Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p25220 Brassica napus HOM05D003376 ORTHO05D001185 0.0e+00 1337.8 682 100.0
A05p12450 Brassica napus HOM05D003376 ORTHO05D001185 0.0e+00 1288.1 680 96.9
A09p27420 Brassica napus HOM05D003376 ORTHO05D001185 0.0e+00 1094.7 583 95.7
Thhalv10001103m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.9e-272 941.8 680 71.2
BcaC06g35708 Brassica carinata HOM05D003376 ORTHO05D001185 1.6e-254 882.9 587 79.0
AL88U10020 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 9.5e-247 857.1 688 66.9
Thhalv10028343m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 5.0e-240 834.7 685 64.4
AL1G57140 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.1e-230 802.7 682 63.2
AL6G42760 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 3.2e-218 762.3 695 61.2
AL88U10010 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.1e-217 759.6 678 61.8
AL6G37690 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 2.6e-212 742.7 695 60.1
AL8G17310 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 5.8e-212 741.5 689 60.4
Thhalv10000496m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 5.6e-207 724.9 574 66.4
AL8G17320 Arabidopsis lyrata HOM05D003376 ORTHO05D001185 1.5e-204 716.8 617 63.7
A05p12400 Brassica napus HOM05D003376 ORTHO05D001185 5.8e-204 714.9 409 90.5
A04p12690 Brassica napus HOM05D003376 ORTHO05D001185 1.6e-201 706.8 501 77.2
BraA04t16927Z Brassica rapa HOM05D003376 ORTHO05D001185 1.6e-201 706.8 501 77.2
Thhalv10003417m.g Eutrema salsugineum HOM05D003376 ORTHO05D000048 4.5e-188 662.1 673 54.5
Thhalv10002934m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 4.2e-186 655.6 682 55.4
BcaB04g18321 Brassica carinata HOM05D003376 ORTHO05D001185 1.8e-168 597.0 474 67.5
C03p85050 Brassica napus HOM05D003376 ORTHO05D001185 2.0e-143 513.8 340 80.3
BcaB05g23142 Brassica carinata HOM05D003376 ORTHO05D001185 5.5e-138 495.7 397 67.8
BcaC09g49326 Brassica carinata HOM05D003376 ORTHO05D001185 5.5e-138 495.7 400 68.0
BraA06t26272Z Brassica rapa HOM05D003376 ORTHO05D001185 5.7e-135 485.7 453 64.5
C07p11790 Brassica napus HOM05D003376 ORTHO05D001185 6.3e-134 482.3 332 77.7
BcaB07g32859 Brassica carinata HOM05D003376 ORTHO05D001185 5.9e-124 449.1 384 64.6
BcaC02g10207 Brassica carinata HOM05D003376 ORTHO05D001185 7.8e-124 448.7 358 69.8
BcaB01g00899 Brassica carinata HOM05D003376 ORTHO05D001185 2.9e-118 430.3 336 68.8
C04p09000 Brassica napus HOM05D003376 ORTHO05D001185 8.0e-113 412.1 279 77.4
BolC4t22489H Brassica oleracea HOM05D003376 ORTHO05D001185 8.0e-113 412.1 279 77.4
A01p23930 Brassica napus HOM05D003376 ORTHO05D001185 3.5e-108 396.7 262 81.7
BraA01t02300Z Brassica rapa HOM05D003376 ORTHO05D001185 1.3e-107 394.8 262 81.3
BolC1t03750H Brassica oleracea HOM05D003376 ORTHO05D001185 6.2e-105 386.0 224 84.8
BolC1t03800H Brassica oleracea HOM05D003376 ORTHO05D001185 2.6e-103 380.6 281 73.0
BolC7t41653H Brassica oleracea HOM05D003376 ORTHO05D001185 6.6e-99 365.9 221 83.3
BolC4t24704H Brassica oleracea HOM05D003376 ORTHO05D001185 9.3e-93 345.5 249 73.5
BraA06t26274Z Brassica rapa HOM05D003376 ORTHO05D001185 1.0e-91 342.0 179 96.1
Thhalv10027218m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 4.8e-89 333.2 684 36.4
AL8G17340 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 1.6e-76 291.6 232 67.2
BcaB05g22757 Brassica carinata HOM05D003376 ORTHO05D001185 1.0e-75 288.9 220 70.0
