Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p22910 Brassica napus HOM05D001854 ORTHO05D021919 2.6e-59 231.9 120 100.0
BraA06t25392Z Brassica rapa HOM05D001854 ORTHO05D001800 3.3e-38 161.8 86 96.5
A10p15120 Brassica napus HOM05D001854 ORTHO05D001800 1.3e-26 123.2 78 79.5
BcaB08g36134 Brassica carinata HOM05D001854 ORTHO05D001800 1.7e-26 122.9 78 76.9
BcaC04g19933 Brassica carinata HOM05D001854 ORTHO05D001800 2.9e-26 122.1 78 78.2
C09p49610 Brassica napus HOM05D001854 ORTHO05D001800 2.9e-26 122.1 78 78.2
BolC9t57815H Brassica oleracea HOM05D001854 ORTHO05D001800 2.9e-26 122.1 78 78.2
BraA10t43595Z Brassica rapa HOM05D001854 ORTHO05D001800 2.9e-26 122.1 78 78.2
AL8G33780 Arabidopsis lyrata HOM05D001854 ORTHO05D001800 3.8e-26 121.7 78 78.2
AT5G57740 Arabidopsis thaliana HOM05D001854 ORTHO05D001800 6.5e-26 120.9 78 76.9
Sp6g19420 Schrenkiella parvula HOM05D001854 ORTHO05D001800 6.5e-26 120.9 78 75.6
Thhalv10013312m.g Eutrema salsugineum HOM05D001854 ORTHO05D001800 1.9e-25 119.4 78 75.6
Carub.0008s1825 Capsella rubella HOM05D001854 ORTHO05D001800 3.2e-25 118.6 78 75.6
C02p13930 Brassica napus HOM05D001854 ORTHO05D001800 4.2e-25 118.2 78 75.6
BolC2t07511H Brassica oleracea HOM05D001854 ORTHO05D001800 4.2e-25 118.2 78 75.6
BcaB05g22371 Brassica carinata HOM05D001854 ORTHO05D001800 1.6e-24 116.3 78 74.4
A02p08230 Brassica napus HOM05D001854 ORTHO05D001800 2.7e-24 115.5 78 75.6
CARHR271480 Cardamine hirsuta HOM05D001854 ORTHO05D001800 4.7e-24 114.8 79 74.7
BraA02t05895Z Brassica rapa HOM05D001854 ORTHO05D001800 1.4e-23 113.2 78 73.1
Aa31LG3G13570 Aethionema arabicum HOM05D001854 ORTHO05D001800 2.0e-22 109.4 82 69.5
THA.LOC104813534 Tarenaya hassleriana HOM05D001854 ORTHO05D001800 7.7e-19 97.4 81 60.5
Rhsim01G0012000 Rhododendron simsii HOM05D001854 ORTHO05D001800 1.0e-18 97.1 81 61.7
Duzib187G0707 Durio zibethinus HOM05D001854 ORTHO05D001800 1.5e-17 93.2 81 55.6
Gohir.A08G087200 Gossypium hirsutum HOM05D001854 ORTHO05D001800 2.5e-17 92.4 81 55.6
COL.COLO4_09216 Corchorus olitorius HOM05D001854 ORTHO05D001800 5.5e-17 91.3 81 54.3
Lj2A345T29 Lonicera japonica HOM05D001854 ORTHO05D001800 5.5e-17 91.3 81 55.6
Lj9A728T24 Lonicera japonica HOM05D001854 ORTHO05D001800 5.5e-17 91.3 81 55.6
Gorai.004G103100 Gossypium raimondii HOM05D001854 ORTHO05D001800 7.2e-17 90.9 82 57.3
Lalb_Chr12g0199081 Lupinus albus HOM05D001854 ORTHO05D001800 2.1e-16 89.4 79 58.2
Manes.06G024900 Manihot esculenta HOM05D001854 ORTHO05D001800 2.1e-16 89.4 81 54.3
Thecc.09G161600 Theobroma cacao HOM05D001854 ORTHO05D001800 2.1e-16 89.4 81 53.1
Peaxi162Scf00525g00818 Petunia axillaris HOM05D001854 ORTHO05D001800 2.7e-16 89.0 81 55.6
Oeu058828.1 Olea europaea HOM05D001854 ORTHO05D001800 3.6e-16 88.6 81 55.6
Cc06_g13970 Coffea canephora HOM05D001854 ORTHO05D001800 4.7e-16 88.2 81 55.6
