Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p17810 Brassica napus HOM05D005772 ORTHO05D006468 2.0e-105 386.0 223 100.0
BcaC05g26092 Brassica carinata HOM05D005772 ORTHO05D006468 5.7e-100 367.9 226 87.6
Carub.0001s2117 Capsella rubella HOM05D005772 ORTHO05D006468 1.6e-81 306.6 226 80.1
C05p20700 Brassica napus HOM05D005772 ORTHO05D006468 5.0e-80 301.6 197 89.8
AL1G34900 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 1.1e-79 300.4 225 79.6
AT1G21722 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 2.5e-79 299.3 223 80.3
Thhalv10008678m.g Eutrema salsugineum HOM05D005772 ORTHO05D006468 7.2e-79 297.7 226 75.7
A07p14940 Brassica napus HOM05D005772 ORTHO05D006468 1.2e-78 297.0 221 72.9
BcaB07g32170 Brassica carinata HOM05D005772 ORTHO05D006468 5.7e-76 288.1 187 93.0
CARHR022100 Cardamine hirsuta HOM05D005772 ORTHO05D006468 6.8e-69 264.6 221 74.7
Aa31LG7G5690 Aethionema arabicum HOM05D002121 ORTHO05D004000 2.6e-52 209.5 225 64.4
THA.LOC104800210 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 2.3e-45 186.4 216 51.4
Thecc.08G129200 Theobroma cacao HOM05D005772 ORTHO05D006468 3.0e-40 169.5 239 42.3
Gohir.A05G237000 Gossypium hirsutum HOM05D005772 ORTHO05D006468 3.4e-36 156.0 233 42.1
Gohir.D05G239100 Gossypium hirsutum HOM05D005772 ORTHO05D006468 4.4e-36 155.6 234 38.5
Gorai.009G247900 Gossypium raimondii HOM05D005772 ORTHO05D006468 7.6e-36 154.8 235 40.4
Duzib093G1216 Durio zibethinus HOM05D005772 ORTHO05D006468 1.9e-34 150.2 240 39.2
PGR042G3290 Punica granatum HOM05D005772 ORTHO05D006468 1.6e-33 147.1 225 42.2
Ciclev10003748m.g Citrus clementina HOM05D005772 ORTHO05D006468 2.7e-33 146.4 239 39.3
BolC5t30769H Brassica oleracea HOM05D005772 ORTHO05D006468 2.3e-32 143.3 226 46.5
Manes.02G166200 Manihot esculenta HOM05D005772 ORTHO05D006468 2.3e-32 143.3 226 38.9
Cpa.g.sc64.117 Carica papaya HOM05D005772 ORTHO05D006468 5.1e-32 142.1 227 39.2
Hma1.2p1_0612F.1_g188830 Hydrangea macrophylla HOM05D005772 ORTHO05D006468 6.6e-32 141.7 230 40.0
TPR.G21059 Trifolium pratense HOM05D005772 ORTHO05D006468 2.8e-30 136.3 241 37.8
QL09p033796 Quercus lobata HOM05D005772 ORTHO05D006468 3.6e-30 136.0 239 43.1
Potri.005G180400 Populus trichocarpa HOM05D005772 ORTHO05D006468 6.2e-30 135.2 222 39.6
Actinidia15231 Actinidia chinensis HOM05D005772 ORTHO05D006468 1.8e-29 133.7 215 39.5
CiPaw.16G025800 Carya illinoinensis HOM05D005772 ORTHO05D006468 5.8e-28 128.6 231 38.5
Actinidia21305 Actinidia chinensis HOM05D005772 ORTHO05D006468 8.4e-27 124.8 223 37.2
TAR628G1655 Trochodendron aralioides HOM05D005772 ORTHO05D006468 1.1e-26 124.4 230 36.1
Nitab4.5_0000111g0180 Nicotiana tabacum HOM05D005772 ORTHO05D006468 2.4e-26 123.2 221 38.9
Phvul.007G102200 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 2.7e-25 119.8 246 32.9
BraA07t29240Z Brassica rapa HOM05D005772 ORTHO05D006468 3.5e-25 119.4 222 41.4
Glyma.04G249200 Glycine max HOM05D005772 ORTHO05D006468 7.9e-25 118.2 246 35.0
Lj1g0001548 Lotus japonicus HOM05D005772 ORTHO05D006468 7.9e-25 118.2 237 37.1
SGA_v2.0_scaffold52G18944 Striga asiatica HOM05D005772 ORTHO05D006468 3.9e-24 115.9 236 34.7
Migut.C01111 Erythranthe guttata HOM05D005772 ORTHO05D006468 5.1e-24 115.5 225 36.9
ClCG11G015880 Citrullus lanatus HOM05D005772 ORTHO05D006468 6.7e-24 115.2 112 50.0
VMungo1309G2764 Vigna mungo HOM05D005772 ORTHO05D006468 6.7e-24 115.2 237 32.5
