.6e-42 177.9 333 41.7
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 1.6e-42 177.9 288 46.2
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 3.5e-42 176.8 268 48.9
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 4.6e-42 176.4 331 43.2
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 4.6e-42 176.4 279 43.7
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 7.8e-42 175.6 274 44.5
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 3.0e-41 173.7 247 46.6
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 5.0e-41 172.9 294 45.6
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 8.6e-41 172.2 322 41.6
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 1.1e-40 171.8 276 46.4
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.5e-40 171.4 279 42.7
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 1.9e-40 171.0 300 44.3
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 2.5e-40 170.6 307 42.3
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 3.3e-40 170.2 334 39.5
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 3.3e-40 170.2 322 41.3
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 4.3e-40 169.9 277 44.0
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 5.6e-40 169.5 326 41.7
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 5.6e-40 169.5 316 41.1
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 7.3e-40 169.1 267 46.4
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 7.3e-40 169.1 274 44.5
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.2e-39 168.3 234 48.3
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 2.1e-39 167.5 291 44.7
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 2.1e-39 167.5 302 42.1
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 3.6e-39 166.8 273 45.1
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 4.7e-39 166.4 338 38.2
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 4.7e-39 166.4 324 40.4
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 1.4e-38 164.9 332 41.3
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 1.4e-38 164.9 312 41.3
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 1.4e-38 164.9 282 45.0
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 1.8e-38 164.5 331 39.9
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.8e-38 164.5 281 43.1
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.3e-38 164.1 311 41.5
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 5.2e-38 162.9 330 40.0
CARHR276330 Cardamine hirsuta HOM05D005535 ORTHO05D018759 1.2e-37 161.8 158 65.8
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 1.2e-37 161.8 326 40.2
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.2e-37 161.8 311 40.5
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 2.0e-37 161.0 282 42.9
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 2.6e-37 160.6 239 47.7
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 4.4e-37 159.8 265 43.8
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 5.8e-37 159.5 331 39.9
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 7.5e-37 159.1 231 48.5
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 1.3e-36 158.3 276 44.9
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.7e-36 157.9 270 44.8
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 3.7e-36 156.8 270 44.1
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 4.9e-36 156.4 292 41.4
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 6.4e-36 156.0 272 43.8
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 8.3e-36 155.6 330 38.5
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 8.3e-36 155.6 330 40.0
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 1.1e-35 155.2 340 38.8
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 5.4e-35 152.9 296 40.5
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 7.0e-35 152.5 234 45.3
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 7.0e-35 152.5 323 39.6
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 9.2e-35 152.1 278 43.9
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 1.6e-34 151.4 325 41.2
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 1.6e-34 151.4 286 42.3
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 2.1e-34 151.0 197 50.8
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 6.0e-34 149.4 334 38.9
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 7.8e-34 149.1 320 38.4
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 1.0e-33 148.7 342 37.4
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 1.0e-33 148.7 296 39.9
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 1.0e-33 148.7 282 41.1
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 1.3e-33 148.3 342 38.0
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 1.3e-33 148.3 332 37.7
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.7e-33 147.9 314 39.8
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 1.7e-33 147.9 274 41.2
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 5.0e-33 146.4 326 38.3
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 1.1e-32 145.2 339 38.6
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 1.9e-32 144.4 270 42.2
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 1.9e-32 144.4 258 42.2
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 2.5e-32 144.1 343 37.3
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 2.8e-31 140.6 320 36.9
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 2.8e-31 140.6 334 37.1
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 4.7e-31 139.8 280 38.6
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 4.7e-31 139.8 250 43.6
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 8.1e-31 139.0 292 39.0
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 1.1e-30 138.7 262 40.5
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 1.1e-30 138.7 289 39.4
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 2.3e-30 137.5 343 38.2
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 8.9e-30 135.6 325 38.5
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 2.6e-29 134.0 325 39.1
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 2.6e-29 134.0 222 41.4
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 7.5e-29 132.5 316 40.5
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 9.9e-29 132.1 323 38.4
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.3e-28 131.7 324 37.7
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 2.9e-28 130.6 281 40.2
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 2.7e-26 124.0 311 35.7
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 7.8e-26 122.5 304 36.8
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 2.3e-25 120.9 307 38.4
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 1.1e-24 118.6 288 36.8
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 2.4e-22 110.9 334 34.4
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 1.6e-18 98.2 290 33.1
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.9e-16 91.3 183 39.3
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 9.6e-16 89.0 263 33.5
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 2.7e-10 70.9 143 33.6
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 6.0e-10 69.7 157 33.1
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 1.9e-08 64.7 247 27.5
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 1.9e-08 64.7 227 31.3
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 5.6e-08 63.2 124 36.3
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 7.3e-08 62.8 124 36.3
THA.LOC104821571 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 7.3e-08 62.8 167 37.1
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 1.3e-07 62.0 152 28.9
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 1.6e-07 61.6 124 34.7
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 4.8e-07 60.1 177 29.9
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 6.2e-07 59.7 108 39.8
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 8.1e-07 59.3 152 29.6
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 8.1e-07 59.3 112 35.7
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 1.8e-06 58.2 211 28.4
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 2.4e-06 57.8 111 34.2
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 2.4e-06 57.8 159 29.6
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 4.0e-06 57.0 45 64.4
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 6.9e-06 56.2 170 31.2
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 6.9e-06 56.2 72 40.3
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 9.0e-06 55.8 73 42.5
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 9.0e-06 55.8 151 33.8


User provided reference genes

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