Cc06_g13980 Coffea canephora HOM05D001854 ORTHO05D001800 4.7e-16 88.2 81 55.6
Glyma.13G091900 Glycine max HOM05D001854 ORTHO05D001800 6.1e-16 87.8 79 58.2
Gohir.D08G097000 Gossypium hirsutum HOM05D001854 ORTHO05D001800 1.4e-15 86.7 82 56.1
Nitab4.5_0010802g0020 Nicotiana tabacum HOM05D001854 ORTHO05D001800 1.4e-15 86.7 81 53.1
Solyc07g006350.3 Solanum lycopersicum HOM05D001854 ORTHO05D001800 1.4e-15 86.7 81 53.1
Sopen07g002440 Solanum pennellii HOM05D001854 ORTHO05D001800 1.4e-15 86.7 81 53.1
PGSC0003DMG400011225 Solanum tuberosum HOM05D001854 ORTHO05D001800 1.4e-15 86.7 81 53.1
Ciclev10008052m.g Citrus clementina HOM05D001854 ORTHO05D001800 1.8e-15 86.3 81 55.6
Glyma.17G068400 Glycine max HOM05D001854 ORTHO05D001800 3.0e-15 85.5 79 57.0
vmacro13074 Vaccinium macrocarpon HOM05D001854 ORTHO05D001800 3.0e-15 85.5 80 53.8
TPR.G5326 Trifolium pratense HOM05D001854 ORTHO05D001800 4.0e-15 85.1 79 53.2
Actinidia20958 Actinidia chinensis HOM05D001854 ORTHO05D001800 5.2e-15 84.7 81 51.9
Lj4g0003449 Lotus japonicus HOM05D001854 ORTHO05D001800 5.2e-15 84.7 79 54.4
Psat4g048200 Pisum sativum HOM05D001854 ORTHO05D001800 5.2e-15 84.7 79 54.4
CAN.G1870.4 Capsicum annuum HOM05D001854 ORTHO05D001800 6.8e-15 84.3 81 50.6
MSTRG.19676 Avicennia marina HOM05D001854 ORTHO05D001800 8.8e-15 84.0 81 54.3
BolC8t48022H Brassica oleracea HOM05D020879 ORTHO05D021919 8.8e-15 84.0 49 81.6
Potri.018G098400 Populus trichocarpa HOM05D001854 ORTHO05D001800 8.8e-15 84.0 81 55.6
Medtr4g129470 Medicago truncatula HOM05D001854 ORTHO05D001800 1.2e-14 83.6 79 53.2
PSO782G2637 Papaver somniferum HOM05D001854 ORTHO05D001800 1.2e-14 83.6 80 51.2
Phvul.003G150900 Phaseolus vulgaris HOM05D001854 ORTHO05D001800 1.2e-14 83.6 79 55.7
BcaC07g37650 Brassica carinata HOM05D020879 ORTHO05D021919 1.5e-14 83.2 49 81.6
Ca_21185_v3 Cicer arietinum L. HOM05D001854 ORTHO05D001800 1.5e-14 83.2 79 54.4
QL02p095690 Quercus lobata HOM05D001854 ORTHO05D001800 2.0e-14 82.8 81 50.6
SalBow6G7029 Salvia bowleyana HOM05D001854 ORTHO05D001800 2.0e-14 82.8 81 53.1
DCAR_020104 Daucus carota HOM05D001854 ORTHO05D001800 2.6e-14 82.4 81 56.8
Migut.J01419 Erythranthe guttata HOM05D001854 ORTHO05D001800 2.6e-14 82.4 81 49.4
Dinv41303 Davidia involucrata HOM05D001854 ORTHO05D001800 3.4e-14 82.0 81 50.6
Dinv42784 Davidia involucrata HOM05D001854 ORTHO05D001800 3.4e-14 82.0 81 50.6
Dinv43317 Davidia involucrata HOM05D001854 ORTHO05D001800 3.4e-14 82.0 81 50.6
FvH4_4g09590 Fragaria vesca HOM05D001854 ORTHO05D001800 3.4e-14 82.0 81 49.4
FAN07G1768 Fragaria x ananassa HOM05D001854 ORTHO05D001800 3.4e-14 82.0 81 49.4
FAN12G1469 Fragaria x ananassa HOM05D001854 ORTHO05D001800 3.4e-14 82.0 81 49.4
FAN12G2216 Fragaria x ananassa HOM05D001854 ORTHO05D001800 3.4e-14 82.0 81 49.4
Sabra18G0085200 Salix brachista HOM05D001854 ORTHO05D001800 3.4e-14 82.0 81 53.1