MBI06_g44579_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 8.7e-24 114.8 223 35.0
Cc10_g12210 Coffea canephora HOM05D005772 ORTHO05D006468 1.1e-23 114.4 231 42.0
Nn5g28367 Nelumbo nucifera HOM05D005772 ORTHO05D006468 1.1e-23 114.4 229 33.6
Psat5g087080 Pisum sativum HOM05D005772 ORTHO05D006468 1.5e-23 114.0 246 34.6
DCAR_003562 Daucus carota HOM05D005772 ORTHO05D006468 1.9e-23 113.6 226 45.1
BcaB03g14256 Brassica carinata HOM05D002121 ORTHO05D004000 1.3e-22 110.9 121 57.0
Lalb_Chr08g0241421 Lupinus albus HOM05D005772 ORTHO05D006468 1.6e-22 110.5 240 33.3
Migut.E00857 Erythranthe guttata HOM05D005772 ORTHO05D006468 1.8e-21 107.1 230 35.7
GSVIVG01008837001 Vitis vinifera HOM05D005772 ORTHO05D006468 2.4e-21 106.7 112 48.2
Dinv27285 Davidia involucrata HOM05D005772 ORTHO05D006468 3.1e-21 106.3 214 35.5
Migut.E01717 Erythranthe guttata HOM05D005772 ORTHO05D006468 3.1e-21 106.3 230 35.2
arahy.Tifrunner.gnm1.ann1.AWF3QX Arachis hypogaea HOM05D005772 ORTHO05D006468 4.0e-21 105.9 221 34.8
MELO3C010502.2 Cucumis melo HOM05D005772 ORTHO05D006468 5.3e-21 105.5 175 36.6
Nitab4.5_0004208g0030 Nicotiana tabacum HOM05D005772 ORTHO05D006468 5.3e-21 105.5 235 34.5
CsaV3_4G028090 Cucumis sativus L. HOM05D005772 ORTHO05D006468 1.5e-20 104.0 175 35.4
Glyma.06G113802 Glycine max HOM05D005772 ORTHO05D006468 1.3e-19 100.9 277 30.7
MSTRG.1426 Avicennia marina HOM05D005772 ORTHO05D006468 2.9e-19 99.8 236 31.8
Phvul.009G125600 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 2.9e-19 99.8 189 31.7
CANSAT64G1440 Cannabis sativa HOM05D005772 ORTHO05D006468 6.4e-19 98.6 238 33.2
CSS0028957 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 4.2e-18 95.9 202 33.7
Aqoxy6G00258 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 9.3e-18 94.7 212 31.1
arahy.Tifrunner.gnm1.ann1.B1JKF4 Arachis hypogaea HOM05D005772 ORTHO05D006468 3.5e-17 92.8 204 33.8
SGA_v2.0_scaffold52G18951 Striga asiatica HOM05D005772 ORTHO05D006468 6.7e-16 88.6 213 32.4
Oeu009481.1 Olea europaea HOM05D005772 ORTHO05D006468 1.9e-15 87.0 226 38.5
Solyc11g017475.1 Solanum lycopersicum HOM05D005772 ORTHO05D006468 2.8e-14 83.2 219 32.9
TWI18G0423 Tripterygium wilfordii HOM05D005772 ORTHO05D006468 2.8e-14 83.2 103 38.8
Lj4A634T17 Lonicera japonica HOM05D005772 ORTHO05D006468 3.7e-14 82.8 200 32.5
Ciclev10013938m.g Citrus clementina HOM05D005772 ORTHO05D006468 3.1e-13 79.7 109 35.8
Ciclev10013939m.g Citrus clementina HOM05D005772 ORTHO05D006468 3.1e-13 79.7 109 35.8
PGR031G3661 Punica granatum HOM05D005772 ORTHO05D006468 3.1e-13 79.7 108 37.0
Ciclev10013941m.g Citrus clementina HOM05D005772 ORTHO05D006468 4.0e-13 79.3 103 36.9
SalBow5G3743 Salvia bowleyana HOM05D005772 ORTHO05D006468 4.0e-13 79.3 233 38.6
BolC5t30910H Brassica oleracea HOM05D002121 ORTHO05D039495 9.0e-13 78.2 41 95.1
CiPaw.01G207400 Carya illinoinensis HOM05D005772 ORTHO05D006468 9.0e-13 78.2 103 37.9
CANSAT01G3073 Cannabis sativa HOM05D005772 ORTHO05D006468 1.5e-12 77.4 103 36.9
QL06p046996 Quercus lobata HOM05D005772 ORTHO05D006468 2.0e-12 77.0 158 31.0
Prupe.3G025100 Prunus persica HOM05D005772 ORTHO05D006468 2.6e-12 76.6 99 38.4
SGA_v2.0_scaffold24G10436 Striga asiatica HOM05D002121 ORTHO05D004000 2.6e-12 76.6 209 32.1
Cfa003428 Carpinus fangiana HOM05D005772 ORTHO05D006468 3.4e-12 76.3 103 35.9
CiPaw.02G128300 Carya illinoinensis HOM05D005772 ORTHO05D006468 1.0e-11 74.7 210 29.5
