Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p17540 Brassica napus HOM05D012069 ORTHO05D009824 4.0e-155 551.6 323 100.0
BraA06t24850Z Brassica rapa HOM05D012069 ORTHO05D009824 4.5e-154 548.1 323 99.4
BcaC05g26060 Brassica carinata HOM05D012069 ORTHO05D009824 5.5e-136 488.0 326 90.5
BolC5t30735H Brassica oleracea HOM05D012069 ORTHO05D009824 5.5e-136 488.0 326 90.5
C05p20410 Brassica napus HOM05D012069 ORTHO05D009824 9.3e-136 487.3 326 90.5
BcaB07g32147 Brassica carinata HOM05D012069 ORTHO05D009824 1.8e-131 473.0 339 86.1
Sp1g19040 Schrenkiella parvula HOM05D012069 ORTHO05D009824 8.5e-113 411.0 330 76.4
Thhalv10009526m.g Eutrema salsugineum HOM05D012069 ORTHO05D009824 1.4e-107 393.7 344 72.7
AL1G34650 Arabidopsis lyrata HOM05D012069 ORTHO05D009824 5.3e-107 391.7 329 72.0
Carub.0001s2093 Capsella rubella HOM05D012069 ORTHO05D009824 2.7e-98 362.8 332 68.7
AT1G21510 Arabidopsis thaliana HOM05D012069 ORTHO05D009824 3.2e-96 355.9 327 67.6
CARHR021870 Cardamine hirsuta HOM05D012069 ORTHO05D009824 9.1e-91 337.8 329 64.1
THA.LOC104813286 Tarenaya hassleriana HOM05D012069 ORTHO05D009824 1.0e-41 174.9 336 44.6
Cpa.g.sc64.159 Carica papaya HOM05D007988 ORTHO05D009824 2.5e-24 117.1 352 36.4
Manes.02G170000 Manihot esculenta HOM05D007988 ORTHO05D009824 4.0e-22 109.8 342 32.2
RcHm_v2.0_Chr6g0306951 Rosa chinensis HOM05D007988 ORTHO05D009824 2.6e-21 107.1 336 38.4
Potri.002G076200 Populus trichocarpa HOM05D007988 ORTHO05D009824 3.8e-20 103.2 345 32.5
Prupe.1G442100 Prunus persica HOM05D007988 ORTHO05D009824 8.4e-20 102.1 323 30.7
Ciclev10004037m.g Citrus clementina HOM05D007988 ORTHO05D009824 3.2e-19 100.1 342 34.8
Gohir.D05G240900 Gossypium hirsutum HOM05D007988 ORTHO05D009824 3.2e-19 100.1 354 33.9
Gorai.009G250000 Gossypium raimondii HOM05D007988 ORTHO05D009824 3.2e-19 100.1 354 33.9
Thecc.08G135700 Theobroma cacao HOM05D007988 ORTHO05D009824 5.5e-19 99.4 344 34.3
Gohir.A05G239200 Gossypium hirsutum HOM05D007988 ORTHO05D009824 9.3e-19 98.6 353 33.7
Lj1g0027207 Lotus japonicus HOM05D007988 ORTHO05D009824 1.2e-18 98.2 353 30.6
TWI60G0631 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 1.2e-18 98.2 347 30.5
Atru.chr13.1616 Acer truncatum HOM05D007988 ORTHO05D009824 4.6e-18 96.3 341 32.8
Duzib116G0104 Durio zibethinus HOM05D007988 ORTHO05D009824 4.6e-18 96.3 344 32.6
CiPaw.15G029500 Carya illinoinensis HOM05D007988 ORTHO05D009824 6.0e-18 95.9 342 33.3
Sabra05G0140800 Salix brachista HOM05D007988 ORTHO05D009824 1.8e-17 94.4 350 32.3
Glyma.04G244300 Glycine max HOM05D007988 ORTHO05D009824 2.3e-17 94.0 351 34.2
QL09p030989 Quercus lobata HOM05D007988 ORTHO05D009824 2.3e-17 94.0 341 34.3
FAN27G1764 Fragaria x ananassa HOM05D007988 ORTHO05D009824 3.9e-17 93.2 332 35.8
FvH4_2g35040 Fragaria vesca HOM05D007988 ORTHO05D009824 5.1e-17 92.8 338 35.5
Duzib041G0811 Durio zibethinus HOM05D007988 ORTHO05D009824 6.7e-17 92.4 344 33.1
COL.COLO4_33785 Corchorus olitorius HOM05D007988 ORTHO05D009824 8.7e-17 92.0 236 35.6