GSVIVG01023777001 Vitis vinifera HOM05D001854 ORTHO05D001800 3.4e-14 82.0 81 49.4
Atru.chr7.501 Acer truncatum HOM05D001854 ORTHO05D001800 4.4e-14 81.6 83 53.0
ClCG11G012590 Citrullus lanatus HOM05D001854 ORTHO05D001800 4.4e-14 81.6 81 54.3
Oeu039997.1 Olea europaea HOM05D001854 ORTHO05D001800 4.4e-14 81.6 76 53.9
PSO063G6940 Papaver somniferum HOM05D001854 ORTHO05D001800 4.4e-14 81.6 80 50.0
RcHm_v2.0_Chr4g0404891 Rosa chinensis HOM05D001854 ORTHO05D001800 4.4e-14 81.6 81 50.6
Hund26405 Selenicereus undatus HOM05D001854 ORTHO05D001800 4.4e-14 81.6 81 50.6
CSS0030333 Camellia sinensis var. sinensis HOM05D001854 ORTHO05D001800 5.7e-14 81.3 81 48.1
EL10Ac8g18866 Beta vulgaris HOM05D001854 ORTHO05D001800 7.5e-14 80.9 81 50.6
MELO3C004095.2 Cucumis melo HOM05D001854 ORTHO05D001800 7.5e-14 80.9 81 53.1
Hma1.2p1_0921F.1_g236860 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 7.5e-14 80.9 81 50.6
Sc14g0001100 Simmondsia chinensis HOM05D001854 ORTHO05D001800 7.5e-14 80.9 83 50.6
SGA_v2.0_scaffold69G23311 Striga asiatica HOM05D001854 ORTHO05D001800 9.8e-14 80.5 81 50.6
TAR416G0002 Trochodendron aralioides HOM05D001854 ORTHO05D001800 9.8e-14 80.5 81 48.1
Aqoxy7G03234 Aquilegia oxysepala HOM05D001854 ORTHO05D001800 1.3e-13 80.1 80 47.5
Migut.K00274 Erythranthe guttata HOM05D001854 ORTHO05D001800 1.3e-13 80.1 100 44.0
Zm00001eb192640 Zea mays HOM05D001854 ORTHO05D001800 1.3e-13 80.1 81 46.9
Manes.14G148400 Manihot esculenta HOM05D001854 ORTHO05D001800 1.7e-13 79.7 82 51.2
Potri.006G176600 Populus trichocarpa HOM05D001854 ORTHO05D001800 1.7e-13 79.7 81 53.1
Sabra06G0134800 Salix brachista HOM05D001854 ORTHO05D001800 1.7e-13 79.7 81 53.1
TWI34G1616 Tripterygium wilfordii HOM05D001854 ORTHO05D001800 1.7e-13 79.7 81 48.1
Cpa.g.sc75.17 Carica papaya HOM05D001854 ORTHO05D001800 2.2e-13 79.3 81 49.4
CsaV3_2G007900 Cucumis sativus L. HOM05D001854 ORTHO05D001800 2.2e-13 79.3 81 53.1
FAN17G2084 Fragaria x ananassa HOM05D001854 ORTHO05D001800 2.2e-13 79.3 81 49.4
FAN22G1229 Fragaria x ananassa HOM05D001854 ORTHO05D001800 2.2e-13 79.3 81 49.4
Hma1.2p1_0156F.1_g068740 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 2.2e-13 79.3 81 48.1
MD00G1085900 Malus domestica HOM05D001854 ORTHO05D001800 2.2e-13 79.3 81 46.9
SalBow1G8287 Salvia bowleyana HOM05D001854 ORTHO05D001800 2.2e-13 79.3 81 49.4
arahy.Tifrunner.gnm1.ann1.087C8T Arachis hypogaea HOM05D001854 ORTHO05D001800 2.8e-13 79.0 79 53.2
Eucgr.C01246 Eucalyptus grandis HOM05D001854 ORTHO05D001800 2.8e-13 79.0 81 49.4
Sed0020822 Sechium edule HOM05D001854 ORTHO05D001800 2.8e-13 79.0 81 51.9
MBI15_g34419_MAGBIO Magnolia biondii HOM05D001854 ORTHO05D001800 3.7e-13 78.6 81 45.7
Hund08989 Selenicereus undatus HOM05D001854 ORTHO05D001800 3.7e-13 78.6 81 51.9
CiPaw.08G040200 Carya illinoinensis HOM05D001854 ORTHO05D001800 4.8e-13 78.2 81 51.9
