Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 4.8e-43 177.6 98 100.0
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 4.8e-43 177.6 98 100.0
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 4.1e-42 174.5 98 96.9
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 4.2e-39 164.5 96 91.7
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 2.1e-38 162.2 98 90.8
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 5.1e-37 157.5 98 87.8
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 2.0e-36 155.6 100 88.0
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 2.5e-36 155.2 99 87.9
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 3.3e-36 154.8 97 87.6
CARHR158580 Cardamine hirsuta HOM05D003381 ORTHO05D003880 3.8e-32 141.4 98 79.6
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.4e-29 132.9 90 80.0
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 3.0e-29 131.7 83 88.0
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 3.9e-29 131.3 89 77.5
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 6.7e-29 130.6 90 75.6
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 6.7e-29 130.6 90 75.6
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 6.7e-29 130.6 90 75.6
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 8.8e-29 130.2 89 76.4
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 8.8e-29 130.2 90 76.7
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 8.8e-29 130.2 90 76.7
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.5e-28 129.4 89 75.3
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 2.0e-28 129.0 90 77.8
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 2.6e-28 128.6 89 75.3
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 5.7e-28 127.5 90 78.9
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 5.7e-28 127.5 88 75.0
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 5.7e-28 127.5 90 74.4
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 1.3e-27 126.3 90 73.3
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 1.3e-27 126.3 90 77.8
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 1.7e-27 125.9 89 75.3
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 2.8e-27 125.2 85 78.8
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 2.8e-27 125.2 90 74.4
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.8e-26 122.5 89 71.9
AL6G36260 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 2.4e-26 122.1 90 71.1
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 9.1e-26 120.2 89 74.2
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 1.2e-25 119.8 89 74.2
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 1.2e-25 119.8 89 74.2
BcaC09g49963 Brassica carinata HOM05D003381 ORTHO05D003880 2.0e-25 119.0 70 94.3
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 2.6e-25 118.6 89 73.0
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 2.2e-24 115.5 89 73.0
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 3.8e-24 114.8 81 77.8
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 3.8e-24 114.8 81 77.8
Aa31LG4G18060 Aethionema arabicum HOM05D003381 ORTHO05D003880 4.2e-23 111.3 94 69.1
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 6.7e-21 104.0 76 72.4
A02p40150 Brassica napus HOM05D003381 ORTHO05D003880 2.4e-18 95.5 68 77.9
AT3G49580 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.7e-16 89.4 70 71.4
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 1.2e-12 76.6 93 52.7
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 1.5e-12 76.3 78 59.0
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 2.0e-12 75.9 87 51.7
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.0e-12 75.9 80 56.2
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 2.6e-12 75.5 88 54.5
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 4.4e-12 74.7 96 51.0
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 7.5e-12 73.9 78 55.1
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 7.5e-12 73.9 78 55.1
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 7.5e-12 73.9 93 51.6
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 7.5e-12 73.9 90 53.3
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 9.8e-12 73.6 80 56.2
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 1.3e-11 73.2 93 48.4
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.7e-11 72.8 93 51.6
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 1.7e-11 72.8 80 55.0
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 1.7e-11 72.8 79 53.2
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 2.8e-11 72.0 75 56.0
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 3.7e-11 71.6 88 52.3
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 4.8e-11 71.2 88 51.1
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 1.1e-10 70.1 94 45.7
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 1.1e-10 70.1 79 54.4
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 1.1e-10 70.1 79 54.4
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 1.8e-10 69.3 103 45.6
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.4e-10 68.9 83 53.0
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 3.1e-10 68.6 73 56.2
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 3.1e-10 68.6 78 48.7
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 3.1e-10 68.6 80 56.2
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 4.1e-10 68.2 93 52.7
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 4.1e-10 68.2 106 45.3
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 4.1e-10 68.2 99 45.5
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 4.1e-10 68.2 77 53.2
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 5.4e-10 67.8 86 50.0
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 7.0e-10 67.4 93 48.4
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 7.0e-10 67.4 73 54.8
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 7.0e-10 67.4 90 50.0
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 7.0e-10 67.4 75 54.7
Zm00001eb231110 Zea mays HOM05D003381 ORTHO05D003880 7.0e-10 67.4 79 49.4
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 9.1e-10 67.0 82 50.0
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 9.1e-10 67.0 82 48.8
