Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 2.1e-109 399.1 205 100.0
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 2.8e-109 398.7 205 99.5
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 2.9e-106 388.7 205 98.0
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 2.9e-106 388.7 205 98.0
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 2.9e-106 388.7 205 98.0
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 8.3e-106 387.1 205 97.6
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 3.6e-93 345.1 205 86.8
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 3.6e-93 345.1 205 86.8
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 4.0e-92 341.7 206 87.9
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 1.2e-91 340.1 205 85.9
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 1.2e-91 340.1 205 85.9
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 1.2e-91 340.1 205 85.9
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 2.9e-90 335.5 203 88.2
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 3.8e-90 335.1 210 87.1
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 3.2e-89 332.0 207 87.0
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 4.2e-89 331.6 208 86.5
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 1.5e-86 323.2 210 83.8
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 2.5e-86 322.4 188 86.2
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 8.1e-85 317.4 211 83.4
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 1.4e-84 316.6 209 84.7
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 1.4e-84 316.6 209 84.7
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 1.8e-84 316.2 209 84.2
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 1.8e-84 316.2 209 84.2
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 1.8e-84 316.2 209 84.2
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 1.7e-82 309.7 205 83.9
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 7.2e-49 198.0 212 55.7
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 3.7e-45 185.7 217 54.8
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 5.5e-41 171.8 213 50.7
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 1.0e-39 167.5 215 49.3
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 1.4e-39 167.2 211 49.3
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 1.8e-39 166.8 217 51.2
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 3.0e-39 166.0 213 50.2
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 3.9e-39 165.6 206 48.5
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 8.8e-39 164.5 226 49.1
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.7e-38 161.8 209 49.8
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 5.7e-38 161.8 209 49.8
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 2.2e-37 159.8 221 48.0
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.1e-36 157.5 215 46.5
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.4e-36 157.1 202 47.5
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.4e-36 156.4 209 48.3
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 7.0e-36 154.8 171 57.9
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 7.0e-36 154.8 212 47.2
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 7.0e-36 154.8 234 41.5
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 7.0e-36 154.8 202 49.0
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 2.6e-35 152.9 219 48.4
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 3.5e-35 152.5 236 43.6
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 3.5e-35 152.5 217 43.3
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 5.9e-35 151.8 176 52.3
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 1.0e-34 151.0 208 47.6
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 1.3e-34 150.6 212 43.9
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 1.7e-34 150.2 201 46.8
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.7e-34 150.2 206 47.1
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 5.0e-34 148.7 228 46.1
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.5e-33 146.4 212 44.8
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 2.5e-33 146.4 217 44.7
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 4.2e-33 145.6 206 46.1
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 4.2e-33 145.6 199 46.7
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 5.5e-33 145.2 220 43.2
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 7.2e-33 144.8 199 46.2
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 7.2e-33 144.8 220 43.6
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 7.2e-33 144.8 212 47.2
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 7.2e-33 144.8 208 44.7
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 7.2e-33 144.8 219 43.8
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 9.4e-33 144.4 199 46.2
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 9.4e-33 144.4 222 43.7
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 1.2e-32 144.1 202 46.5
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 1.2e-32 144.1 206 45.6
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 1.2e-32 144.1 206 45.1
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 1.2e-32 144.1 213 46.5
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 1.6e-32 143.7 214 44.9
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 1.6e-32 143.7 214 44.9
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.6e-32 143.7 212 43.9
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.6e-32 143.7 212 44.3
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 2.1e-32 143.3 208 44.2
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 2.7e-32 142.9 212 45.8
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 6.1e-32 141.7 200 48.0
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 8.0e-32 141.4 198 46.0
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 8.0e-32 141.4 224 43.8
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.4e-31 140.6 222 43.2
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.3e-31 139.8 199 45.2
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 6.7e-31 138.3 208 44.2
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 1.5e-30 137.1 221 43.9
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 2.0e-30 136.7 195 48.7
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 2.0e-30 136.7 224 43.8
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 2.6e-30 136.3 191 44.5
