Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p27180 Brassica napus HOM05D011101 ORTHO05D013180 2.1e-87 325.9 186 100.0
BraA06t25660Z Brassica rapa HOM05D011101 ORTHO05D013180 2.1e-84 315.8 186 97.8
BcaB02g10698 Brassica carinata HOM05D011101 ORTHO05D013180 1.6e-76 289.7 184 91.3
Thhalv10011004m.g Eutrema salsugineum HOM05D011101 ORTHO05D013180 8.7e-70 267.3 184 86.4
CARHR156120 Cardamine hirsuta HOM05D011101 ORTHO05D013180 3.3e-69 265.4 184 83.7
A06p20170 Brassica napus HOM05D011101 ORTHO05D013180 1.7e-65 253.1 184 81.0
BcaB01g00919 Brassica carinata HOM05D011101 ORTHO05D013180 5.0e-65 251.5 184 76.1
BcaC01g01820 Brassica carinata HOM05D011101 ORTHO05D013180 5.0e-65 251.5 184 79.9
C03p71620 Brassica napus HOM05D011101 ORTHO05D013180 5.0e-65 251.5 184 79.9
BolC3t19453H Brassica oleracea HOM05D011101 ORTHO05D013180 5.0e-65 251.5 184 79.9
Sp5g14400 Schrenkiella parvula HOM05D011101 ORTHO05D013180 8.5e-65 250.8 186 81.7
BraA06t25101Z Brassica rapa HOM05D011101 ORTHO05D013180 1.9e-64 249.6 184 80.4
AL5G26710 Arabidopsis lyrata HOM05D011101 ORTHO05D013180 1.2e-63 246.9 184 82.1
BcaC01g02277 Brassica carinata HOM05D011101 ORTHO05D013180 1.5e-61 240.0 184 74.5
AT3G47480 Arabidopsis thaliana HOM05D011101 ORTHO05D013180 7.4e-61 237.7 184 79.3
Carub.0005s1357 Capsella rubella HOM05D011101 ORTHO05D013180 3.5e-50 202.2 160 77.5
C03p67100 Brassica napus HOM05D011101 ORTHO05D013180 3.6e-47 192.2 184 64.1
BolC3t18991H Brassica oleracea HOM05D011101 ORTHO05D013180 3.6e-47 192.2 184 64.1
Actinidia35004 Actinidia chinensis HOM05D002107 ORTHO05D002067 8.9e-14 81.3 120 41.7
Cfa018931 Carpinus fangiana HOM05D002107 ORTHO05D002067 1.3e-09 67.4 194 33.5
CSS0005295 Camellia sinensis var. sinensis HOM05D002107 ORTHO05D002067 6.6e-09 65.1 105 42.9
Prupe.3G266000 Prunus persica HOM05D002107 ORTHO05D002067 6.6e-09 65.1 142 38.7
Prupe.5G194800 Prunus persica HOM05D002107 ORTHO05D002067 6.6e-09 65.1 95 51.6
FAN05G5651 Fragaria x ananassa HOM05D002107 ORTHO05D002067 1.5e-08 63.9 143 41.3
MD00G1125300 Malus domestica HOM05D002107 ORTHO05D002067 1.9e-08 63.5 67 46.3
Aa31LG2G4190 Aethionema arabicum HOM05D002107 ORTHO05D002067 4.3e-08 62.4 100 41.0
QL10p017195 Quercus lobata HOM05D002107 ORTHO05D002067 4.3e-08 62.4 207 36.7
Haze_07315 Corylus avellana HOM05D002107 ORTHO05D002067 7.3e-08 61.6 184 36.4
MD06G1194700 Malus domestica HOM05D002107 ORTHO05D002067 7.3e-08 61.6 209 32.5
CSS0038574 Camellia sinensis var. sinensis HOM05D002107 ORTHO05D002067 9.5e-08 61.2 198 36.4
CSS0013301 Camellia sinensis var. sinensis HOM05D002107 ORTHO05D002067 1.2e-07 60.8 95 37.9
FAN08G2822 Fragaria x ananassa HOM05D002107 ORTHO05D002067 1.2e-07 60.8 191 37.7
Glyma.18G260700 Glycine max HOM05D002107 ORTHO05D002067 1.2e-07 60.8 116 47.4
Sed0018974 Sechium edule HOM05D002107 ORTHO05D002067 1.2e-07 60.8 114 43.9
Lj4P111T48 Lonicera japonica HOM05D002107 ORTHO05D002067 2.8e-07 59.7 95 53.7
Actinidia19036 Actinidia chinensis HOM05D002107 ORTHO05D002067 3.6e-07 59.3 69 47.8