BolC7t43332H Brassica oleracea HOM05D003376 ORTHO05D001185 1.0e-75 288.9 381 48.0
C07p27990 Brassica napus HOM05D003376 ORTHO05D001185 2.6e-71 274.2 430 44.4
BolC5t32825H Brassica oleracea HOM05D003376 ORTHO05D001185 5.1e-67 260.0 178 75.3
C05p40810 Brassica napus HOM05D003376 ORTHO05D001185 1.5e-66 258.5 178 75.3
Thhalv10000705m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.5e-66 257.7 682 31.7
Thhalv10012231m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 4.8e-65 253.4 666 29.6
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 6.9e-64 249.6 284 55.6
BcaC02g12005 Brassica carinata HOM05D003376 ORTHO05D001185 5.8e-63 246.5 141 86.5
Lj2g0007658 Lotus japonicus HOM05D005324 ORTHO05D001185 3.5e-60 237.3 688 29.7
Lj6g0018849 Lotus japonicus HOM05D005324 ORTHO05D001185 2.3e-59 234.6 688 29.4
Atru.chr7.181 Acer truncatum HOM05D005324 ORTHO05D001185 1.6e-57 228.4 691 29.8
BcaB01g00422 Brassica carinata HOM05D003376 ORTHO05D001185 1.1e-56 225.7 179 67.0
Thhalv10003477m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.5e-55 221.9 612 28.3
Thhalv10028344m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.5e-55 221.9 334 36.2
A09p25430 Brassica napus HOM05D003376 ORTHO05D001185 3.4e-55 220.7 114 98.2
C01p37900 Brassica napus HOM05D003376 ORTHO05D001185 5.9e-55 219.9 222 59.9
BolC1t03751H Brassica oleracea HOM05D003376 ORTHO05D001185 5.9e-55 219.9 222 59.9
HanXRQChr09g0262521 Helianthus annuus HOM05D003376 ORTHO05D001185 1.7e-54 218.4 700 28.9
Thhalv10023188m.g Eutrema salsugineum HOM05D003376 ORTHO05D000002 8.5e-54 216.1 463 30.2
HanXRQChr09g0262491 Helianthus annuus HOM05D003376 ORTHO05D001185 1.4e-53 215.3 703 28.9
HanXRQChr09g0267851 Helianthus annuus HOM05D003376 ORTHO05D001185 2.1e-52 211.5 702 28.8
HanXRQChr09g0262541 Helianthus annuus HOM05D003326 ORTHO05D001185 4.6e-52 210.3 703 28.4
HanXRQChr09g0262531 Helianthus annuus HOM05D003376 ORTHO05D001185 1.4e-51 208.8 668 28.9
A01p23920 Brassica napus HOM05D003376 ORTHO05D001185 2.3e-51 208.0 112 92.0
Cc00_g28290 Coffea canephora HOM05D003326 ORTHO05D001185 8.8e-51 206.1 714 29.0
Glyma.06G234900 Glycine max HOM05D005324 ORTHO05D001185 1.1e-50 205.7 607 28.0
HanXRQChr10g0281981 Helianthus annuus HOM05D003376 ORTHO05D001185 8.2e-49 199.5 681 28.3
Ca_11659_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.2e-46 191.4 332 35.8
Cc07_g21310 Coffea canephora HOM05D003376 ORTHO05D011089 2.2e-46 191.4 687 28.7
Atru.chr4.959 Acer truncatum HOM05D005324 ORTHO05D001185 5.0e-46 190.3 402 32.6
C04p31540 Brassica napus HOM05D003376 ORTHO05D001185 1.1e-45 189.1 112 85.7
BolC1t03801H Brassica oleracea HOM05D003376 ORTHO05D001185 6.1e-44 183.3 148 66.2
Ca_14742_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.1e-44 183.3 606 27.9
Atru.chr4.1769 Acer truncatum HOM05D005324 ORTHO05D001185 7.9e-44 183.0 285 35.4
HanXRQChr09g0262551 Helianthus annuus HOM05D003376 ORTHO05D001185 7.9e-44 183.0 581 28.4
Thhalv10002230m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.0e-43 182.6 295 34.9
BolC6t36227H Brassica oleracea HOM05D003376 ORTHO05D001185 2.6e-42 177.9 144 70.8
Thhalv10028029m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 2.6e-42 177.9 681 25.8
Glyma.19G076000 Glycine max HOM05D005324 ORTHO05D001185 8.2e-41 172.9 396 30.6
Atru.chr3.2329 Acer truncatum HOM05D003326 ORTHO05D001185 5.3e-40 170.2 535 27.9