AUR62039965 Chenopodium quinoa HOM05D001854 ORTHO05D001800 4.8e-13 78.2 81 50.6
ClCG06G012910 Citrullus lanatus HOM05D001854 ORTHO05D001800 4.8e-13 78.2 81 48.1
Lsat_1_v5_gn_5_86980 Lactuca sativa HOM05D001854 ORTHO05D001800 4.8e-13 78.2 81 50.6
BcaC01g05757 Brassica carinata HOM05D038410 ORTHO05D001800 8.3e-13 77.4 47 74.5
Prupe.1G097200 Prunus persica HOM05D001854 ORTHO05D001800 8.3e-13 77.4 81 48.1
Sed0017956 Sechium edule HOM05D001854 ORTHO05D001800 8.3e-13 77.4 81 50.6
HanXRQChr10g0306451 Helianthus annuus HOM05D001854 ORTHO05D001800 1.1e-12 77.0 81 51.9
PGR102G2911 Punica granatum HOM05D001854 ORTHO05D001800 1.1e-12 77.0 81 50.6
VMungo1215G2523 Vigna mungo HOM05D001854 ORTHO05D001800 1.1e-12 77.0 79 51.9
Lalb_Chr13g0300521 Lupinus albus HOM05D001854 ORTHO05D001800 1.4e-12 76.6 79 50.6
Ah.09g229530 Amaranthus hybridus HOM05D001854 ORTHO05D001800 2.4e-12 75.9 81 49.4
Sed0019627 Sechium edule HOM05D001854 ORTHO05D001800 2.4e-12 75.9 81 46.9
MBI14_g08079_MAGBIO Magnolia biondii HOM05D001854 ORTHO05D001800 3.1e-12 75.5 81 44.4
Nn2g12565 Nelumbo nucifera HOM05D001854 ORTHO05D001800 3.1e-12 75.5 83 49.4
Nn8g40246 Nelumbo nucifera HOM05D001854 ORTHO05D001800 3.1e-12 75.5 81 49.4
AUR62039749 Chenopodium quinoa HOM05D001854 ORTHO05D001800 5.4e-12 74.7 81 49.4
Nitab4.5_0005985g0020 Nicotiana tabacum HOM05D001854 ORTHO05D001800 7.0e-12 74.3 105 41.0
CsaV3_1G029480 Cucumis sativus L. HOM05D001854 ORTHO05D001800 1.2e-11 73.6 82 45.1
ECA234G4451 Erigeron canadensis HOM05D001854 ORTHO05D001800 1.2e-11 73.6 81 48.1
A07p06780 Brassica napus HOM05D020879 ORTHO05D021919 1.6e-11 73.2 52 67.3
Cfa013545 Carpinus fangiana HOM05D001854 ORTHO05D001800 1.6e-11 73.2 81 45.7
Haze_22163 Corylus avellana HOM05D001854 ORTHO05D001800 1.6e-11 73.2 81 45.7
Os08g0258200 Oryza sativa ssp. japonica HOM05D001854 ORTHO05D001800 1.6e-11 73.2 81 44.4
MSTRG.10722 Avicennia marina HOM05D001854 ORTHO05D001800 3.5e-11 72.0 80 46.2
HanXRQChr10g0284081 Helianthus annuus HOM05D001854 ORTHO05D001800 3.5e-11 72.0 83 49.4
MD16G1262900 Malus domestica HOM05D001854 ORTHO05D001800 3.5e-11 72.0 81 43.2
MELO3C010168.2 Cucumis melo HOM05D001854 ORTHO05D001800 4.5e-11 71.6 82 43.9
SGA_v2.0_scaffold12G06043 Striga asiatica HOM05D001854 ORTHO05D001800 7.7e-11 70.9 81 45.7
HPP92_015855 Vanilla planifolia HOM05D001854 ORTHO05D001800 7.7e-11 70.9 82 43.9
CDE05G3532 Ceratophyllum demersum HOM05D001854 ORTHO05D001800 1.0e-10 70.5 81 46.9
Os02g0791200 Oryza sativa ssp. japonica HOM05D001854 ORTHO05D001800 1.0e-10 70.5 81 42.0
Zm00001eb178040 Zea mays HOM05D001854 ORTHO05D001800 1.3e-10 70.1 81 42.0
ECA236G1502 Erigeron canadensis HOM05D001854 ORTHO05D001800 2.9e-10 68.9 82 43.9
Lsat_1_v5_gn_8_65560 Lactuca sativa HOM05D001854 ORTHO05D001800 2.9e-10 68.9 83 44.6
