Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 2.7e-82 308.5 146 100.0
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 1.9e-80 302.4 146 98.6
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 3.4e-77 291.6 146 93.2
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 3.8e-76 288.1 146 93.2
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 9.2e-75 283.5 147 92.5
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 2.7e-74 282.0 147 90.5
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 9.0e-70 266.9 131 94.7
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.9e-68 261.9 149 85.9
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 4.9e-68 261.2 147 85.7
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.1e-67 260.0 147 85.0
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 4.2e-67 258.1 150 88.0
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 5.4e-67 257.7 149 84.6
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 2.7e-66 255.4 146 80.1
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 4.6e-66 254.6 147 85.0
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 4.6e-66 254.6 147 85.0
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 6.0e-66 254.2 147 84.4
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 6.0e-66 254.2 147 84.4
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 2.3e-65 252.3 139 87.8
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 3.0e-65 251.9 149 83.2
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 3.9e-65 251.5 148 85.1
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 1.3e-63 246.5 146 76.0
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 6.2e-63 244.2 151 79.5
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 2.4e-62 242.3 146 80.8
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 2.4e-62 242.3 147 76.9
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 3.1e-62 241.9 147 76.9
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 3.1e-62 241.9 146 75.3
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 5.3e-62 241.1 150 80.0
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.2e-61 240.0 147 84.4
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 2.0e-61 239.2 146 74.0
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 4.5e-61 238.0 146 74.0
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 4.5e-61 238.0 146 74.0
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 5.8e-61 237.7 147 74.8
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 9.9e-61 236.9 146 74.7
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 9.9e-61 236.9 146 71.9
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 1.3e-60 236.5 150 74.0
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 1.7e-60 236.1 146 74.0
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 1.7e-60 236.1 146 74.7
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 1.7e-60 236.1 146 74.7
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 2.2e-60 235.7 147 74.8
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 2.2e-60 235.7 146 74.0
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 3.8e-60 235.0 146 74.7
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 6.4e-60 234.2 146 75.3
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 8.4e-60 233.8 146 71.9
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 1.1e-59 233.4 150 76.0
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 1.1e-59 233.4 146 74.7
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.1e-59 233.4 147 75.5
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.4e-59 233.0 146 72.6
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 1.9e-59 232.6 146 70.5
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 2.4e-59 232.3 146 71.2
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 3.2e-59 231.9 146 72.6
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 4.2e-59 231.5 146 73.3
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 4.2e-59 231.5 147 72.8
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 5.4e-59 231.1 146 72.6
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 5.4e-59 231.1 148 73.6
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 7.1e-59 230.7 150 76.7
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 7.1e-59 230.7 150 76.7
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 9.3e-59 230.3 146 71.2
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 9.3e-59 230.3 146 71.9
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 1.2e-58 229.9 146 72.6
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 1.2e-58 229.9 146 72.6
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 1.6e-58 229.6 146 71.2
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 1.6e-58 229.6 146 73.3
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 1.6e-58 229.6 146 71.9
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 1.6e-58 229.6 148 73.6
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 2.1e-58 229.2 146 71.2
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 2.1e-58 229.2 146 69.9
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 2.7e-58 228.8 134 79.1
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 2.7e-58 228.8 146 71.2
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 3.5e-58 228.4 147 72.8
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 3.5e-58 228.4 147 72.1
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 3.5e-58 228.4 147 72.1
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 3.5e-58 228.4 147 72.1
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 3.5e-58 228.4 147 72.1
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 4.6e-58 228.0 146 71.2
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 4.6e-58 228.0 146 71.9
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 6.0e-58 227.6 150 76.0
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 6.0e-58 227.6 150 76.0
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 6.0e-58 227.6 150 76.0
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 6.0e-58 227.6 148 72.3
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 7.9e-58 227.3 146 71.2
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.3e-57 226.5 145 70.3
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 2.3e-57 225.7 148 71.6
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 3.0e-57 225.3 146 68.5
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 3.9e-57 224.9 150 75.3
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 3.9e-57 224.9 146 69.9
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 5.1e-57 224.6 146 68.5
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 5.1e-57 224.6 150 75.3
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 5.1e-57 224.6 147 72.1
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 6.7e-57 224.2 135 73.3
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 8.7e-57 223.8 146 68.5
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 1.5e-56 223.0 146 70.5
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 1.9e-56 222.6 147 68.7
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.9e-56 222.6 148 72.3
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 3.3e-56 221.9 146 67.8
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 4.3e-56 221.5 146 69.2
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 4.3e-56 221.5 148 68.9
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 4.3e-56 221.5 137 74.5
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 4.3e-56 221.5 146 69.2
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 5.6e-56 221.1 146 68.5
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 5.6e-56 221.1 146 70.5
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 7.4e-56 220.7 150 76.7
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 7.4e-56 220.7 146 68.5
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 7.4e-56 220.7 146 68.5
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 9.6e-56 220.3 146 69.2
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.6e-55 219.5 147 69.4
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 1.6e-55 219.5 148 70.9
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 1.6e-55 219.5 146 69.2
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 2.1e-55 219.2 150 72.0
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 3.7e-55 218.4 148 69.6
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 4.8e-55 218.0 148 68.9
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 4.8e-55 218.0 146 68.5
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 4.8e-55 218.0 145 68.3
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 6.2e-55 217.6 146 66.4
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 6.2e-55 217.6 147 76.2
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 6.2e-55 217.6 147 76.2
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 6.2e-55 217.6 147 76.2
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 6.2e-55 217.6 146 68.5
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 1.1e-54 216.9 146 67.8
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 1.1e-54 216.9 151 69.5
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 2.4e-54 215.7 146 67.8
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 4.0e-54 214.9 146 69.9
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 1.2e-53 213.4 147 67.3
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 1.5e-53 213.0 146 65.8
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.6e-53 212.2 140 68.6
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 7.6e-53 210.7 132 74.2
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 7.6e-53 210.7 132 74.2
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.7e-52 209.5 130 74.6
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.7e-52 209.5 132 73.5
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 2.9e-52 208.8 146 62.3
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 3.8e-52 208.4 144 64.6
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 4.9e-52 208.0 146 65.1
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 3.2e-51 205.3 146 63.0
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 1.2e-50 203.4 125 74.4
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 3.0e-49 198.7 101 96.0
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 6.7e-49 197.6 132 72.0
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 3.3e-48 195.3 151 64.9
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 4.3e-48 194.9 146 63.0
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 7.4e-48 194.1 147 61.2
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 7.4e-48 194.1 117 73.5
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 1.7e-44 183.0 146 61.6
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 1.6e-42 176.4 146 60.3
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 4.6e-42 174.9 123 65.9
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 6.0e-42 174.5 134 62.7
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 3.8e-36 155.2 146 57.5
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 9.4e-35 150.6 146 53.4
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.4e-33 146.7 146 54.1
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 1.8e-33 146.4 101 67.3
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 3.1e-30 135.6 149 47.7
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 5.3e-30 134.8 97 69.1
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 5.0e-28 128.3 135 51.1
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 6.5e-28 127.9 127 58.3
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 2.6e-21 105.9 147 41.5
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 7.2e-19 97.8 67 71.6
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 5.2e-17 91.7 75 62.7
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 2.6e-16 89.4 90 46.7
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 2.3e-09 66.2 37 73.0
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 4.4e-08 62.0 85 37.6


User provided reference genes

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