Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 0.0e+00 1092.8 564 100.0
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 0.0e+00 1085.5 564 99.1
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 4.2e-309 1063.9 564 97.7
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 4.2e-309 1063.9 564 97.7
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 2.7e-308 1061.2 564 97.3
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 4.5e-295 1017.3 568 93.1
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 1.2e-292 1009.2 567 92.2
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 1.6e-292 1008.8 567 92.2
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 2.8e-289 998.0 565 91.2
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 8.3e-289 996.5 565 90.6
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 2.0e-287 991.9 565 90.1
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 1.0e-286 989.6 567 89.9
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 2.9e-286 988.0 568 90.3
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 3.4e-282 974.5 565 89.7
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 9.2e-280 966.5 565 88.1
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 1.3e-273 946.0 547 89.2
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 1.2e-268 929.5 568 83.1
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 9.6e-245 850.1 550 77.3
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 4.7e-244 847.8 558 75.6
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 1.4e-243 846.3 549 77.4
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 2.4e-243 845.5 554 76.2
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 4.0e-243 844.7 560 76.2
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 5.2e-243 844.3 567 76.5
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 6.9e-243 844.0 552 74.8
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 6.9e-243 844.0 567 76.0
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 9.0e-243 843.6 558 75.4
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.2e-242 843.2 558 75.3
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 7.6e-242 840.5 552 75.4
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 1.3e-241 839.7 554 76.4
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.2e-241 839.0 565 75.6
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.9e-241 838.6 554 76.2
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 2.9e-241 838.6 552 76.8
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 6.4e-241 837.4 570 74.4
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 1.6e-239 832.8 551 76.6
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 6.0e-239 830.9 552 76.4
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 5.6e-237 824.3 567 73.9
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 5.6e-237 824.3 564 73.0
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 1.6e-236 822.8 570 72.5
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 2.1e-236 822.4 622 68.2
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 2.1e-236 822.4 567 72.7
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 2.1e-236 822.4 561 74.2
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 2.8e-236 822.0 558 73.7
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 4.8e-236 821.2 552 75.0
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 8.1e-236 820.5 563 73.7
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 2.4e-235 818.9 560 73.0
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 6.9e-235 817.4 555 73.7
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 6.9e-235 817.4 560 73.6
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 9.0e-235 817.0 565 72.6
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 3.4e-234 815.1 551 74.0
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 4.5e-234 814.7 560 73.6
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 7.6e-234 813.9 567 72.5
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 7.6e-234 813.9 552 74.1
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.7e-233 812.8 551 73.5
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 4.9e-233 811.2 549 73.4
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 4.9e-233 811.2 564 71.3
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 6.4e-233 810.8 567 73.0
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 8.4e-233 810.4 567 72.0
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 8.4e-233 810.4 549 73.4
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 1.4e-232 809.7 581 70.7
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 1.9e-232 809.3 561 72.2
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.9e-232 809.3 552 73.0
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 9.3e-232 807.0 550 73.5
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 2.1e-231 805.8 575 71.8
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 2.7e-231 805.4 565 71.0
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 4.6e-231 804.7 555 73.0
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 6.0e-231 804.3 554 72.7
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 1.8e-230 802.7 557 71.5
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.3e-230 802.4 554 72.6
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 3.9e-230 801.6 558 72.0
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 2.5e-229 798.9 560 71.2
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 9.6e-229 797.0 552 73.4
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 1.3e-228 796.6 549 72.9
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 2.1e-228 795.8 560 71.2
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 2.8e-228 795.4 529 73.9
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 2.8e-228 795.4 552 73.2
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.1e-227 793.5 557 71.6
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 1.5e-226 789.6 555 71.2
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 2.0e-226 789.3 551 72.1
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 2.6e-226 788.9 562 71.7
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 3.4e-226 788.5 551 72.1
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 3.4e-226 788.5 554 71.5
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 5.8e-226 787.7 541 74.1
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 5.8e-226 787.7 568 71.0
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.2e-225 785.8 559 72.1
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 6.4e-225 784.3 548 73.2
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 8.4e-225 783.9 550 72.5
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 1.4e-224 783.1 550 72.5
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 1.9e-224 782.7 555 70.8
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 2.4e-224 782.3 580 68.8
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 4.2e-224 781.6 557 71.6
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 4.2e-224 781.6 563 71.6
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 5.5e-224 781.2 550 71.6
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 5.5e-224 781.2 571 69.2
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 1.6e-223 779.6 553 70.9
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 2.3e-222 775.8 601 67.7
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 6.7e-222 774.2 593 67.6
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 1.1e-221 773.5 557 71.6
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 1.9e-221 772.7 547 70.0
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 1.9e-221 772.7 545 71.7
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 1.1e-219 766.9 552 71.0
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 5.3e-219 764.6 614 66.4
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 3.4e-218 761.9 550 68.9
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 4.9e-217 758.1 552 71.0
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 1.4e-216 756.5 597 66.3
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 2.1e-215 752.7 563 68.0
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 7.9e-215 750.7 535 69.3
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 7.9e-215 750.7 546 67.6
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 2.2e-212 742.7 519 71.1
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 6.3e-212 741.1 530 71.1
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 3.4e-210 735.3 556 68.0
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 1.3e-209 733.4 560 66.4
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 1.6e-207 726.5 636 61.6
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 1.3e-206 723.4 550 68.7
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 3.9e-206 721.8 407 91.2
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 4.3e-205 718.4 407 90.9
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 2.8e-204 715.7 558 65.6
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 4.8e-204 714.9 547 64.9
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 6.9e-203 711.1 404 90.6
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 5.5e-200 701.4 577 62.4
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 8.8e-198 694.1 470 73.8
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 7.7e-194 681.0 442 76.9
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 3.6e-191 672.2 556 62.9
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 1.3e-185 653.7 498 63.5
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.9e-185 652.5 475 68.8
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 2.9e-185 652.5 552 59.1
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 2.3e-182 642.9 473 68.9
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 1.4e-179 633.6 540 59.1
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 4.2e-176 622.1 551 58.8
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 2.3e-161 573.2 414 69.6
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 1.6e-154 550.4 359 78.3
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 3.0e-145 519.6 364 70.3
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 5.8e-141 505.4 541 48.6
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 1.1e-136 491.1 526 47.5
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 1.5e-125 454.1 332 69.0
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 2.0e-117 427.2 269 78.1
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 2.5e-112 410.2 337 63.5
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 4.8e-95 352.8 220 76.4
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 1.8e-78 297.7 195 71.8
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.0e-72 277.7 200 74.5
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 9.4e-59 232.3 176 65.9
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 5.5e-51 206.5 174 63.8
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 7.8e-45 186.0 152 61.8
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 6.1e-42 176.4 147 61.9
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 5.2e-41 173.3 117 69.2
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 4.1e-38 163.7 189 51.3
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 2.3e-28 131.3 107 68.2
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 1.4e-22 112.1 95 58.9
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 4.1e-22 110.5 83 67.5
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.6e-21 108.6 80 58.8
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 6.0e-21 106.7 127 46.5
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 1.7e-20 105.1 82 65.9
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 6.6e-20 103.2 93 52.7
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 2.9e-07 61.2 55 52.7
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 6.4e-07 60.1 298 25.5


User provided reference genes

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