Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p16240 Brassica napus HOM05D008819 ORTHO05D003197 3.7e-141 505.0 273 100.0
BraA06t24727Z Brassica rapa HOM05D008819 ORTHO05D003197 6.7e-135 484.2 273 95.6
BcaC05g25908 Brassica carinata HOM05D008819 ORTHO05D003197 7.2e-121 437.6 273 88.3
C05p18590 Brassica napus HOM05D008819 ORTHO05D003197 7.2e-121 437.6 273 88.3
BolC5t30570H Brassica oleracea HOM05D008819 ORTHO05D003197 1.8e-116 422.9 275 85.8
BcaB07g32025 Brassica carinata HOM05D008819 ORTHO05D003197 6.5e-106 387.9 281 80.1
BcaNung03339 Brassica carinata HOM05D008819 ORTHO05D003197 5.9e-99 364.8 283 74.2
C07p23350 Brassica napus HOM05D008819 ORTHO05D003197 1.7e-98 363.2 283 73.9
BolC7t42868H Brassica oleracea HOM05D008819 ORTHO05D003197 1.6e-96 356.7 284 72.2
BolC3t16044H Brassica oleracea HOM05D008819 ORTHO05D003197 1.6e-88 330.1 194 88.7
Thhalv10008464m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 2.4e-84 316.2 279 68.5
Sp1g17870 Schrenkiella parvula HOM05D008819 ORTHO05D003197 1.8e-79 300.1 282 61.3
BcaB03g14414 Brassica carinata HOM05D008819 ORTHO05D003197 4.9e-77 292.0 287 64.8
AT1G20100 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 1.6e-75 287.0 291 63.6
BcaB03g14340 Brassica carinata HOM05D008819 ORTHO05D003197 1.3e-74 283.9 287 63.4
Carub.0001s1963 Capsella rubella HOM05D008819 ORTHO05D003197 5.8e-70 268.5 296 60.8
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 3.2e-68 262.7 292 55.8
C03p37510 Brassica napus HOM05D008819 ORTHO05D003197 1.0e-66 257.7 203 72.9
BcaC01g06727 Brassica carinata HOM05D008819 ORTHO05D003197 5.0e-66 255.4 206 69.9
AL2G35870 Arabidopsis lyrata HOM05D008819 ORTHO05D003197 1.6e-51 207.2 303 47.9
Aa31LG4G6060 Aethionema arabicum HOM05D008819 ORTHO05D003197 8.6e-50 201.4 301 47.5
BcaC03g14371 Brassica carinata HOM05D008819 ORTHO05D003197 8.6e-50 201.4 190 63.2
AT1G75860 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 2.8e-48 196.4 302 47.7
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 1.1e-47 194.5 320 44.7
C02p17840 Brassica napus HOM05D008819 ORTHO05D003197 4.3e-41 172.6 112 82.1
Thhalv10019693m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 5.6e-41 172.2 234 50.4
Sp5g31000 Schrenkiella parvula HOM05D008819 ORTHO05D003197 8.1e-40 168.3 317 40.1
CARHR020580 Cardamine hirsuta HOM05D008819 ORTHO05D003197 2.4e-39 166.8 171 57.9
A08p16950 Brassica napus HOM05D008819 ORTHO05D003197 9.0e-39 164.9 106 84.0
Carub.0002s2277 Capsella rubella HOM05D008819 ORTHO05D003197 1.2e-38 164.5 315 41.3
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 6.0e-35 152.1 295 41.0
BcaC08g47318 Brassica carinata HOM05D008819 ORTHO05D003197 3.3e-33 146.4 300 41.0
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 4.3e-33 146.0 301 42.5
BolC6t40021H Brassica oleracea HOM05D008819 ORTHO05D003197 5.6e-33 145.6 300 41.0
A07p41430 Brassica napus HOM05D008819 ORTHO05D003197 7.3e-33 145.2 294 40.5
C06p49830 Brassica napus HOM05D008819 ORTHO05D003197 1.1e-31 141.4 300 41.0
CARHR069410 Cardamine hirsuta HOM05D008819 ORTHO05D003197 4.5e-30 136.0 273 39.9
THA.LOC104813240 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 2.3e-26 123.6 265 38.9
BraA08t33657Z Brassica rapa HOM05D008819 ORTHO05D003197 3.3e-25 119.8 106 65.1
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 7.9e-19 98.6 300 34.7
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.5e-14 84.3 294 33.7
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 4.5e-14 82.8 297 34.3
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 1.0e-13 81.6 311 30.2
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 2.9e-13 80.1 314 31.2
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.1e-12 78.2 291 32.6
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.1e-12 78.2 293 33.8
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.9e-12 77.4 294 32.3
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 7.1e-12 75.5 235 31.9
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 2.1e-11 73.9 311 29.9
CARHR020590 Cardamine hirsuta HOM05D008819 ORTHO05D003197 2.1e-11 73.9 90 67.8
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.5e-11 73.2 291 32.3
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 4.6e-11 72.8 320 26.6
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 1.0e-10 71.6 341 29.0
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 3.0e-10 70.1 335 26.9
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 3.9e-10 69.7 334 26.3
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 3.9e-10 69.7 332 29.5
CARHR069790 Cardamine hirsuta HOM05D014797 ORTHO05D016596 6.7e-10 68.9 252 32.1
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 1.1e-09 68.2 312 26.6
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 1.5e-09 67.8 326 27.0
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.9e-09 67.4 265 31.7
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 1.9e-09 67.4 322 28.0
AL2G36300 Arabidopsis lyrata HOM05D014797 ORTHO05D016596 5.7e-09 65.9 251 30.7
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 5.7e-09 65.9 318 30.8
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 2.8e-08 63.5 232 31.5
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 4.8e-08 62.8 320 27.5
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 6.3e-08 62.4 317 29.3
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 1.1e-07 61.6 242 27.7
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 1.1e-07 61.6 317 28.1
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 1.1e-07 61.6 322 28.0
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 1.4e-07 61.2 315 27.6
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 2.4e-07 60.5 290 29.0
AT1G76230 Arabidopsis thaliana HOM05D014797 ORTHO05D016596 1.2e-06 58.2 86 46.5
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 1.2e-06 58.2 322 29.2
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 2.6e-06 57.0 340 22.9
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 2.6e-06 57.0 303 27.1
Actinidia17001 Actinidia chinensis HOM05D004095 ORTHO05D003197 7.7e-06 55.5 180 32.2
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 7.7e-06 55.5 297 27.9
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 1.0e-05 55.1 294 29.3
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.0e-05 55.1 341 27.6


User provided reference genes

Program Settings