Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 2.4e-153 545.4 267 100.0
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 2.4e-153 545.4 267 100.0
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 5.9e-152 540.8 268 99.6
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 5.9e-152 540.8 268 99.6
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 7.7e-152 540.4 269 99.3
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 3.0e-140 501.9 269 90.3
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 7.4e-139 497.3 269 89.6
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 3.1e-137 491.9 266 87.2
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 3.5e-136 488.4 281 87.5
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 1.2e-115 420.2 220 92.3
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 8.9e-108 394.0 280 68.2
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 1.0e-103 380.6 196 90.3
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 2.3e-103 379.4 300 62.7
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 1.6e-101 373.2 304 60.9
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 8.9e-100 367.5 305 60.0
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.5e-99 366.7 304 59.2
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 1.5e-99 366.7 301 60.1
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 2.0e-99 366.3 301 60.1
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 2.0e-99 366.3 301 60.1
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 5.8e-99 364.8 306 58.8
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 1.3e-98 363.6 298 60.1
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 8.3e-98 360.9 304 58.2
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.5e-94 350.1 280 58.2
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 3.3e-94 349.0 308 57.1
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 4.3e-94 348.6 289 59.2
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 9.5e-94 347.4 293 57.0
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 2.8e-93 345.9 268 59.7
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 4.7e-93 345.1 269 60.2
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 5.2e-92 341.7 304 54.6
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 8.9e-92 340.9 291 55.7
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 1.5e-91 340.1 308 55.5
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 2.0e-91 339.7 308 55.8
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 4.4e-91 338.6 308 52.9
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 4.4e-91 338.6 290 56.6
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 7.6e-91 337.8 308 53.9
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 1.3e-90 337.0 289 56.4
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 1.7e-90 336.7 294 55.8
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 1.7e-90 336.7 308 53.6
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 2.9e-90 335.9 308 54.2
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 6.4e-90 334.7 308 52.6
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 6.4e-90 334.7 287 56.4
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 8.4e-90 334.3 304 54.3
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 8.4e-90 334.3 289 56.1
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 1.4e-89 333.6 304 54.3
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 3.2e-89 332.4 308 51.6
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 4.1e-89 332.0 305 53.1
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 5.4e-89 331.6 298 54.4
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 5.4e-89 331.6 291 55.0
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 9.2e-89 330.9 299 55.9
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 9.2e-89 330.9 309 52.4
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 1.6e-88 330.1 309 52.8
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 1.6e-88 330.1 294 56.1
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 1.6e-88 330.1 285 55.4
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 2.7e-88 329.3 293 56.0
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 2.7e-88 329.3 279 55.9
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 2.7e-88 329.3 309 53.4
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 3.5e-88 328.9 290 56.2
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 3.5e-88 328.9 309 52.8
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.6e-88 328.6 270 58.1
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 6.0e-88 328.2 270 57.8
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 7.8e-88 327.8 305 53.8
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 7.8e-88 327.8 300 53.3
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.8e-88 327.8 270 58.5
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.8e-88 327.8 270 58.5
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.8e-88 327.8 270 58.5
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 7.8e-88 327.8 279 57.7
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 7.8e-88 327.8 310 51.6
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 7.8e-88 327.8 293 54.9
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 1.3e-87 327.0 299 53.5
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.7e-87 326.6 305 52.5
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 1.7e-87 326.6 309 51.8
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 1.7e-87 326.6 270 58.5
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.7e-87 326.6 268 56.7
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 2.3e-87 326.2 308 52.6
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 3.0e-87 325.9 281 54.4
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 3.0e-87 325.9 308 52.3
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 3.0e-87 325.9 276 55.8
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 3.9e-87 325.5 287 55.7
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.9e-87 325.5 270 57.8
