Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 1.2e-103 379.8 178 100.0
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 5.9e-100 367.5 178 96.6
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 5.9e-100 367.5 178 96.6
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 5.9e-100 367.5 178 96.6
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 5.9e-100 367.5 178 96.6
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 2.4e-93 345.5 168 95.2
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 2.4e-93 345.5 168 95.2
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 5.4e-93 344.4 165 97.0
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 9.5e-90 333.6 159 96.9
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 9.5e-90 333.6 159 96.9
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 9.5e-90 333.6 159 96.9
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 9.5e-90 333.6 159 96.9
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 9.5e-90 333.6 159 96.9
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 1.0e-88 330.1 159 95.6
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 1.0e-88 330.1 159 96.2
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 3.1e-88 328.6 159 95.6
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.9e-86 322.0 180 83.3
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 8.3e-86 320.5 154 96.1
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 6.0e-84 314.3 167 86.8
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 6.0e-84 314.3 167 86.8
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 2.3e-83 312.4 159 89.9
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 8.6e-83 310.5 159 89.3
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 8.6e-83 310.5 159 89.3
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 1.1e-82 310.1 159 89.3
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 2.5e-82 308.9 159 88.7
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 5.6e-82 307.8 149 96.0
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 7.3e-82 307.4 159 87.4
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 9.5e-82 307.0 159 88.1
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 2.1e-81 305.8 159 87.4
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 2.8e-81 305.4 159 87.4
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 3.6e-81 305.1 159 86.2
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.7e-81 304.7 159 88.1
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 6.2e-81 304.3 159 87.4
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 6.2e-81 304.3 159 86.2
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 8.1e-81 303.9 161 85.1
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 8.1e-81 303.9 159 86.2
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 1.1e-80 303.5 159 86.2
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 1.1e-80 303.5 159 86.2
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 1.8e-80 302.8 159 86.8
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 3.1e-80 302.0 158 87.3
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 3.1e-80 302.0 159 84.3
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 4.0e-80 301.6 159 86.2
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 4.0e-80 301.6 159 86.2
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 4.0e-80 301.6 159 86.2
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 4.0e-80 301.6 159 86.2
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 4.0e-80 301.6 159 86.2
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 4.0e-80 301.6 159 86.2
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 4.0e-80 301.6 159 86.2
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 4.0e-80 301.6 159 86.2
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 4.0e-80 301.6 159 86.2
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 4.0e-80 301.6 159 86.2
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 4.0e-80 301.6 160 86.2
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 8.9e-80 300.4 159 84.3
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 8.9e-80 300.4 159 86.2
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 1.2e-79 300.1 169 82.8
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 1.2e-79 300.1 169 82.8
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 1.2e-79 300.1 169 82.8
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 3.4e-79 298.5 159 85.5
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 3.4e-79 298.5 161 84.5
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 4.4e-79 298.1 159 85.5
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 2.9e-78 295.4 159 88.1
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 3.7e-78 295.0 163 83.4
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 4.9e-78 294.7 162 82.7
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 8.3e-78 293.9 159 83.6
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 1.9e-77 292.7 159 83.0
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 7.1e-77 290.8 178 77.0
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 9.2e-77 290.4 168 83.3
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 2.7e-76 288.9 159 82.4
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 4.6e-76 288.1 157 85.4
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 7.8e-76 287.3 159 81.8
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 1.7e-75 286.2 168 78.6
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 1.2e-73 280.0 159 82.4
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 6.2e-73 277.7 148 87.2
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 1.8e-72 276.2 144 86.8
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 1.8e-72 276.2 144 86.8
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 1.8e-72 276.2 144 86.8
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 3.1e-72 275.4 142 88.7
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 4.4e-71 271.6 144 84.7
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 7.6e-71 270.8 159 81.8
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 2.9e-70 268.9 139 87.8
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.4e-69 265.8 139 86.3
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 4.1e-69 265.0 163 79.1
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 9.2e-69 263.8 159 76.1
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 9.2e-69 263.8 160 76.9
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 7.3e-66 254.2 159 76.7