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 5.7e-30 135.2 222 45.0
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 7.5e-30 134.8 225 43.6
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 9.7e-30 134.4 215 44.7
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 1.3e-29 134.0 224 42.4
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 4.8e-29 132.1 204 44.6
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 6.3e-29 131.7 211 41.2
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 8.2e-29 131.3 235 43.4
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.8e-28 130.2 184 44.6
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 1.8e-28 130.2 211 40.8
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 2.4e-28 129.8 223 43.0
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 2.4e-28 129.8 214 41.6
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 1.2e-27 127.5 208 40.4
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.6e-27 127.1 223 41.3
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 1.6e-27 127.1 211 43.1
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 3.5e-27 125.9 210 44.3
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 4.5e-27 125.6 179 44.7
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 4.5e-27 125.6 250 39.2
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 4.5e-27 125.6 229 41.0
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.0e-26 124.4 191 42.4
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 1.3e-26 124.0 225 39.1
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.7e-26 123.6 214 41.1
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.7e-26 123.6 180 40.6
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.7e-26 123.6 193 45.1
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 1.7e-26 123.6 211 42.7
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 2.9e-26 122.9 182 43.4
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 8.5e-26 121.3 222 39.6
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 1.1e-25 120.9 233 40.3
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 1.5e-25 120.6 209 40.2
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 3.2e-25 119.4 225 39.6
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 7.2e-25 118.2 175 46.3
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 7.2e-25 118.2 216 38.4
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 9.4e-25 117.9 175 45.7
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 1.2e-24 117.5 192 41.7
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 2.1e-24 116.7 187 41.2
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 2.7e-24 116.3 160 43.8
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 3.6e-24 115.9 195 41.0
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 8.0e-24 114.8 239 40.6
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 1.0e-23 114.4 198 42.9
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 1.4e-23 114.0 224 39.3
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 1.4e-23 114.0 209 40.7
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 1.2e-22 110.9 246 39.0
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 1.5e-22 110.5 149 47.7
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 2.0e-22 110.2 215 37.7
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 9.8e-22 107.8 200 37.5
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 1.3e-21 107.5 202 42.1
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 4.8e-21 105.5 251 34.7
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 4.8e-21 105.5 192 38.5
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.8e-20 103.6 177 40.7
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 9.1e-20 101.3 119 52.1
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 9.1e-20 101.3 171 36.8
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.2e-19 100.9 163 40.5
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.6e-19 100.5 163 40.5
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 2.7e-19 99.8 210 37.1
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 4.5e-19 99.0 152 45.4
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 7.7e-19 98.2 178 35.4
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 7.7e-19 98.2 196 36.7
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 2.3e-18 96.7 176 40.9
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 6.5e-18 95.1 258 34.1
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 8.6e-18 94.7 205 37.1
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 8.6e-18 94.7 205 37.1
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 4.2e-17 92.4 194 38.7
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 7.2e-17 91.7 202 33.2
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 9.5e-17 91.3 207 36.7
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 9.5e-17 91.3 207 36.7
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 9.5e-17 91.3 183 35.0
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 1.2e-16 90.9 207 36.2
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 6.1e-16 88.6 212 37.7
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.0e-15 87.8 111 49.5
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 1.0e-15 87.8 101 47.5
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.4e-15 87.4 201 35.8
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 5.2e-15 85.5 190 36.3
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.5e-14 84.0 211 34.1
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 3.4e-14 82.8 164 39.6
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 9.8e-14 81.3 97 47.4
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 3.7e-13 79.3 187 34.2
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 2.4e-12 76.6 193 33.7
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 4.5e-11 72.4 116 34.5
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 1.1e-09 67.8 176 31.8
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 2.5e-09 66.6 166 31.9
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 3.3e-09 66.2 194 29.4
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 4.3e-09 65.9 243 28.4
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 1.6e-08 63.9 109 41.3
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 3.0e-07 59.7 93 40.9
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 1.5e-06 57.4 76 44.7
Zm00001eb076410 Zea mays HOM05D004006 ORTHO05D004585 3.4e-06 56.2 75 46.7


User provided reference genes

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