Nn8g41076 Nelumbo nucifera HOM05D005772 ORTHO05D006468 1.3e-11 74.3 109 35.8
Potri.007G001650 Populus trichocarpa HOM05D005772 ORTHO05D006468 2.2e-11 73.6 103 35.9
SalBow5G0344 Salvia bowleyana HOM05D005772 ORTHO05D006468 2.2e-11 73.6 233 38.2
Thecc.06G054300 Theobroma cacao HOM05D005772 ORTHO05D006468 4.9e-11 72.4 103 35.0
CSS0023973 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 1.9e-10 70.5 103 33.0
FAN02G1413 Fragaria x ananassa HOM05D005772 ORTHO05D006468 3.2e-10 69.7 97 35.1
Rhsim08G0251400 Rhododendron simsii HOM05D000927 ORTHO05D000850 3.2e-10 69.7 108 32.4
Atru.chr13.1514 Acer truncatum HOM05D005772 ORTHO05D006468 4.2e-10 69.3 168 32.1
MBI06_g27497_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 4.2e-10 69.3 108 34.3
SalBow8G0153 Salvia bowleyana HOM05D005772 ORTHO05D006468 5.5e-10 68.9 50 56.0
HPP92_009982 Vanilla planifolia HOM05D005772 ORTHO05D006468 5.5e-10 68.9 163 27.6
RcHm_v2.0_Chr2g0149081 Rosa chinensis HOM05D005772 ORTHO05D006468 7.1e-10 68.6 99 35.4
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 7.1e-10 68.6 108 33.3
FAN09G4514 Fragaria x ananassa HOM05D005772 ORTHO05D006468 2.1e-09 67.0 97 34.0
Potri.007G001400 Populus trichocarpa HOM05D005772 ORTHO05D006468 2.1e-09 67.0 204 29.4
Aqoxy2G03016 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 2.7e-09 66.6 217 25.3
FAN14G5951 Fragaria x ananassa HOM05D005772 ORTHO05D006468 2.7e-09 66.6 97 34.0
MD04G1024200 Malus domestica HOM05D005772 ORTHO05D006468 3.5e-09 66.2 99 31.3
Sabra07G0001200 Salix brachista HOM05D005772 ORTHO05D006468 3.5e-09 66.2 205 30.2
unitig_22.g6227 Utricularia gibba HOM05D005772 ORTHO05D006468 3.5e-09 66.2 59 49.2
PSO063G1689 Papaver somniferum HOM05D005772 ORTHO05D006468 1.3e-08 64.3 108 28.7
vmacro10401 Vaccinium macrocarpon HOM05D005772 ORTHO05D006468 2.3e-08 63.5 103 32.0
AT1G78922 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 3.0e-08 63.2 103 29.1
Carub.0002s2577 Capsella rubella HOM05D005772 ORTHO05D006468 5.1e-08 62.4 103 29.1
CARHR072530 Cardamine hirsuta HOM05D005772 ORTHO05D006468 5.1e-08 62.4 103 31.1
PSO170G5960 Papaver somniferum HOM05D005772 ORTHO05D006468 1.1e-07 61.2 108 27.8
Lj3g0026748 Lotus japonicus HOM05D005772 ORTHO05D006468 1.5e-07 60.8 209 24.4
Oeu038376.1 Olea europaea HOM05D005772 ORTHO05D006468 1.5e-07 60.8 103 29.1
BcaB02g07187 Brassica carinata HOM05D005772 ORTHO05D006468 1.9e-07 60.5 103 30.1
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 1.9e-07 60.5 103 30.1
C06p30330 Brassica napus HOM05D005772 ORTHO05D006468 1.9e-07 60.5 103 30.1
BolC6t38196H Brassica oleracea HOM05D005772 ORTHO05D006468 1.9e-07 60.5 103 30.1
A07p27410 Brassica napus HOM05D005772 ORTHO05D006468 2.5e-07 60.1 103 30.1
Nitab4.5_0003012g0080 Nicotiana tabacum HOM05D005772 ORTHO05D006468 2.5e-07 60.1 57 47.4
TAR625G1307 Trochodendron aralioides HOM05D005772 ORTHO05D006468 2.5e-07 60.1 157 28.7
Aa31LG4G2060 Aethionema arabicum HOM05D005772 ORTHO05D006468 3.3e-07 59.7 107 30.8
BraA07t30382Z Brassica rapa HOM05D005772 ORTHO05D006468 3.3e-07 59.7 103 29.1
CSS0004874 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 4.3e-07 59.3 103 31.1
Medtr0032s0080 Medicago truncatula HOM05D005772 ORTHO05D006468 4.3e-07 59.3 169 29.0
AL2G39360 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 2.8e-06 56.6 87 29.9


User provided reference genes

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