Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 2.4e-133 478.8 234 100.0
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 1.9e-130 469.2 234 98.7
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 1.8e-128 462.6 234 97.4
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 6.8e-128 460.7 234 96.6
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 5.9e-116 421.0 224 93.8
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 9.5e-114 413.7 217 92.6
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 2.3e-112 409.1 234 85.9
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 2.0e-111 406.0 234 83.8
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 1.7e-110 402.9 234 82.9
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 8.3e-110 400.6 234 83.3
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 5.0e-107 391.3 234 80.3
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 6.8e-96 354.4 243 70.8
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 1.9e-90 336.3 232 72.0
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 8.1e-89 330.9 228 68.0
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 1.4e-88 330.1 227 69.2
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 1.8e-88 329.7 214 72.4
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 2.9e-86 322.4 222 68.9
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 8.4e-86 320.9 228 68.4
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.4e-85 320.1 217 70.5
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 3.2e-85 318.9 222 68.0
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 1.0e-83 313.9 219 67.6
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 1.9e-82 309.7 214 69.2
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 2.4e-80 302.8 223 65.9
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 2.0e-79 299.7 220 65.0
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 1.7e-78 296.6 173 85.0
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 3.8e-78 295.4 219 63.5
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 3.8e-78 295.4 220 63.6
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 3.8e-78 295.4 220 63.6
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 4.9e-78 295.0 214 65.4
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 1.4e-77 293.5 258 57.8
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.3e-75 287.0 215 66.0
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 3.9e-75 285.4 238 58.8
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 3.4e-71 272.3 239 56.5
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 2.8e-65 252.7 213 59.2
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 3.7e-65 252.3 215 54.0
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 4.8e-65 251.9 225 55.1
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 1.1e-64 250.8 213 54.5
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 1.4e-64 250.4 207 55.6
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 5.3e-64 248.4 214 56.1
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 6.9e-64 248.1 206 54.9
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 6.9e-64 248.1 213 56.8
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 9.0e-64 247.7 206 54.9
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 9.0e-64 247.7 213 57.7
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 9.0e-64 247.7 202 55.0
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 1.2e-63 247.3 210 56.2
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 2.0e-63 246.5 217 53.9
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 3.4e-63 245.7 208 56.7
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.0e-62 244.2 208 56.2
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 1.3e-62 243.8 219 54.3
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 1.3e-62 243.8 228 54.4
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 1.3e-62 243.8 199 56.3
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 1.3e-62 243.8 225 52.9
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 1.7e-62 243.4 207 57.5
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 2.9e-62 242.7 226 52.7
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 3.8e-62 242.3 225 52.4
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 4.9e-62 241.9 212 53.8
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 6.5e-62 241.5 205 54.6
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.1e-61 240.7 209 54.1
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.1e-61 240.7 209 54.1
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 1.4e-61 240.4 193 59.1
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 2.5e-61 239.6 208 55.3
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 2.5e-61 239.6 231 48.5
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 3.2e-61 239.2 222 54.5
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 5.5e-61 238.4 214 54.2
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 5.5e-61 238.4 194 56.2
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 5.5e-61 238.4 218 49.1
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 7.1e-61 238.0 197 57.4
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 1.2e-60 237.3 194 56.2
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 1.6e-60 236.9 212 53.8
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 2.1e-60 236.5 203 52.7
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 2.7e-60 236.1 210 53.3
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 3.5e-60 235.7 200 52.5
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 3.5e-60 235.7 219 52.5
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 3.5e-60 235.7 219 53.0
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 6.0e-60 235.0 224 51.3
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 1.8e-59 233.4 201 56.7
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.3e-59 233.0 200 55.0
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.9e-59 232.3 210 52.4
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.9e-59 232.3 215 52.1
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.9e-59 232.3 215 52.1
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 1.1e-58 230.7 208 52.4
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 1.1e-58 230.7 198 55.1
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 1.1e-58 230.7 214 52.8
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 1.5e-58 230.3 202 54.0
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 2.5e-58 229.6 222 47.7
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.3e-58 229.2 219 50.7
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 5.7e-58 228.4 241 48.5
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 6.3e-57 224.9 175 56.6
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 6.3e-57 224.9 228 47.8