unitig_899.g15468 Utricularia gibba HOM05D001854 ORTHO05D001800 1.1e-09 67.0 81 46.9
ATR0580G074 Amborella trichopoda HOM05D001854 ORTHO05D001800 5.5e-09 64.7 81 38.3
arahy.Tifrunner.gnm1.ann1.98ZYJR Arachis hypogaea HOM05D001854 ORTHO05D001800 5.5e-09 64.7 78 44.9
CANSAT11G0566 Cannabis sativa HOM05D001854 ORTHO05D001800 7.2e-09 64.3 81 43.2
Pp3c3_30370 Physcomitrium patens HOM05D001854 ORTHO05D001800 4.7e-08 61.6 102 40.2
Pp3c26_6440 Physcomitrium patens HOM05D001854 ORTHO05D001800 1.0e-07 60.5 102 37.3
AUR62025923 Chenopodium quinoa HOM05D001854 ORTHO05D001800 3.0e-07 58.9 44 61.4
Mapoly0046s0020 Marchantia polymorpha HOM05D001854 ORTHO05D001800 4.0e-07 58.5 83 36.1
Pp3c4_19240 Physcomitrium patens HOM05D001854 ORTHO05D001800 8.9e-07 57.4 102 38.2
Dinv28463 Davidia involucrata HOM05D001854 ORTHO05D001800 1.2e-06 57.0 96 36.5
Rhsim03G0178700 Rhododendron simsii HOM05D001854 ORTHO05D001800 1.2e-06 57.0 96 37.5
vmacro06703 Vaccinium macrocarpon HOM05D001854 ORTHO05D001800 2.0e-06 56.2 96 39.6
DCAR_018184 Daucus carota HOM05D001854 ORTHO05D001800 2.6e-06 55.8 96 39.6
SEGI_10691 Sequoiadendron giganteum HOM05D001854 ORTHO05D001800 2.6e-06 55.8 77 42.9
BcaC01g00660 Brassica carinata HOM05D020879 ORTHO05D091794 4.4e-06 55.1 36 72.2
Nn1g01393 Nelumbo nucifera HOM05D001854 ORTHO05D001800 4.4e-06 55.1 84 35.7
SalBow4G0409 Salvia bowleyana HOM05D001854 ORTHO05D001800 4.4e-06 55.1 93 33.3
QL09p014672 Quercus lobata HOM05D001854 ORTHO05D001800 5.7e-06 54.7 84 36.9
TAR629G2266 Trochodendron aralioides HOM05D001854 ORTHO05D001800 5.7e-06 54.7 96 34.4
GSVIVG01010599001 Vitis vinifera HOM05D001854 ORTHO05D001800 5.7e-06 54.7 96 34.4
arahy.Tifrunner.gnm1.ann1.PE6B8R Arachis hypogaea HOM05D001854 ORTHO05D001800 7.5e-06 54.3 46 56.5
Migut.F00360 Erythranthe guttata HOM05D001854 ORTHO05D001800 7.5e-06 54.3 95 34.7
Oeu022577.1 Olea europaea HOM05D001854 ORTHO05D001800 7.5e-06 54.3 93 36.6
Phvul.007G067600 Phaseolus vulgaris HOM05D001854 ORTHO05D001800 7.5e-06 54.3 84 36.9
SGA_v2.0_scaffold2G01069 Striga asiatica HOM05D001854 ORTHO05D001800 7.5e-06 54.3 84 38.1
VMungo0720G1081 Vigna mungo HOM05D001854 ORTHO05D001800 7.5e-06 54.3 84 36.9
CSS0027493 Camellia sinensis var. sinensis HOM05D001854 ORTHO05D001800 9.8e-06 53.9 96 35.4
CSS0031976 Camellia sinensis var. sinensis HOM05D001854 ORTHO05D001800 9.8e-06 53.9 96 35.4
CiPaw.04G066100 Carya illinoinensis HOM05D001854 ORTHO05D001800 9.8e-06 53.9 84 36.9
Lalb_Chr01g0009201 Lupinus albus HOM05D001854 ORTHO05D001800 9.8e-06 53.9 96 33.3
Nn6g34212 Nelumbo nucifera HOM05D001854 ORTHO05D001800 9.8e-06 53.9 84 36.9
PSO478G1241 Papaver somniferum HOM05D001854 ORTHO05D001800 9.8e-06 53.9 96 34.4
PGSC0003DMG400014280 Solanum tuberosum HOM05D001854 ORTHO05D001800 9.8e-06 53.9 96 35.4


User provided reference genes

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