Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 2.4e-220 768.5 375 100.0
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 2.7e-219 765.0 375 99.5
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 5.8e-214 747.3 375 96.5
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 1.3e-213 746.1 375 96.5
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 1.3e-213 746.1 375 96.5
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 3.4e-198 694.9 378 90.7
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 1.6e-192 676.0 378 88.4
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 4.5e-190 667.9 374 88.0
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 3.0e-186 655.2 377 86.2
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 1.9e-185 652.5 378 85.4
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 7.9e-179 630.6 373 84.2
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 1.8e-170 602.8 387 76.2
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 4.1e-167 591.7 308 93.2
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 2.6e-153 545.8 383 70.0
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 6.8e-146 521.2 345 72.8
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 6.8e-146 521.2 366 68.0
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 2.0e-145 519.6 338 73.1
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 3.4e-145 518.8 377 67.1
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 4.8e-144 515.0 350 70.6
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.8e-143 513.1 359 68.8
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 1.8e-143 513.1 371 69.0
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 1.8e-143 513.1 382 67.0
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 9.1e-143 510.8 385 65.2
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 1.2e-142 510.4 353 69.4
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 1.6e-142 510.0 357 68.3
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 4.5e-142 508.4 364 67.0
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 4.5e-142 508.4 379 66.0
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 1.7e-141 506.5 384 65.4
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 2.9e-141 505.8 370 65.1
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 3.8e-141 505.4 377 66.3
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 8.6e-141 504.2 359 69.1
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 1.5e-140 503.4 382 66.8
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 3.3e-140 502.3 355 68.5
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 5.5e-140 501.5 360 67.2
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 5.5e-140 501.5 357 66.9
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 9.5e-140 500.7 361 66.5
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 9.5e-140 500.7 352 66.2
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.2e-139 500.4 349 69.6
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 1.2e-139 500.4 378 63.5
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 1.2e-139 500.4 357 67.5
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.6e-139 500.0 353 67.4
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 2.8e-139 499.2 380 65.5
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 2.8e-139 499.2 355 67.3
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 4.7e-139 498.4 360 66.9
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 6.1e-139 498.0 359 69.1
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 1.0e-138 497.3 352 68.5
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 2.3e-138 496.1 360 66.1
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 3.0e-138 495.7 374 63.1
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 5.2e-138 495.0 340 68.2
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 6.8e-138 494.6 354 68.1
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 1.5e-137 493.4 351 67.0
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 2.6e-137 492.7 357 66.1
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 4.4e-137 491.9 359 67.4
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 7.5e-137 491.1 345 68.1
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 7.5e-137 491.1 360 66.9
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.3e-136 490.3 348 69.0
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 2.2e-136 489.6 370 63.8
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 2.8e-136 489.2 348 69.0
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 2.8e-136 489.2 339 69.3
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 2.8e-136 489.2 370 65.4
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 1.8e-135 486.5 365 64.4
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 2.4e-135 486.1 375 65.3
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 7.0e-135 484.6 351 65.5
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.2e-134 483.8 370 64.3
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 2.0e-134 483.0 338 68.0
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 2.7e-134 482.6 354 66.1
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.5e-134 482.3 343 67.6
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 4.5e-134 481.9 356 66.3
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 4.5e-134 481.9 376 62.5
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.5e-134 481.9 362 65.5
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 5.9e-134 481.5 374 64.2
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 5.9e-134 481.5 374 64.2
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 8.6e-133 477.6 358 65.4
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 8.6e-133 477.6 372 63.7
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 1.5e-132 476.9 346 65.6
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 1.5e-132 476.9 354 63.0
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.9e-132 476.5 381 61.7
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 4.3e-132 475.3 387 62.0
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 1.6e-131 473.4 346 65.3
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 2.1e-131 473.0 360 65.3
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 2.8e-131 472.6 347 66.9
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 2.8e-131 472.6 357 65.8
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 3.6e-131 472.2 373 62.5
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 4.7e-131 471.9 386 61.7
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 4.7e-131 471.9 373 61.9
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 1.0e-130 470.7 346 65.0
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 1.0e-130 470.7 438 56.2
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 1.5e-129 466.8 335 66.3
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 7.5e-129 464.5 343 65.0
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 4.9e-128 461.8 338 65.4
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 6.4e-128 461.5 356 61.0
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 1.4e-127 460.3 360 60.0
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 1.9e-127 459.9 391 60.4
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 7.0e-127 458.0 330 66.4
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 1.9e-124 449.9 341 63.6
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 5.6e-124 448.4 373 60.3
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 1.8e-122 443.4 361 62.0
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.0e-121 439.9 387 58.9
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 2.6e-121 439.5 360 59.2
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 3.4e-121 439.1 351 59.8
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 5.4e-119 431.8 355 60.3
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 7.8e-118 427.9 373 58.2
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 1.3e-117 427.2 406 54.4
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 3.0e-117 426.0 349 62.8
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.9e-116 423.3 358 60.3
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 4.3e-116 422.2 303 67.7
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.2e-115 420.6 337 60.5
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 8.1e-115 417.9 378 56.6
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.3e-114 416.4 372 57.0
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 1.7e-112 410.2 362 56.6
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 2.2e-112 409.8 372 57.3
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 6.4e-112 408.3 230 86.1
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 8.3e-112 407.9 301 65.4
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 1.1e-111 407.5 381 56.7
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 2.4e-111 406.4 322 60.2
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 4.1e-111 405.6 370 56.8
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 5.4e-111 405.2 361 57.1
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 9.2e-111 404.4 577 41.6
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.0e-109 401.0 506 46.0
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 2.3e-109 399.8 343 60.9
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 7.3e-108 394.8 374 54.3
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.8e-107 392.9 386 55.4
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 2.2e-104 383.3 405 52.3
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.4e-103 378.6 347 57.3
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 3.9e-101 372.5 269 65.4
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 3.4e-97 359.4 248 69.8
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 2.7e-94 349.7 370 49.2
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 1.0e-93 347.8 388 46.1
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 1.7e-93 347.1 240 69.6
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 1.1e-92 344.4 294 59.2
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 4.3e-92 342.4 376 48.9
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 4.0e-90 335.9 340 52.9
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 3.4e-89 332.8 275 60.0
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 4.9e-88 328.9 238 65.5
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 1.4e-87 327.4 232 66.4
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 2.4e-82 310.1 343 48.1
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 9.6e-76 288.1 279 55.2
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 4.0e-74 282.7 185 74.1
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 3.2e-71 273.1 199 67.8
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 1.0e-69 268.1 361 42.9
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 6.7e-69 265.4 517 33.7
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 2.0e-65 253.8 344 43.6
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 9.4e-55 218.4 191 51.8
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 1.1e-52 211.5 256 46.5
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 1.3e-51 208.0 297 39.4
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 2.0e-41 174.1 395 33.9
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.3e-40 171.4 172 52.3
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 1.2e-38 164.9 332 30.1
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 6.1e-38 162.5 302 33.1
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 4.0e-37 159.8 135 63.0
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.0e-28 131.0 114 54.4
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 2.4e-26 124.0 93 65.6
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 3.4e-20 103.6 81 64.2
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 3.9e-16 90.1 56 67.9
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 2.1e-14 84.3 44 84.1
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 3.6e-14 83.6 63 58.7
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 4.4e-12 76.6 43 81.4
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 1.2e-09 68.6 131 37.4
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 2.3e-08 64.3 43 58.1


User provided reference genes

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