Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 0.0e+00 1501.1 805 100.0
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 0.0e+00 1476.5 805 98.3
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 0.0e+00 1456.0 821 96.0
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 0.0e+00 1452.2 848 93.6
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 0.0e+00 1415.2 805 93.7
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 0.0e+00 1404.4 805 92.9
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 0.0e+00 1381.7 805 91.6
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 0.0e+00 1377.5 805 91.1
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 0.0e+00 1372.1 803 91.4
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 0.0e+00 1365.1 805 90.8
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 0.0e+00 1345.9 801 89.0
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 0.0e+00 1241.5 802 82.5
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 0.0e+00 1236.1 805 84.5
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 6.9e-305 1050.4 819 67.9
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 8.4e-303 1043.5 819 67.4
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 4.2e-302 1041.2 819 67.0
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 4.2e-302 1041.2 815 66.9
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 1.1e-299 1033.1 821 66.9
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 4.3e-299 1031.2 821 66.6
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 5.6e-299 1030.8 821 66.4
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 6.2e-298 1027.3 818 66.5
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 6.2e-298 1027.3 823 66.6
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 1.1e-297 1026.5 817 67.7
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 1.4e-297 1026.2 824 66.7
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 1.4e-297 1026.2 817 66.2
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 7.1e-294 1013.8 856 64.8
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 3.5e-293 1011.5 816 67.2
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 5.1e-292 1007.7 821 66.1
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 1.9e-291 1005.7 819 65.2
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 1.6e-290 1002.7 819 65.2
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 4.1e-289 998.0 820 65.2
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 9.0e-289 996.9 819 64.7
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.2e-288 996.5 819 65.1
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 1.5e-288 996.1 819 65.1
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 8.5e-287 990.3 822 65.1
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 2.1e-285 985.7 808 66.5
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 2.1e-285 985.7 821 65.2
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 2.7e-285 985.3 821 64.3
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 4.6e-285 984.6 821 64.3
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 2.3e-284 982.2 826 63.9
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 7.4e-283 977.2 785 66.2
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 1.6e-282 976.1 817 64.9
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 1.1e-281 973.4 822 64.1
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 1.1e-281 973.4 819 64.6
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 9.0e-281 970.3 821 64.4
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 1.2e-280 969.9 819 64.6
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 2.6e-280 968.8 819 63.1
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 3.8e-279 964.9 815 64.3
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.4e-278 963.0 822 62.8
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 1.4e-278 963.0 843 62.0
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 1.4e-278 963.0 881 61.5
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 1.9e-278 962.6 821 63.7
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 4.2e-278 961.4 813 62.4
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 5.1e-276 954.5 819 63.7
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 1.5e-275 953.0 787 65.2
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 4.4e-275 951.4 819 62.3
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 7.4e-275 950.7 818 63.1
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 2.2e-274 949.1 820 61.8
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 2.2e-274 949.1 824 62.5
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 3.7e-274 948.3 820 62.1
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 1.1e-273 946.8 813 61.7
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 1.8e-273 946.0 813 61.6
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 4.5e-272 941.4 819 62.0
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 6.5e-271 937.6 819 61.8
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 8.5e-271 937.2 828 61.5
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 1.1e-270 936.8 819 62.1
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 1.4e-270 936.4 821 61.9
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 5.5e-270 934.5 745 66.8
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 7.2e-270 934.1 845 60.0
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 2.1e-269 932.6 829 62.5
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 2.1e-269 932.6 820 61.5
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 3.9e-268 928.3 814 62.5
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 2.6e-264 915.6 822 60.3
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 3.5e-264 915.2 816 60.9
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 2.2e-263 912.5 841 60.0
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 2.9e-263 912.1 816 61.0
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 1.0e-260 903.7 807 61.2
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 3.0e-260 902.1 816 60.2
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 1.7e-258 896.3 530 93.8
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 2.8e-258 895.6 822 60.5
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 1.1e-257 893.6 745 64.0
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 2.9e-255 885.6 821 59.6
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 3.8e-255 885.2 817 59.5
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 5.5e-254 881.3 832 59.7
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 9.4e-254 880.6 857 57.5
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 1.6e-253 879.8 754 63.1
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 2.7e-253 879.0 925 55.6
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 3.6e-253 878.6 809 59.1
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 1.6e-248 863.2 817 59.0
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 1.3e-239 833.6 817 56.2
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 8.6e-239 830.9 821 55.8
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 3.5e-224 782.3 818 57.1
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 2.1e-221 773.1 820 54.3
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 4.0e-220 768.8 685 62.2
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 2.7e-208 729.6 862 49.7
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 8.4e-202 708.0 662 59.2
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 6.0e-184 648.7 594 59.4
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 5.1e-167 592.4 465 75.7
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 9.7e-166 588.2 827 43.5
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 4.8e-165 585.9 750 45.6
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 6.3e-165 585.5 779 43.4
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 2.5e-161 573.5 622 53.9
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 7.0e-140 502.3 862 38.1
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 2.0e-139 500.7 810 38.9
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 3.8e-138 496.5 831 39.0
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.5e-137 494.6 379 66.2
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 2.7e-136 490.3 324 75.3
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 2.8e-133 480.3 316 84.2
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 7.0e-124 449.1 492 52.6
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 5.8e-118 429.5 405 58.8
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.5e-102 378.3 269 68.0
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 6.4e-101 372.9 255 72.9
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 2.3e-90 337.8 275 59.6
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 3.5e-75 287.3 241 65.6
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 5.0e-53 213.8 797 25.3
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 1.6e-51 208.8 119 92.4
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 5.0e-45 187.2 354 38.1
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 5.7e-41 173.7 828 22.7
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 3.1e-39 167.9 122 73.0
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 7.0e-39 166.8 163 54.0
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 7.7e-38 163.3 220 43.6
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 7.7e-30 136.7 93 67.7
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 2.5e-28 131.7 101 68.3
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 4.4e-25 120.9 235 37.0
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.0e-21 109.8 69 82.6
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 1.7e-21 109.0 111 50.5
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 4.2e-20 104.4 70 67.1
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 4.2e-20 104.4 70 67.1
Aa31LG4G15080 Aethionema arabicum HOM05D005589 ORTHO05D006948 1.2e-19 102.8 235 39.1
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 4.7e-19 100.9 69 65.2
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.2e-17 96.3 141 41.8
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 7.0e-15 87.0 86 51.2
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 2.0e-14 85.5 61 73.8
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 8.6e-13 80.1 69 62.3
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 1.8e-10 72.4 129 36.4
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 3.7e-08 64.7 47 70.2
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 2.7e-06 58.5 67 47.8


User provided reference genes

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