BcaB05g23141 Brassica carinata HOM05D003376 ORTHO05D001185 9.1e-40 169.5 115 71.3
Ca_14156_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-39 169.1 660 25.6
BraA09t38518Z Brassica rapa HOM05D003376 ORTHO05D001185 3.5e-39 167.5 89 94.4
ECA246G2607 Erigeron canadensis HOM05D003326 ORTHO05D001185 2.2e-38 164.9 424 31.4
Ca_15184_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.0e-38 163.7 316 32.9
C04p31550 Brassica napus HOM05D003376 ORTHO05D001185 6.5e-38 163.3 105 80.0
BolC4t23955H Brassica oleracea HOM05D003376 ORTHO05D001185 1.1e-37 162.5 110 72.7
ECA236G2821 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.2e-36 159.1 409 28.6
BolC7t41652H Brassica oleracea HOM05D003376 ORTHO05D001185 4.7e-36 157.1 91 82.4
Atru.chr10.1416 Acer truncatum HOM05D005324 ORTHO05D001185 6.1e-36 156.8 261 32.6
Ca_14763_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.1e-36 156.8 310 33.5
Lj4g0014350 Lotus japonicus HOM05D005324 ORTHO05D001185 1.0e-35 156.0 379 26.6
ECA236G2931 Erigeron canadensis HOM05D003376 ORTHO05D001185 1.8e-35 155.2 424 30.0
AL8G17360 Arabidopsis lyrata HOM05D003376 ORTHO05D011035 3.0e-35 154.5 144 59.7
Ca_05672_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 5.2e-35 153.7 515 27.0
BcaC02g10208 Brassica carinata HOM05D003376 ORTHO05D001185 6.7e-35 153.3 89 83.1
Cc00_g09810 Coffea canephora HOM05D003326 ORTHO05D001185 8.8e-35 152.9 592 25.5
Ca_22549_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.4e-34 150.6 636 25.6
Cc00_g34090 Coffea canephora HOM05D005324 ORTHO05D001185 1.7e-33 148.7 438 28.1
ECA248G1318 Erigeron canadensis HOM05D003376 ORTHO05D001185 3.7e-33 147.5 279 33.3
Lj6g0006708 Lotus japonicus HOM05D005324 ORTHO05D001185 2.4e-32 144.8 687 24.9
Ca_13200_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-31 142.5 298 28.5
Ca_29875_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-31 142.5 298 28.5
Atru.chr3.3306 Acer truncatum HOM05D000477 ORTHO05D001185 2.0e-31 141.7 295 30.8
Atru.chr13.2462 Acer truncatum HOM05D005324 ORTHO05D001185 7.7e-31 139.8 224 30.8
Ca_25846_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.8e-30 137.5 649 23.6
BolC1t03802H Brassica oleracea HOM05D003376 ORTHO05D001185 6.5e-30 136.7 71 93.0
Atru.chr5.1825 Acer truncatum HOM05D005324 ORTHO05D001185 8.5e-30 136.3 178 37.6
Lj3g0011497 Lotus japonicus HOM05D005324 ORTHO05D001185 8.5e-30 136.3 278 27.0
Lj3g0022640 Lotus japonicus HOM05D005324 ORTHO05D001185 1.1e-29 136.0 268 28.7
Atru.chr9.334 Acer truncatum HOM05D005324 ORTHO05D001185 5.5e-29 133.7 159 38.4
BcaB05g24586 Brassica carinata HOM05D003376 ORTHO05D001185 3.0e-27 127.9 90 66.7
Lj4g0024804 Lotus japonicus HOM05D005324 ORTHO05D001185 8.8e-27 126.3 487 25.5
Atru.chr9.596 Acer truncatum HOM05D005324 ORTHO05D001185 1.2e-26 125.9 347 29.7
Ca_24087_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.2e-26 125.9 183 33.3
BcaB08g35327 Brassica carinata HOM05D003376 ORTHO05D001185 2.2e-25 121.7 90 64.4
BraA01t02207Z Brassica rapa HOM05D003376 ORTHO05D001185 8.3e-25 119.8 134 55.2
Atru.chr1.2264 Acer truncatum HOM05D005324 ORTHO05D001185 3.1e-24 117.9 291 30.6
Ca_24116_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.5e-23 114.4 591 23.5
COL.COLO4_29280 Corchorus olitorius HOM05D003376 ORTHO05D001185 5.9e-23 113.6 248 35.1
Thhalv10001272m.g Eutrema salsugineum HOM05D003376 ORTHO05D001185 1.0e-22 112.8 418 23.9
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.3e-22 112.5 518 26.6