Dinv34141 Davidia involucrata HOM05D002107 ORTHO05D002067 3.6e-07 59.3 148 39.9
FAN09G2398 Fragaria x ananassa HOM05D002107 ORTHO05D002067 4.7e-07 58.9 143 39.9
SalBow1G3475 Salvia bowleyana HOM05D002107 ORTHO05D002067 4.7e-07 58.9 67 43.3
SalBow1G4949 Salvia bowleyana HOM05D002107 ORTHO05D002067 4.7e-07 58.9 67 43.3
Solyc02g067220.4 Solanum lycopersicum HOM05D002107 ORTHO05D002067 4.7e-07 58.9 64 45.3
CiPaw.12G012900 Carya illinoinensis HOM05D002107 ORTHO05D002067 6.2e-07 58.5 111 45.9
Ciclev10022426m.g Citrus clementina HOM05D002107 ORTHO05D002067 6.2e-07 58.5 186 31.2
FvH4_6g48240 Fragaria vesca HOM05D002107 ORTHO05D002067 6.2e-07 58.5 143 39.9
FAN02G0855 Fragaria x ananassa HOM05D002107 ORTHO05D002067 6.2e-07 58.5 143 39.9
FAN05G0674 Fragaria x ananassa HOM05D002107 ORTHO05D002067 6.2e-07 58.5 143 39.9
FAN14G4105 Fragaria x ananassa HOM05D002107 ORTHO05D002067 6.2e-07 58.5 143 39.9
Sopen02g016400 Solanum pennellii HOM05D002107 ORTHO05D002067 6.2e-07 58.5 61 47.5
PGSC0003DMG400025131 Solanum tuberosum HOM05D002107 ORTHO05D002067 6.2e-07 58.5 79 39.2
Cpa.g.sc111.15 Carica papaya HOM05D002107 ORTHO05D002067 8.0e-07 58.2 188 35.6
HanXRQChr12g0362211 Helianthus annuus HOM05D002107 ORTHO05D002067 8.0e-07 58.2 64 65.6
Rhsim10G0037300 Rhododendron simsii HOM05D002107 ORTHO05D002067 8.0e-07 58.2 91 52.7
CSS0029813 Camellia sinensis var. sinensis HOM05D002107 ORTHO05D002067 1.1e-06 57.8 95 50.5
Haze_14513 Corylus avellana HOM05D002107 ORTHO05D002067 1.1e-06 57.8 69 60.9
Lj5C110T20 Lonicera japonica HOM05D002107 ORTHO05D002067 1.1e-06 57.8 106 36.8
PGR083G0276 Punica granatum HOM05D002107 ORTHO05D002067 1.1e-06 57.8 88 51.1
TWI32G0278 Tripterygium wilfordii HOM05D002107 ORTHO05D002067 1.1e-06 57.8 71 45.1
Ca_18827_v3 Cicer arietinum L. HOM05D002107 ORTHO05D002067 1.4e-06 57.4 68 44.1
Ca_30086_v3 Cicer arietinum L. HOM05D002107 ORTHO05D002067 1.4e-06 57.4 68 44.1
PSO017G4518 Papaver somniferum HOM05D002107 ORTHO05D002067 1.4e-06 57.4 94 51.1
QL10p017202 Quercus lobata HOM05D002107 ORTHO05D002067 1.4e-06 57.4 118 47.5
Dinv33764 Davidia involucrata HOM05D002107 ORTHO05D002067 1.8e-06 57.0 67 52.2
Gohir.A04G147000 Gossypium hirsutum HOM05D002107 ORTHO05D002067 1.8e-06 57.0 149 30.9
Lj3P1036T18 Lonicera japonica HOM05D002107 ORTHO05D002067 1.8e-06 57.0 69 63.8
MELO3C001988.2 Cucumis melo HOM05D002107 ORTHO05D002067 2.3e-06 56.6 112 33.9
FvH4_5g14810 Fragaria vesca HOM05D002107 ORTHO05D002067 2.3e-06 56.6 199 34.7
FAN18G3479 Fragaria x ananassa HOM05D002107 ORTHO05D002067 2.3e-06 56.6 199 34.7
Gohir.A05G366900 Gossypium hirsutum HOM05D002107 ORTHO05D002067 2.3e-06 56.6 69 43.5
Gohir.D04G047800 Gossypium hirsutum HOM05D002107 ORTHO05D002067 2.3e-06 56.6 69 43.5
Gorai.012G053200 Gossypium raimondii HOM05D002107 ORTHO05D002067 2.3e-06 56.6 69 43.5
C04p46070 Brassica napus HOM05D002107 ORTHO05D002067 3.1e-06 56.2 111 34.2
BolC4t26192H Brassica oleracea HOM05D002107 ORTHO05D002067 3.1e-06 56.2 111 34.2