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 1.6e-09 66.2 72 54.2
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 1.6e-09 66.2 84 48.8
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 2.0e-09 65.9 74 51.4
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 2.0e-09 65.9 98 48.0
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.7e-09 65.5 93 49.5
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 3.5e-09 65.1 82 47.6
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 3.5e-09 65.1 75 52.0
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 3.5e-09 65.1 75 48.0
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 3.5e-09 65.1 93 48.4
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 3.5e-09 65.1 76 50.0
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 3.5e-09 65.1 80 52.5
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 4.5e-09 64.7 89 48.3
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 4.5e-09 64.7 80 52.5
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 4.5e-09 64.7 80 52.5
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 5.9e-09 64.3 81 46.9
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 5.9e-09 64.3 73 49.3
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 7.7e-09 63.9 88 45.5
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 7.7e-09 63.9 80 55.0
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 7.7e-09 63.9 92 48.9
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 1.0e-08 63.5 84 48.8
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 1.0e-08 63.5 74 50.0
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 1.3e-08 63.2 73 54.8
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 1.3e-08 63.2 79 48.1
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 1.3e-08 63.2 68 51.5
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 1.7e-08 62.8 80 50.0
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.7e-08 62.8 76 50.0
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.7e-08 62.8 75 52.0
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 2.2e-08 62.4 79 49.4
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 2.2e-08 62.4 95 44.2
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.2e-08 62.4 86 50.0
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 2.2e-08 62.4 79 50.6
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 2.9e-08 62.0 90 48.9
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 2.9e-08 62.0 53 60.4
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.9e-08 62.0 80 50.0
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 2.9e-08 62.0 73 53.4
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 3.8e-08 61.6 79 49.4
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 3.8e-08 61.6 79 49.4
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 3.8e-08 61.6 85 45.9
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.8e-08 61.6 86 50.0
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.8e-08 61.6 83 50.6
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 3.8e-08 61.6 83 50.6
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 5.0e-08 61.2 52 59.6
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 5.0e-08 61.2 74 50.0
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 6.5e-08 60.8 74 50.0
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 8.5e-08 60.5 82 47.6
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 8.5e-08 60.5 80 48.8
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 8.5e-08 60.5 75 50.7
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.1e-07 60.1 79 48.1
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 1.5e-07 59.7 79 48.1
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.5e-07 59.7 73 49.3
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 1.9e-07 59.3 86 47.7
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 1.9e-07 59.3 81 50.6
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 1.9e-07 59.3 83 45.8
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 1.9e-07 59.3 79 51.9
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 2.5e-07 58.9 75 48.0
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.5e-07 58.9 96 45.8
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 4.2e-07 58.2 84 46.4
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 4.2e-07 58.2 74 48.6
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 4.2e-07 58.2 80 50.0
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 5.5e-07 57.8 95 44.2
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 5.5e-07 57.8 76 48.7
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 5.5e-07 57.8 74 47.3
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 7.2e-07 57.4 78 44.9
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 7.2e-07 57.4 75 46.7
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 9.4e-07 57.0 77 49.4
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 9.4e-07 57.0 59 50.8
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.2e-06 56.6 78 44.9
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 1.2e-06 56.6 84 45.2
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 1.2e-06 56.6 74 47.3
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 1.2e-06 56.6 79 44.3
Os02g0129800 Oryza sativa ssp. japonica HOM05D003381 ORTHO05D003880 1.6e-06 56.2 81 45.7
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.6e-06 56.2 69 53.6
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 2.7e-06 55.5 82 41.5
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 2.7e-06 55.5 52 57.7
CiPaw.06G038100 Carya illinoinensis HOM05D003381 ORTHO05D003880 3.6e-06 55.1 93 45.2
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 3.6e-06 55.1 98 40.8
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 3.6e-06 55.1 90 43.3
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 6.1e-06 54.3 82 41.5
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 6.1e-06 54.3 77 46.8
SEGI_09109 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 8.0e-06 53.9 81 43.2
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 8.0e-06 53.9 78 46.2


User provided reference genes

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