BolC4t23953H Brassica oleracea HOM05D003376 ORTHO05D001185 3.8e-22 110.9 69 75.4
ECA234G2242 Erigeron canadensis HOM05D000088 ORTHO05D001030 9.4e-21 106.3 494 25.7
Glyma.11G180400 Glycine max HOM05D005324 ORTHO05D001185 1.2e-20 105.9 314 26.4
Ca_22528_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.7e-20 104.8 569 23.7
Lj6g0011364 Lotus japonicus HOM05D005324 ORTHO05D001185 4.7e-20 104.0 394 24.4
Ca_23895_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 8.0e-20 103.2 456 23.2
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 1.8e-19 102.1 214 31.3
Atru.chr1.2372 Acer truncatum HOM05D005324 ORTHO05D001185 4.0e-19 100.9 140 33.6
Ca_23845_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 4.0e-19 100.9 182 31.3
Ca_19239_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 7.5e-18 96.7 230 32.6
Lj1g0026229 Lotus japonicus HOM05D005324 ORTHO05D001185 7.5e-18 96.7 98 38.8
BolC4t23954H Brassica oleracea HOM05D003376 ORTHO05D001185 8.3e-17 93.2 64 76.6
AL6G41750 Arabidopsis lyrata HOM05D003376 ORTHO05D000002 1.0e-14 86.3 56 73.2
BcaB05g24045 Brassica carinata HOM05D003326 ORTHO05D001185 1.7e-14 85.5 110 44.5
Duzib084G0121 Durio zibethinus HOM05D028332 ORTHO05D029258 2.3e-14 85.1 172 36.0
Ca_04090_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.9e-13 82.0 657 22.4
Ca_05875_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.5e-13 81.6 410 22.7
Ca_14332_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 9.5e-13 79.7 160 36.9
Medtr3g436690 Medicago truncatula HOM05D005324 ORTHO05D001185 1.6e-12 79.0 103 36.9
Atru.chr4.2110 Acer truncatum HOM05D005324 ORTHO05D001185 4.7e-12 77.4 142 34.5
Cc00_g17730 Coffea canephora HOM05D003326 ORTHO05D001185 4.7e-12 77.4 466 24.2
A09p31910 Brassica napus HOM05D003376 ORTHO05D001185 6.1e-12 77.0 61 67.2
Ca_14697_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.4e-11 75.9 299 24.7
Ca_07874_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.5e-10 72.4 222 26.1
Ca_23844_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.5e-10 72.4 198 30.8
Ca_30746_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.5e-10 72.4 198 30.8
Ca_03092_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 2.0e-10 72.0 100 34.0
Carub.0002s1007 Capsella rubella HOM05D003376 ORTHO05D001185 1.3e-09 69.3 191 27.7
Ca_18104_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.7e-09 68.9 442 21.9
Ca_19340_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 6.4e-09 67.0 161 34.8
Ca_13202_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.2e-08 64.7 82 37.8
Ca_29877_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.2e-08 64.7 82 37.8
Medtr4g103910 Medicago truncatula HOM05D005324 ORTHO05D001185 5.4e-08 63.9 94 31.9
Ca_21962_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 3.5e-07 61.2 158 27.2
Cc04_g13130 Coffea canephora HOM05D003326 ORTHO05D001185 7.8e-07 60.1 403 25.1
Ca_11652_v3 Cicer arietinum L. HOM05D005324 ORTHO05D001185 1.0e-06 59.7 242 23.1
Cc00_g06960 Coffea canephora HOM05D003326 ORTHO05D001185 1.7e-06 58.9 171 26.9
Cc00_g26310 Coffea canephora HOM05D003326 ORTHO05D001185 2.3e-06 58.5 135 31.9
Cc04_g10970 Coffea canephora HOM05D003376 ORTHO05D001185 2.3e-06 58.5 76 39.5
Glyma.11G236000 Glycine max HOM05D005324 ORTHO05D001185 2.3e-06 58.5 113 32.7


User provided reference genes

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