Cc07_g03480 Coffea canephora HOM05D002107 ORTHO05D002067 3.1e-06 56.2 140 32.1
DCAR_005558 Daucus carota HOM05D002107 ORTHO05D002067 3.1e-06 56.2 95 41.1
SalBow3G1393 Salvia bowleyana HOM05D002107 ORTHO05D002067 3.1e-06 56.2 65 43.1
Actinidia38765 Actinidia chinensis HOM05D000556 ORTHO05D002067 4.0e-06 55.8 120 33.3
CiPaw.04G016200 Carya illinoinensis HOM05D002107 ORTHO05D002067 4.0e-06 55.8 92 38.0
Hma1.2p1_0409F.1_g146870 Hydrangea macrophylla HOM05D002107 ORTHO05D002067 4.0e-06 55.8 204 31.4
MD09G1052700 Malus domestica HOM05D002107 ORTHO05D002067 4.0e-06 55.8 120 43.3
Nitab4.5_0000568g0010 Nicotiana tabacum HOM05D002107 ORTHO05D002067 4.0e-06 55.8 96 44.8
SGA_v2.0_scaffold413G51189 Striga asiatica HOM05D002107 ORTHO05D002067 4.0e-06 55.8 124 40.3
TWI34G1788 Tripterygium wilfordii HOM05D002107 ORTHO05D002067 4.0e-06 55.8 95 38.9
Aqoxy3G03427 Aquilegia oxysepala HOM05D002107 ORTHO05D002067 5.2e-06 55.5 187 37.4
Duzib084G0513 Durio zibethinus HOM05D002107 ORTHO05D002067 5.2e-06 55.5 194 37.1
Gohir.D11G074300 Gossypium hirsutum HOM05D002107 ORTHO05D002067 5.2e-06 55.5 95 49.5
Manes.01G034900 Manihot esculenta HOM05D002107 ORTHO05D002067 5.2e-06 55.5 123 32.5
Nitab4.5_0000212g0050 Nicotiana tabacum HOM05D002107 ORTHO05D002067 5.2e-06 55.5 91 37.4
A09p03890 Brassica napus HOM05D002107 ORTHO05D002067 6.8e-06 55.1 95 37.9
BraA09t36026Z Brassica rapa HOM05D002107 ORTHO05D002067 6.8e-06 55.1 95 37.9
CiPaw.05G133300 Carya illinoinensis HOM05D002107 ORTHO05D002067 6.8e-06 55.1 166 27.1
Gohir.D04G191400 Gossypium hirsutum HOM05D002107 ORTHO05D002067 6.8e-06 55.1 114 32.5
Lsat_1_v5_gn_8_51200 Lactuca sativa HOM05D002107 ORTHO05D002067 6.8e-06 55.1 67 43.3
Psat3g200360 Pisum sativum HOM05D002107 ORTHO05D002067 6.8e-06 55.1 71 46.5
CANSAT64G0045 Cannabis sativa HOM05D002107 ORTHO05D002067 8.9e-06 54.7 159 29.6
CANSAT80G2282 Cannabis sativa HOM05D002107 ORTHO05D002067 8.9e-06 54.7 115 33.0
ClCG04G012200 Citrullus lanatus HOM05D002107 ORTHO05D002067 8.9e-06 54.7 109 43.1
Dinv16659 Davidia involucrata HOM05D002107 ORTHO05D002067 8.9e-06 54.7 108 35.2
Duzib205G1175 Durio zibethinus HOM05D002107 ORTHO05D002067 8.9e-06 54.7 200 36.0
Glyma.14G170400 Glycine max HOM05D002107 ORTHO05D002067 8.9e-06 54.7 167 29.9
HanXRQChr16g0503101 Helianthus annuus HOM05D002107 ORTHO05D002067 8.9e-06 54.7 66 36.4
Medtr7g011010 Medicago truncatula HOM05D002107 ORTHO05D002067 8.9e-06 54.7 92 47.8
PSO013G0121 Papaver somniferum HOM05D002107 ORTHO05D002067 8.9e-06 54.7 118 36.4
Potri.005G052800 Populus trichocarpa HOM05D000227 ORTHO05D000451 8.9e-06 54.7 141 31.9
THA.LOC104805475 Tarenaya hassleriana HOM05D002107 ORTHO05D002067 8.9e-06 54.7 96 38.5
Thecc.04G084400 Theobroma cacao HOM05D002107 ORTHO05D002067 8.9e-06 54.7 180 32.2
TWI75G1605 Tripterygium wilfordii HOM05D002107 ORTHO05D002067 8.9e-06 54.7 118 42.4


User provided reference genes

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