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 2.1e-65 252.7 133 87.2
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 2.4e-64 249.2 144 81.2
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 7.6e-63 244.2 133 84.2
C02p28640 Brassica napus HOM05D001033 ORTHO05D004888 2.5e-58 229.2 107 97.2
BolC2t08910H Brassica oleracea HOM05D001033 ORTHO05D004888 2.5e-58 229.2 107 97.2
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.3e-57 226.9 151 72.8
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 6.2e-57 224.6 159 68.6
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 3.4e-55 218.8 139 72.7
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 3.4e-55 218.8 135 75.6
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 7.6e-55 217.6 132 75.8
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 9.9e-55 217.2 117 86.3
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 1.8e-51 206.5 136 74.3
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 1.5e-50 203.4 110 88.2
Duzib192G0593 Durio zibethinus HOM05D001033 ORTHO05D004888 1.5e-50 203.4 109 86.2
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 5.6e-50 201.4 133 73.7
Lj2C1237T30 Lonicera japonica HOM05D001033 ORTHO05D004888 9.6e-50 200.7 100 90.0
Lj2C1239T58 Lonicera japonica HOM05D001033 ORTHO05D004888 9.6e-50 200.7 100 90.0
Lj2C1239T8 Lonicera japonica HOM05D001033 ORTHO05D004888 9.6e-50 200.7 100 90.0
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 3.7e-49 198.7 171 62.0
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 3.7e-49 198.7 105 88.6
Gohir.A09G102850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.8e-49 198.4 101 88.1
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.4e-48 196.8 124 75.8
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.4e-48 196.8 160 61.2
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.4e-48 196.8 160 61.2
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.4e-48 196.8 160 61.2
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 2.2e-46 189.5 100 85.0
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 6.0e-44 181.4 105 79.0
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 7.9e-44 181.0 113 76.1
Nitab4.5_0005412g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.8e-43 179.9 111 74.8
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 1.8e-43 179.9 166 59.0
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 8.7e-43 177.6 112 75.0
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 2.5e-42 176.0 109 78.0
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 4.3e-42 175.3 89 92.1
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 1.3e-41 173.7 95 84.2
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 3.7e-41 172.2 115 69.6
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.4e-40 169.5 135 63.7
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 1.5e-39 166.8 109 72.5
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.6e-39 166.0 150 63.3
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 6.5e-38 161.4 90 78.9
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 1.4e-37 160.2 100 77.0
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 1.9e-37 159.8 92 80.4
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 3.0e-35 152.5 82 86.6
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 3.0e-35 152.5 84 82.1
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 5.1e-35 151.8 83 84.3
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 6.7e-35 151.4 83 84.3
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 1.1e-34 150.6 104 65.4
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 1.9e-34 149.8 83 83.1
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 2.5e-34 149.4 83 81.9
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 2.2e-33 146.4 83 80.7
CAN.G100.48 Capsicum annuum HOM05D001033 ORTHO05D004888 1.8e-32 143.3 78 82.1
Nitab4.5_0011099g0060 Nicotiana tabacum HOM05D001033 ORTHO05D004888 3.4e-31 139.0 78 82.1
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 7.6e-31 137.9 87 73.6
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.4e-29 133.7 85 75.3
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 2.5e-29 132.9 92 69.6
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 7.2e-29 131.3 72 84.7
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 9.3e-29 131.0 84 73.8
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 6.7e-27 124.8 124 53.2
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 8.8e-27 124.4 68 83.8
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.8e-25 118.6 68 79.4
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 6.3e-25 118.2 65 81.5
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.9e-21 106.7 57 84.2
TAR633G0438 Trochodendron aralioides HOM05D001033 ORTHO05D004888 1.9e-21 106.7 58 81.0
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.5e-21 106.3 69 69.6
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 4.2e-21 105.5 55 83.6
Lalb_Chr03g0030861 Lupinus albus HOM05D001033 ORTHO05D004888 1.2e-20 104.0 54 85.2
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 2.7e-20 102.8 53 88.7
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 2.7e-20 102.8 59 78.0
C09p29570 Brassica napus HOM05D001033 ORTHO05D004888 5.1e-19 98.6 43 100.0
Lalb_Chr23g0274161 Lupinus albus HOM05D001033 ORTHO05D004888 5.7e-18 95.1 53 77.4
Solyc01g056470.1 Solanum lycopersicum HOM05D000890 ORTHO05D004888 5.7e-18 95.1 57 78.9
TPR.G37622 Trifolium pratense HOM05D001033 ORTHO05D004888 5.7e-18 95.1 48 89.6
Phvul.005G068600 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 2.8e-17 92.8 86 50.0
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 1.9e-13 80.1 41 85.4
TAR338G0003 Trochodendron aralioides HOM05D001033 ORTHO05D004888 4.7e-12 75.5 40 82.5
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 3.3e-10 69.3 48 70.8
AUR62014217 Chenopodium quinoa HOM05D001033 ORTHO05D002045 1.8e-08 63.5 32 87.5
MELO3C034226.2 Cucumis melo HOM05D001033 ORTHO05D004888 9.1e-08 61.2 35 77.1
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 2.0e-07 60.1 91 31.9
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 7.7e-07 58.2 88 31.8
Nitab4.5_0007578g0070 Nicotiana tabacum HOM05D012508 ORTHO05D011743 7.7e-07 58.2 60 53.3
BolSC47t61120H Brassica oleracea HOM05D001033 ORTHO05D004888 5.0e-06 55.5 24 95.8
Lalb_Chr03g0030871 Lupinus albus HOM05D001033 ORTHO05D004888 6.5e-06 55.1 68 39.7


User provided reference genes

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