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 8.2e-57 224.6 197 53.3
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 1.1e-56 224.2 223 49.3
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.4e-56 223.8 220 50.9
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.4e-56 223.8 211 50.7
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 2.4e-56 223.0 212 49.5
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 2.4e-56 223.0 219 50.2
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 1.5e-55 220.3 209 52.2
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 1.5e-55 220.3 213 47.9
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 2.6e-55 219.5 213 50.2
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 2.6e-55 219.5 198 51.5
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 4.5e-55 218.8 207 49.8
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 5.9e-55 218.4 204 49.5
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 7.6e-55 218.0 208 52.4
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.0e-54 217.6 226 48.7
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 1.0e-54 217.6 213 51.2
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 1.3e-54 217.2 205 52.7
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 1.7e-54 216.9 218 49.5
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.2e-54 216.5 204 50.0
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 8.5e-54 214.5 198 54.0
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.4e-53 213.8 193 51.8
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.4e-53 213.8 197 51.8
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 1.4e-53 213.8 212 49.5
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 1.4e-53 213.8 204 51.0
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 1.9e-53 213.4 204 51.0
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 4.2e-53 212.2 227 47.6
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 5.5e-53 211.8 219 48.9
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 9.3e-53 211.1 189 54.0
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 2.1e-52 209.9 216 46.8
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 4.6e-52 208.8 213 47.9
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 7.9e-52 208.0 219 47.0
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 1.0e-51 207.6 209 50.2
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 2.3e-51 206.5 213 46.0
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 3.0e-51 206.1 209 48.3
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 8.7e-51 204.5 217 46.5
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 1.1e-50 204.1 113 86.7
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 3.3e-50 202.6 113 85.8
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 5.7e-50 201.8 204 49.5
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 7.4e-50 201.4 210 48.1
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 4.8e-49 198.7 210 48.1
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 1.8e-48 196.8 217 44.2
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 1.2e-47 194.1 207 45.4
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 1.2e-47 194.1 173 56.6
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 2.6e-47 193.0 227 45.4
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 2.2e-46 189.9 197 47.7
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 6.5e-46 188.3 104 86.5
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 9.4e-45 184.5 218 43.6
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 3.6e-44 182.6 217 43.8
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 5.1e-43 178.7 199 42.7
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 7.4e-42 174.9 213 41.3
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 9.7e-42 174.5 116 69.8
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 9.7e-42 174.5 199 41.7
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 1.1e-40 171.0 208 41.3
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.4e-40 170.6 172 51.7
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 2.4e-40 169.9 212 37.7
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 1.2e-39 167.5 88 92.0
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 7.7e-39 164.9 210 42.9
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 1.1e-37 161.0 90 84.4
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 1.2e-36 157.5 193 40.9
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 3.6e-36 156.0 113 67.3
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 4.7e-36 155.6 203 42.9
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 3.9e-35 152.5 140 49.3
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 1.5e-34 150.6 191 39.3
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 2.6e-34 149.8 127 54.3
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 9.7e-34 147.9 138 53.6
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 3.7e-33 146.0 92 70.7
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 3.7e-33 146.0 217 35.9
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 8.2e-33 144.8 212 39.6
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 5.3e-32 142.1 80 83.8
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 7.0e-32 141.7 143 46.9
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 9.1e-32 141.4 214 40.2
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 4.5e-31 139.0 173 46.8
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 3.0e-27 126.3 115 54.8
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 4.0e-27 125.9 104 57.7
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 2.0e-26 123.6 144 45.8
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 1.8e-24 117.1 110 50.9
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 1.8e-24 117.1 126 42.1
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 4.1e-24 115.9 113 51.3
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 5.9e-23 112.1 120 49.2
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 6.5e-22 108.6 150 42.0
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 3.2e-21 106.3 192 33.3
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 7.2e-21 105.1 171 35.1
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 7.5e-18 95.1 63 73.0
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.4e-16 90.9 98 45.9
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 3.1e-16 89.7 87 51.7
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 5.4e-16 89.0 91 44.0
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 9.1e-16 88.2 72 55.6
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 4.5e-15 85.9 113 46.0
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.4e-11 74.3 66 57.6
C03p90670 Brassica napus HOM05D000138 ORTHO05D032089 1.7e-06 57.4 58 51.7


User provided reference genes

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