Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 1.3e-114 416.4 201 100.0
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 2.0e-112 409.1 201 98.0
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 1.0e-108 396.7 207 93.2
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 1.5e-96 356.3 212 85.8
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 5.0e-95 351.3 207 86.0
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 6.5e-95 350.9 212 86.3
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 2.5e-94 349.0 180 92.8
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 2.2e-90 335.9 210 81.4
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 2.8e-90 335.5 182 89.6
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 1.8e-89 332.8 207 79.7
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 5.3e-89 331.3 184 87.5
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 2.1e-85 319.3 206 78.2
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 1.4e-84 316.6 208 77.4
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 3.0e-84 315.5 167 89.2
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 3.0e-84 315.5 167 89.2
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 1.5e-83 313.2 182 83.5
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 6.3e-82 307.8 202 79.2
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 5.9e-80 301.2 185 77.8
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.2e-77 293.5 189 75.1
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 2.1e-77 292.7 186 75.8
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 2.1e-77 292.7 186 75.8
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.0e-76 290.4 187 73.3
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 3.0e-76 288.9 163 81.6
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 1.5e-75 286.6 163 80.4
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.5e-75 286.6 181 74.0
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 2.0e-75 286.2 164 81.1
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 4.4e-75 285.0 189 72.0
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 5.7e-75 284.6 167 79.6
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 9.7e-75 283.9 157 81.5
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.3e-74 283.5 184 72.8
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 1.7e-74 283.1 157 82.2
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 2.8e-74 282.3 144 86.1
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 3.7e-74 282.0 164 79.9
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 4.8e-74 281.6 157 80.3
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 8.2e-74 280.8 178 75.8
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 8.2e-74 280.8 176 74.4
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 8.2e-74 280.8 192 71.4
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 1.1e-73 280.4 160 80.0
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 1.4e-73 280.0 150 85.3
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 1.4e-73 280.0 178 75.3
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 1.4e-73 280.0 158 81.0
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.8e-73 279.6 178 75.3
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 2.4e-73 279.3 157 80.3
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 2.4e-73 279.3 151 85.4
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 3.1e-73 278.9 147 84.4
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 3.1e-73 278.9 178 75.3
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 3.1e-73 278.9 164 77.4
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 4.1e-73 278.5 178 74.7
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 4.1e-73 278.5 166 77.7
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 9.1e-73 277.3 181 74.0
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 1.2e-72 276.9 188 72.3
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.2e-72 276.9 151 82.8
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 1.6e-72 276.6 164 77.4
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 1.6e-72 276.6 183 73.2
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 1.6e-72 276.6 189 71.4
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 1.6e-72 276.6 143 86.7
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 2.7e-72 275.8 167 77.8
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 5.9e-72 274.6 183 72.7
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 7.7e-72 274.2 149 81.9
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 7.7e-72 274.2 183 71.6
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 1.0e-71 273.9 147 81.0
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 1.0e-71 273.9 147 81.0
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 1.3e-71 273.5 177 72.3
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 1.3e-71 273.5 177 72.3
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 1.3e-71 273.5 147 81.0
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 1.3e-71 273.5 143 82.5
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 1.7e-71 273.1 144 84.0
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 1.7e-71 273.1 182 71.4
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 2.2e-71 272.7 152 82.9
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 2.2e-71 272.7 152 82.9
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 2.2e-71 272.7 181 71.3
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 5.0e-71 271.6 223 64.1
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 1.1e-70 270.4 186 75.8
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 1.5e-70 270.0 151 78.8
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 4.2e-70 268.5 180 70.6
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 5.5e-70 268.1 142 83.8
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 7.2e-70 267.7 155 80.0
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 3.6e-69 265.4 181 69.6
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 4.7e-69 265.0 158 75.3
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 1.8e-68 263.1 164 73.2
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 4.0e-68 261.9 141 80.1
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 5.2e-68 261.5 142 81.0
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 6.8e-68 261.2 165 74.5
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 1.2e-67 260.4 154 76.0
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 2.6e-67 259.2 180 71.1
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 5.7e-67 258.1 143 81.8
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 7.0e-65 251.1 143 77.6
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 9.1e-65 250.8 159 72.3
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 3.3e-62 242.3 140 73.6
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 9.5e-62 240.7 126 84.1
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 3.6e-61 238.8 171 64.3
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 4.7e-61 238.4 155 73.5
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 4.7e-61 238.4 163 72.4
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 4.7e-61 238.4 158 72.8
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 6.1e-61 238.0 140 73.6
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 9.8e-59 230.7 143 75.5
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 1.3e-58 230.3 119 84.9
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 1.7e-58 229.9 126 84.1
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 2.2e-58 229.6 127 79.5
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 2.8e-58 229.2 141 75.9
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 3.1e-57 225.7 127 79.5
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 4.1e-57 225.3 159 69.8
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 5.9e-56 221.5 140 68.6
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 1.5e-54 216.9 168 63.7
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 4.3e-54 215.3 128 77.3
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 1.4e-52 210.3 131 75.6
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 1.8e-52 209.9 120 78.3
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 4.9e-50 201.8 119 79.0
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 5.0e-47 191.8 106 79.2
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 5.6e-46 188.3 99 84.8
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 7.5e-43 177.9 178 49.4
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 7.0e-41 171.4 184 49.5
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 2.7e-40 169.5 93 83.9
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.0e-39 167.5 150 54.7
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 1.3e-39 167.2 146 53.4
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 3.9e-39 165.6 91 82.4
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 5.1e-39 165.2 153 54.2
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 4.3e-38 162.2 116 66.4
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 1.2e-37 160.6 160 50.0
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 1.6e-37 160.2 87 82.8
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 2.4e-33 146.4 157 51.6
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.2e-33 146.0 72 95.8
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.2e-32 144.1 140 47.9
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 2.7e-32 142.9 215 48.8
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 2.3e-31 139.8 138 50.0
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.0e-31 139.4 70 94.3
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 5.6e-30 135.2 85 71.8
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 6.2e-29 131.7 59 96.6
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 3.8e-26 122.5 133 45.9
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 3.0e-23 112.8 53 92.5
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 9.6e-22 107.8 118 45.8
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 9.3e-17 91.3 84 54.8
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 6.2e-13 78.6 146 38.4
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 8.1e-13 78.2 145 32.4
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 1.4e-12 77.4 82 54.9
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 1.3e-10 70.9 141 32.6
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 5.4e-09 65.5 31 83.9
PRCOL_00001511 Prasinoderma coloniale HOM05D005558 ORTHO05D034498 2.5e-06 56.6 154 24.7


User provided reference genes

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