Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 0.0e+00 1163.3 605 100.0
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 0.0e+00 1160.2 605 99.7
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 0.0e+00 1101.7 605 95.5
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 1.2e-311 1072.4 607 92.4
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 5.0e-284 980.7 620 83.5
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 5.6e-283 977.2 617 84.1
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 1.8e-281 972.2 617 83.5
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 5.4e-278 960.7 615 82.9
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 4.1e-270 934.5 621 80.8
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 1.8e-257 892.5 521 87.7
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 5.4e-246 854.4 632 72.3
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 1.6e-234 816.2 632 69.3
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 7.1e-230 800.8 638 68.8
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 1.9e-227 792.7 637 67.0
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 3.8e-223 778.5 637 68.0
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 7.2e-222 774.2 631 66.4
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 4.6e-221 771.5 632 66.8
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 5.0e-207 724.9 669 61.7
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 5.5e-206 721.5 626 62.9
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 4.4e-203 711.8 623 62.1
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 1.3e-202 710.3 629 61.8
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 1.7e-202 709.9 623 62.0
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 2.2e-202 709.5 629 61.7
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 3.7e-202 708.8 629 62.5
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 1.6e-197 693.3 661 58.9
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 2.0e-195 686.4 601 63.2
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 3.5e-184 649.0 654 55.2
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 1.2e-181 640.6 636 54.4
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 1.8e-180 636.7 657 53.9
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 3.0e-180 636.0 657 53.7
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 2.8e-178 629.4 534 59.6
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 2.4e-177 626.3 618 55.8
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 3.1e-177 625.9 550 59.1
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 5.4e-177 625.2 618 56.0
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 7.0e-177 624.8 597 56.6
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 1.6e-176 623.6 645 53.3
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 2.0e-176 623.2 548 59.3
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 4.5e-176 622.1 598 56.5
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 7.7e-176 621.3 526 60.8
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 1.0e-175 620.9 597 56.6
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 6.6e-175 618.2 635 53.5
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 1.1e-174 617.5 636 53.9
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 1.9e-174 616.7 653 53.3
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 5.6e-174 615.1 359 92.8
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 5.6e-174 615.1 658 52.3
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 7.3e-174 614.8 654 52.4
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.2e-173 614.0 640 54.5
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 1.2e-173 614.0 532 59.8
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 1.2e-173 614.0 654 52.3
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 1.2e-173 614.0 653 53.3
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 2.1e-173 613.2 655 52.7
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 4.7e-173 612.1 637 52.9
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 6.1e-173 611.7 640 54.1
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 6.1e-173 611.7 640 54.1
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 1.4e-172 610.5 592 56.6
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.4e-172 610.5 535 59.8
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 4.0e-172 609.0 663 51.0
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 5.2e-172 608.6 532 59.4
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 8.9e-172 607.8 531 61.0
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 2.0e-171 606.7 651 52.4
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 2.6e-171 606.3 659 51.3
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 2.6e-171 606.3 659 51.3
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 2.6e-171 606.3 648 53.1
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 3.4e-171 605.9 659 51.3
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 4.4e-171 605.5 660 52.4
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 9.8e-171 604.4 658 52.3
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 2.9e-170 602.8 648 51.5
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 3.7e-170 602.4 569 57.1
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 4.9e-170 602.1 650 50.9
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 1.1e-169 600.9 659 52.5
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 4.1e-169 599.0 670 51.5
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 4.1e-169 599.0 547 54.8
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 4.1e-169 599.0 667 52.0
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 5.4e-169 598.6 547 58.0
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 1.2e-168 597.4 661 51.6
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 4.6e-168 595.5 603 54.9
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 5.9e-168 595.1 297 100.0
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 7.8e-168 594.7 665 51.1
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 1.9e-166 590.1 523 60.0
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 1.6e-165 587.0 649 51.0
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 2.1e-165 586.6 647 52.4
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 4.4e-163 578.9 552 57.6
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 8.3e-162 574.7 578 54.5
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 1.9e-161 573.5 526 58.4
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 9.2e-161 571.2 585 52.1
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 2.3e-159 566.6 588 51.4
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 7.3e-158 561.6 665 48.7
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 9.5e-158 561.2 673 49.5
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 2.8e-157 559.7 544 55.7
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 3.6e-157 559.3 600 51.2
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 6.8e-156 555.1 651 48.8
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 1.2e-155 554.3 651 48.8
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 1.2e-155 554.3 467 58.0
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 4.4e-155 552.4 651 49.2
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 1.3e-154 550.8 656 48.0
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 2.4e-153 546.6 448 59.4
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 4.6e-152 542.3 658 48.8
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 4.3e-150 535.8 492 57.7
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 6.2e-149 531.9 501 55.5
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 6.8e-148 528.5 504 55.8
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 1.3e-146 524.2 669 47.7
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 2.9e-146 523.1 522 53.1
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 4.9e-146 522.3 511 53.8
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 1.1e-145 521.2 658 47.6
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 1.7e-143 513.8 584 50.9
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 1.7e-143 513.8 591 50.8
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 3.0e-143 513.1 552 50.4
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 3.9e-143 512.7 610 48.7
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 1.9e-142 510.4 538 51.9
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 5.2e-140 502.3 525 52.8
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 6.9e-140 501.9 555 48.6
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 1.3e-135 487.6 554 49.1
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 2.3e-135 486.9 503 50.1
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 1.8e-132 477.2 528 49.1
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 4.9e-130 469.2 565 45.5
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 1.2e-128 464.5 451 54.8
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 1.6e-128 464.2 518 49.4
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 7.9e-128 461.8 240 97.1
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 1.9e-126 457.2 565 46.9
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 4.8e-125 452.6 546 46.3
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 1.3e-122 444.5 617 42.0
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 4.1e-108 396.4 604 41.7
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 5.9e-107 392.5 610 39.3
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 3.3e-102 376.7 612 38.4
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 8.2e-93 345.5 528 43.9
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 1.5e-91 341.3 218 77.1
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 3.3e-86 323.6 548 38.0
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 1.3e-82 311.6 547 36.7
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 1.1e-81 308.5 454 38.8
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 5.2e-79 299.7 418 40.4
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 1.3e-77 295.0 547 34.2
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 2.2e-69 267.7 248 56.9
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 1.2e-56 225.3 130 86.2
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 9.5e-41 172.6 232 45.3
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 9.6e-17 92.8 549 23.1
BcaC07g37382 Brassica carinata HOM05D005308 ORTHO05D006494 1.9e-09 68.6 64 56.2
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 1.4e-07 62.4 51 60.8


User provided reference genes

Program Settings