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 3.9e-87 325.5 268 56.7
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 5.1e-87 325.1 281 54.8
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 8.6e-87 324.3 270 57.4
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.5e-86 323.6 269 57.6
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.5e-86 323.6 269 57.6
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 1.9e-86 323.2 267 59.2
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 4.3e-86 322.0 307 51.5
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 4.3e-86 322.0 295 54.9
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 4.3e-86 322.0 294 54.1
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 4.3e-86 322.0 293 53.9
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 9.6e-86 320.9 310 51.0
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 9.6e-86 320.9 307 60.9
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 1.6e-85 320.1 288 53.5
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 1.6e-85 320.1 306 50.0
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 3.6e-85 318.9 303 51.5
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 4.7e-85 318.5 301 52.2
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 8.1e-85 317.8 302 51.0
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 1.1e-84 317.4 285 52.6
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 1.4e-84 317.0 303 51.5
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 1.8e-84 316.6 303 51.2
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 3.1e-84 315.8 302 50.7
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 4.0e-84 315.5 307 49.5
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 6.8e-84 314.7 306 49.7
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 1.2e-83 313.9 268 55.2
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 2.0e-83 313.2 307 48.9
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 2.6e-83 312.8 281 53.7
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 3.4e-83 312.4 306 49.3
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 4.4e-83 312.0 294 50.3
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 3.8e-82 308.9 218 64.2
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.9e-82 308.5 269 56.1
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 1.9e-81 306.6 303 49.5
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 3.2e-81 305.8 306 48.7
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 3.2e-81 305.8 294 50.3
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 4.2e-81 305.4 258 58.9
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 7.1e-81 304.7 317 46.7
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 9.6e-78 294.3 278 50.7
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.1e-77 293.1 218 61.5
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 6.2e-77 291.6 309 49.2
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 8.1e-77 291.2 288 50.0
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 2.6e-75 286.2 351 43.3
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 2.6e-75 286.2 254 53.5
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 3.2e-73 279.3 218 58.3
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 7.1e-73 278.1 298 45.3
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 2.3e-71 273.1 290 46.9
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.0e-71 272.7 213 56.8
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.6e-69 265.8 207 58.9
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 2.6e-67 259.6 308 45.1
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 2.9e-66 256.1 181 65.2
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 7.1e-65 251.5 307 44.6
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 1.9e-62 243.4 309 43.0
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 6.2e-61 238.4 311 41.2
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 1.7e-58 230.3 306 44.4
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.2e-56 224.2 213 50.2
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 1.5e-51 207.2 144 63.2
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 2.7e-48 196.4 149 59.1
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 5.9e-43 178.7 170 47.6
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 5.7e-30 135.6 214 37.4
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 1.1e-28 131.3 126 54.0
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.4e-28 131.0 71 84.5
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 1.6e-27 127.5 274 31.8
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 8.5e-26 121.7 159 44.0
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 1.9e-25 120.6 278 30.6
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 9.4e-25 118.2 153 41.2
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 6.1e-24 115.5 77 59.7
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 5.2e-23 112.5 306 28.4
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 4.4e-22 109.4 284 28.2
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 7.2e-17 92.0 50 78.0
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 5.2e-15 85.9 265 26.0
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 2.0e-14 84.0 281 28.1
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 9.8e-14 81.6 67 53.7
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 4.8e-13 79.3 59 55.9
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 6.5e-10 68.9 52 59.6
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 1.1e-09 68.2 274 28.1
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 3.2e-09 66.6 208 26.4
Pp3c8_2710 Physcomitrium patens HOM05D004773 ORTHO05D005943 3.6e-08 63.2 94 31.9
AL3G12640 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 8.8e-07 58.5 36 75.0
AL3G12680 Arabidopsis lyrata HOM05D000403 ORTHO05D000350 8.8e-07 58.5 36 75.0
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.6e-06 57.0 55 54.5
AL3G14120 Arabidopsis lyrata HOM05D000398 ORTHO05D079346 3.4e-06 56.6 41 65.9


User provided reference genes

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