Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 0.0e+00 1309.3 649 100.0
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 0.0e+00 1287.3 660 97.3
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 0.0e+00 1278.5 649 97.7
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 0.0e+00 1271.9 649 97.5
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 0.0e+00 1267.7 660 95.9
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 0.0e+00 1218.8 652 93.3
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 0.0e+00 1195.6 648 91.7
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 0.0e+00 1170.6 652 89.6
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 0.0e+00 1169.5 648 89.8
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 0.0e+00 1164.8 648 89.5
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 0.0e+00 1152.9 648 89.2
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 0.0e+00 1150.2 648 88.4
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 0.0e+00 1117.4 648 85.6
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 7.5e-294 1013.4 651 76.2
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 2.0e-254 882.5 650 68.2
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 6.4e-253 877.5 651 66.8
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 1.4e-252 876.3 648 66.4
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 3.2e-252 875.2 649 66.4
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 7.9e-251 870.5 651 66.1
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 1.8e-250 869.4 651 66.7
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 3.3e-249 865.1 647 67.5
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 2.8e-248 862.1 651 64.7
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 3.7e-248 861.7 645 65.0
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 3.7e-248 861.7 647 64.5
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 4.0e-247 858.2 649 64.9
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.9e-244 849.4 644 63.5
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 3.2e-244 848.6 654 64.5
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 7.1e-244 847.4 675 64.1
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 6.7e-242 840.9 654 64.4
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 4.3e-241 838.2 648 63.7
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 1.1e-236 823.5 653 62.5
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 2.5e-236 822.4 655 61.7
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 3.0e-234 815.5 652 63.5
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 3.0e-234 815.5 652 63.5
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.9e-233 812.8 651 62.7
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 8.2e-232 807.4 651 61.1
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 1.8e-231 806.2 655 60.8
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 9.0e-231 803.9 647 62.1
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 1.3e-229 800.0 656 61.9
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 2.2e-229 799.3 649 60.7
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 6.5e-229 797.7 646 60.5
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 8.5e-229 797.3 652 61.5
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 4.2e-228 795.0 613 62.8
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 1.6e-227 793.1 643 62.1
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 3.0e-226 788.9 650 61.1
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 1.1e-225 786.9 647 59.7
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 1.1e-225 786.9 653 61.1
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 2.0e-225 786.2 648 59.3
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 2.0e-225 786.2 648 59.3
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 3.3e-225 785.4 646 60.8
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 4.3e-225 785.0 656 59.3
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 9.7e-225 783.9 648 61.4
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 1.7e-224 783.1 651 60.5
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 8.2e-224 780.8 653 59.3
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 1.4e-223 780.0 641 62.6
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 1.8e-223 779.6 656 61.3
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 6.9e-223 777.7 630 62.9
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 2.0e-222 776.2 648 60.2
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 2.9e-221 772.3 648 59.7
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 1.4e-220 770.0 657 59.5
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 2.7e-219 765.8 655 59.4
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 2.7e-219 765.8 650 59.5
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 4.7e-219 765.0 648 59.1
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 4.7e-219 765.0 649 59.9
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 6.1e-219 764.6 648 59.4
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.4e-218 763.5 649 59.6
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 3.0e-218 762.3 618 62.1
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 3.9e-218 761.9 648 60.3
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 5.1e-218 761.5 641 59.9
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 1.5e-217 760.0 655 59.4
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 7.4e-217 757.7 654 58.9
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 2.2e-216 756.1 649 60.4
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 1.4e-215 753.4 539 68.6
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 4.1e-215 751.9 616 61.9
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 7.0e-215 751.1 655 59.5
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 1.0e-213 747.3 647 58.3
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 1.9e-212 743.0 648 58.8
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 2.5e-212 742.7 655 56.9
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 1.4e-210 736.9 657 57.1
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 1.5e-204 716.8 671 55.7
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 1.2e-201 707.2 648 55.7
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 8.3e-200 701.0 651 53.8
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 1.1e-199 700.7 648 55.9
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 1.1e-196 690.6 647 55.2
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 1.3e-192 677.2 643 54.6
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 1.2e-185 654.1 573 56.9
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.3e-176 624.0 596 52.0
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 7.8e-174 614.8 676 49.6
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 8.9e-170 601.3 505 60.2
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 1.1e-164 584.3 495 58.2
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.3e-160 570.9 621 51.7
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 6.0e-158 562.0 578 53.3
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 2.7e-150 536.6 660 45.9
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 9.6e-148 528.1 657 45.4
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.8e-138 497.3 642 45.5
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 5.3e-138 495.7 594 46.1
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 6.4e-136 488.8 626 44.1
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 3.2e-135 486.5 475 53.1
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 6.9e-122 442.2 254 81.9
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 1.2e-121 441.4 539 47.1
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 2.5e-111 407.1 389 53.7
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 2.2e-99 367.5 634 37.5
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 1.7e-96 357.8 359 51.5
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 5.7e-92 342.8 345 51.6
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 8.2e-91 339.0 482 40.5
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 1.8e-90 337.8 178 86.5
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 1.6e-89 334.7 296 58.8
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 2.2e-80 304.3 429 41.7
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 2.2e-75 287.7 197 71.1
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 1.0e-61 242.3 278 44.6
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 6.8e-53 213.0 167 64.7
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 7.5e-52 209.5 103 92.2
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 4.9e-51 206.8 106 88.7
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 6.4e-51 206.5 216 47.2
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 3.1e-37 161.0 498 30.1
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 8.4e-35 152.9 137 59.1
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 7.1e-34 149.8 200 40.5
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 9.3e-34 149.4 184 47.3
BcaB01g00966 Brassica carinata HOM05D006000 ORTHO05D007749 1.2e-28 132.5 148 57.4
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 1.4e-26 125.6 85 70.6
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 9.3e-26 122.9 58 89.7
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 1.6e-25 122.1 76 77.6
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.5e-23 115.5 83 66.3
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 4.3e-23 114.0 154 44.2
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 2.4e-18 98.2 95 49.5
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 1.1e-15 89.4 44 84.1
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 1.3e-14 85.9 76 56.6
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 2.1e-14 85.1 74 58.1
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 2.8e-14 84.7 74 56.8
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 6.2e-14 83.6 74 59.5
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 1.4e-13 82.4 74 55.4
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 9.0e-13 79.7 74 55.4
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 6.0e-09 67.0 59 55.9
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 1.0e-08 66.2 59 54.2
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 2.3e-08 65.1 96 45.8
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 1.9e-07 62.0 87 46.0


User provided reference genes

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