TWI34G1662 Tripterygium wilfordii HOM05D007988 ORTHO05D009824 7.4e-16 89.0 308 31.2
Ca_16619_v3 Cicer arietinum L. HOM05D007988 ORTHO05D009824 9.7e-16 88.6 338 34.6
CiPaw.16G021200 Carya illinoinensis HOM05D007988 ORTHO05D009824 1.3e-15 88.2 345 31.3
Duzib093G1224 Durio zibethinus HOM05D007988 ORTHO05D009824 2.2e-15 87.4 346 33.5
Phvul.009G131400 Phaseolus vulgaris HOM05D007988 ORTHO05D009824 6.3e-15 85.9 241 34.0
Glyma.06G119000 Glycine max HOM05D007988 ORTHO05D009824 1.1e-14 85.1 362 35.6
MD15G1088100 Malus domestica HOM05D007988 ORTHO05D009824 1.1e-14 85.1 347 33.4
Haze_17653 Corylus avellana HOM05D007988 ORTHO05D009824 1.8e-14 84.3 222 35.1
C07p01080 Brassica napus HOM05D012069 ORTHO05D040096 6.9e-14 82.4 137 42.3
FAN15G1013 Fragaria x ananassa HOM05D007988 ORTHO05D009824 1.2e-13 81.6 214 34.6
Medtr3g088735 Medicago truncatula HOM05D007988 ORTHO05D009824 1.2e-13 81.6 231 33.3
TPR.G6352 Trifolium pratense HOM05D007988 ORTHO05D009824 1.2e-13 81.6 338 34.9
Eucgr.F02525 Eucalyptus grandis HOM05D007988 ORTHO05D009824 2.6e-13 80.5 238 34.0
Lalb_Chr10g0101461 Lupinus albus HOM05D007988 ORTHO05D009824 2.6e-13 80.5 222 34.2
VMungo1309G2256 Vigna mungo HOM05D007988 ORTHO05D009824 2.6e-13 80.5 229 32.3
BraA02t07661Z Brassica rapa HOM05D012069 ORTHO05D040096 1.0e-12 78.6 137 40.9
CANSAT25G2204 Cannabis sativa HOM05D007988 ORTHO05D009824 1.3e-12 78.2 384 31.2
Psat0s3071g0240 Pisum sativum HOM05D007988 ORTHO05D009824 1.7e-12 77.8 231 35.5
GSVIVG01008783001 Vitis vinifera HOM05D007988 ORTHO05D009824 6.5e-12 75.9 341 33.7
Actinidia29496 Actinidia chinensis HOM05D000744 ORTHO05D000332 2.5e-11 73.9 222 33.3
TAR381G0794 Trochodendron aralioides HOM05D007988 ORTHO05D009824 4.2e-11 73.2 333 31.8
arahy.Tifrunner.gnm1.ann1.GX31L7 Arachis hypogaea HOM05D007988 ORTHO05D009824 1.2e-10 71.6 232 31.9
Lj4P663T19 Lonicera japonica HOM05D007988 ORTHO05D009824 1.2e-10 71.6 339 29.8
arahy.Tifrunner.gnm1.ann1.1JY9DA Arachis hypogaea HOM05D007988 ORTHO05D009824 2.1e-10 70.9 232 31.9
Lj4P666T14 Lonicera japonica HOM05D007988 ORTHO05D009824 3.6e-10 70.1 339 28.9
CSS0046822 Camellia sinensis var. sinensis HOM05D007988 ORTHO05D009824 1.8e-09 67.8 338 31.1
Cc10_g13460 Coffea canephora HOM05D007988 ORTHO05D009824 1.8e-09 67.8 352 26.7
Rhsim11G0074200 Rhododendron simsii HOM05D007988 ORTHO05D009824 2.3e-09 67.4 339 31.3
Nn1g08990 Nelumbo nucifera HOM05D007988 ORTHO05D009824 5.1e-09 66.2 335 26.0
Oeu022143.1 Olea europaea HOM05D007988 ORTHO05D009824 6.7e-09 65.9 244 28.7
Sopen04g026140 Solanum pennellii HOM05D007988 ORTHO05D009824 6.7e-09 65.9 355 32.1
CAN.G46.16 Capsicum annuum HOM05D007988 ORTHO05D009824 9.7e-08 62.0 236 30.5
FAN20G0590 Fragaria x ananassa HOM05D007988 ORTHO05D009824 2.2e-07 60.8 135 39.3
Nn5g28477 Nelumbo nucifera HOM05D007988 ORTHO05D009824 6.3e-07 59.3 234 32.9
HanXRQChr09g0256671 Helianthus annuus HOM05D007988 ORTHO05D009824 4.1e-06 56.6 328 27.1
DCAR_003597 Daucus carota HOM05D007988 ORTHO05D009824 5.3e-06 56.2 223 30.0


User provided reference genes

Program Settings