Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 5.4e-69 264.2 136 100.0
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 5.4e-69 264.2 136 100.0
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 2.7e-68 261.9 136 98.5
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 2.7e-68 261.9 136 98.5
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 2.7e-68 261.9 136 98.5
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 4.6e-68 261.2 136 97.8
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 3.9e-67 258.1 136 96.3
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 6.6e-67 257.3 136 96.3
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 4.4e-63 244.6 136 92.6
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 1.2e-60 236.5 136 89.7
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 1.2e-60 236.5 136 89.7
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 6.0e-60 234.2 136 89.7
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 1.3e-59 233.0 136 89.7
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 1.7e-59 232.6 136 90.4
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 2.3e-59 232.3 136 88.2
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 2.0e-55 219.2 136 85.3
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 6.4e-54 214.2 136 80.9
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 3.9e-51 204.9 119 83.2
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 6.6e-51 204.1 119 84.0
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 8.7e-51 203.8 123 82.1
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 1.1e-50 203.4 123 82.1
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 1.9e-50 202.6 126 79.4
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 1.9e-50 202.6 119 83.2
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 1.9e-50 202.6 127 77.2
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 2.5e-50 202.2 117 82.9
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 2.5e-50 202.2 130 79.2
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 2.5e-50 202.2 119 81.5
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 2.5e-50 202.2 127 79.5
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 4.3e-50 201.4 119 82.4
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 5.6e-50 201.1 117 83.8
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 5.6e-50 201.1 119 81.5
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 5.6e-50 201.1 117 82.9
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 7.3e-50 200.7 122 78.7
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 9.6e-50 200.3 117 81.2
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 1.3e-49 199.9 126 77.0
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 1.6e-49 199.5 122 79.5
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 2.1e-49 199.1 119 80.7
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 2.8e-49 198.7 134 81.3
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 2.8e-49 198.7 117 82.9
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 2.8e-49 198.7 119 79.8
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 2.8e-49 198.7 119 79.8
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 3.6e-49 198.4 117 80.3
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 4.8e-49 198.0 117 82.9
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 4.8e-49 198.0 117 82.1
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 6.2e-49 197.6 124 78.2
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 8.1e-49 197.2 119 81.5
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.1e-48 196.8 121 80.2
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 1.4e-48 196.4 119 78.2
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 1.4e-48 196.4 126 77.8
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 1.8e-48 196.1 133 73.7
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 1.8e-48 196.1 117 82.1
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.8e-48 196.1 119 77.3
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 2.4e-48 195.7 117 82.1
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 3.1e-48 195.3 119 79.0
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 6.9e-48 194.1 121 76.0
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 6.9e-48 194.1 119 78.2
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 6.9e-48 194.1 119 78.2
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 9.0e-48 193.7 134 73.1
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.2e-47 193.4 124 77.4
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 1.5e-47 193.0 121 76.0
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.0e-47 192.6 117 78.6
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 2.0e-47 192.6 119 76.5
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.0e-47 192.6 124 76.6
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 2.6e-47 192.2 124 73.4
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 3.4e-47 191.8 140 70.0
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 3.4e-47 191.8 122 78.7
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 5.8e-47 191.0 121 78.5
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 5.8e-47 191.0 123 74.0
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 7.6e-47 190.7 128 71.1
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.7e-46 189.5 119 78.2
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 2.2e-46 189.1 130 73.1
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.2e-46 189.1 124 72.6
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 2.9e-46 188.7 127 72.4
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 3.8e-46 188.3 125 74.4
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 3.8e-46 188.3 119 77.3
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 4.9e-46 188.0 125 75.2
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 4.9e-46 188.0 130 72.3
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 6.4e-46 187.6 125 74.4
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.1e-45 186.8 119 74.8
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 1.4e-45 186.4 125 74.4
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 1.4e-45 186.4 117 78.6
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 1.9e-45 186.0 131 67.2
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 2.4e-45 185.7 119 74.8
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 3.2e-45 185.3 117 75.2
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 3.2e-45 185.3 121 74.4
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 3.2e-45 185.3 138 68.1
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 9.3e-45 183.7 117 74.4
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 9.3e-45 183.7 125 72.8
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.6e-44 183.0 120 74.2
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 1.6e-44 183.0 119 73.9
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 4.6e-44 181.4 121 71.9
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 6.0e-44 181.0 121 71.1
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 7.9e-44 180.6 124 75.0
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 7.9e-44 180.6 124 73.4
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 7.9e-44 180.6 126 69.0
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 1.0e-43 180.3 125 72.8
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 1.0e-43 180.3 105 83.8
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.8e-43 179.5 105 81.0
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 1.8e-43 179.5 119 74.8
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 5.6e-42 174.5 108 78.7
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 7.4e-42 174.1 126 69.0
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.6e-41 172.9 136 73.5
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.6e-41 172.9 136 73.5
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 3.7e-41 171.8 122 70.5
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 1.1e-40 170.2 119 67.2
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 4.0e-40 168.3 98 85.7
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 5.3e-40 167.9 99 83.8
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 1.2e-39 166.8 122 68.9
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 1.5e-39 166.4 120 70.0
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 2.6e-39 165.6 117 67.5
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 4.5e-39 164.9 110 74.5
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 5.8e-39 164.5 103 74.8
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 9.9e-39 163.7 120 69.2
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 1.3e-38 163.3 127 66.9
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 6.4e-38 161.0 98 79.6
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 2.4e-37 159.1 98 78.6
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 3.2e-37 158.7 96 80.2
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 1.2e-36 156.8 127 65.4
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 6.0e-36 154.5 90 77.8
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 3.9e-35 151.8 95 80.0
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 6.7e-35 151.0 107 68.2
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 1.9e-34 149.4 127 61.4
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 3.7e-33 145.2 119 64.7
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 1.8e-32 142.9 126 60.3
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 9.0e-32 140.6 125 59.2
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 1.5e-31 139.8 100 66.0
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 2.0e-31 139.4 96 69.8
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 2.6e-31 139.0 86 76.7
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 1.0e-30 137.1 84 76.2
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 3.2e-29 132.1 84 73.8
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 4.2e-29 131.7 119 55.5
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 7.1e-29 131.0 107 60.7
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.2e-28 130.2 117 59.0
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.6e-28 129.8 102 64.7
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 1.3e-27 126.7 79 72.2
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 1.8e-27 126.3 117 52.1
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 6.7e-27 124.4 84 72.6
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 1.9e-26 122.9 116 57.8
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 4.3e-26 121.7 112 53.6
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 9.7e-26 120.6 125 55.2
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 1.6e-25 119.8 114 57.0
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 1.6e-25 119.8 111 53.2
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 4.8e-25 118.2 88 59.1
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 8.2e-25 117.5 118 52.5
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 1.1e-24 117.1 113 50.4
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 1.4e-24 116.7 117 50.4
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 5.3e-24 114.8 115 53.0
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 9.0e-24 114.0 113 49.6
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 4.5e-23 111.7 129 48.8
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.0e-22 110.5 103 54.4
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 3.2e-21 105.5 131 44.3
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 9.4e-21 104.0 76 72.4
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 9.4e-21 104.0 61 82.0
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 3.1e-16 89.0 53 75.5
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 9.7e-10 67.4 77 46.8
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 8.2e-09 64.3 35 88.6
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 7.0e-08 61.2 53 50.9
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 1.3e-06 57.0 111 37.8
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 2.9e-06 55.8 111 34.2
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 3.8e-06 55.5 111 35.1
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 8.5e-06 54.3 111 36.0


User provided reference genes

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