Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 1.7e-185 652.5 332 100.0
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 1.7e-185 652.5 332 100.0
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 1.8e-174 615.9 333 94.9
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 1.8e-174 615.9 333 94.9
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 2.4e-171 605.5 341 92.1
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 7.8e-170 600.5 332 93.4
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.4e-158 563.1 339 85.0
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.8e-158 562.8 338 85.5
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 1.2e-157 560.1 338 84.9
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 4.4e-157 558.1 338 84.6
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 1.3e-156 556.6 338 85.2
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 5.4e-155 551.2 338 83.1
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 4.6e-138 495.0 341 76.2
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 1.0e-116 424.1 342 70.2
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 9.7e-96 354.4 347 59.9
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 2.2e-95 353.2 346 58.4
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 5.3e-94 348.6 333 60.4
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 6.9e-94 348.2 329 59.3
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 5.9e-93 345.1 334 59.0
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 5.9e-93 345.1 348 57.2
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 1.3e-92 344.0 329 59.9
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.2e-92 343.2 257 69.3
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.9e-92 342.8 259 68.3
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 8.5e-92 341.3 284 63.4
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 3.2e-91 339.3 353 56.9
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 5.5e-91 338.6 316 57.9
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 1.6e-90 337.0 348 56.6
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 1.6e-90 337.0 254 68.9
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 8.0e-90 334.7 334 56.9
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 8.0e-90 334.7 343 56.0
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 1.8e-89 333.6 317 58.0
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 5.2e-89 332.0 343 56.3
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 8.8e-89 331.3 233 73.0
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 8.8e-89 331.3 334 55.4
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 2.6e-88 329.7 329 57.8
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 4.4e-88 328.9 329 55.0
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 9.7e-88 327.8 285 60.0
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 6.3e-87 325.1 335 56.7
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 1.4e-86 323.9 336 55.7
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 5.3e-86 322.0 347 54.2
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 1.6e-85 320.5 376 53.5
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 7.7e-85 318.2 337 54.3
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 1.3e-84 317.4 326 54.9
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 1.9e-83 313.5 211 73.9
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 2.1e-82 310.1 343 54.8
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 4.7e-82 308.9 313 56.2
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 1.4e-81 307.4 334 53.6
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 4.0e-81 305.8 338 53.6
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 4.0e-81 305.8 315 56.2
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 1.2e-80 304.3 334 53.0
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 1.5e-80 303.9 326 54.9
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 3.3e-80 302.8 329 53.8
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 4.4e-80 302.4 349 52.7
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 4.4e-80 302.4 340 50.6
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 9.7e-80 301.2 281 58.7
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 1.3e-79 300.8 239 64.9
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 2.2e-79 300.1 233 67.0
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 2.8e-79 299.7 335 50.7
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 2.4e-78 296.6 344 51.2
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 9.1e-78 294.7 319 52.0
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 2.7e-77 293.1 221 64.7
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 1.7e-76 290.4 268 59.0
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 2.2e-76 290.0 330 50.9
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 2.9e-76 289.7 344 52.0
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 6.5e-76 288.5 244 61.5
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 1.9e-75 287.0 340 50.6
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 5.5e-75 285.4 264 56.1
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 7.2e-75 285.0 232 62.9
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 2.7e-74 283.1 214 64.5
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 1.8e-73 280.4 216 66.7
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 5.7e-72 275.4 347 45.2
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 7.5e-72 275.0 337 49.3
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 1.3e-71 274.2 337 49.3
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 2.8e-71 273.1 349 47.6
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 6.3e-71 271.9 336 49.4
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 1.4e-70 270.8 284 53.9
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 3.1e-70 269.6 232 59.1
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 1.7e-68 263.8 251 57.0
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 3.3e-67 259.6 344 47.1
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 9.5e-67 258.1 249 53.8
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 8.0e-66 255.0 308 47.7
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 1.8e-65 253.8 234 59.8
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 1.8e-65 253.8 251 57.0
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 6.8e-65 251.9 347 46.1
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 1.5e-64 250.8 341 49.0
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 2.0e-64 250.4 292 51.7
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 2.0e-64 250.4 320 49.1
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.0e-64 250.4 317 47.9
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.2e-63 246.9 349 44.7
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 3.7e-63 246.1 347 47.8
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 3.7e-63 246.1 264 49.6
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 3.7e-63 246.1 259 53.3
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 3.7e-63 246.1 208 62.5
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.5e-61 239.2 325 47.1
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.7e-60 237.3 256 47.7
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 1.9e-59 233.8 226 55.8
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 2.5e-59 233.4 204 60.3
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 3.3e-59 233.0 204 60.3
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 2.3e-57 226.9 366 42.1
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 3.4e-56 223.0 211 57.3
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 5.8e-56 222.2 293 45.1
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.4e-54 217.6 341 43.4
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 1.4e-54 217.6 323 42.7
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 1.2e-53 214.5 328 43.6
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 2.0e-53 213.8 335 43.6
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 2.0e-53 213.8 228 49.6
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 7.8e-53 211.8 202 58.4
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 1.0e-52 211.5 322 41.6
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 1.5e-51 207.6 289 43.6
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 1.9e-51 207.2 338 40.5
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 1.2e-50 204.5 249 48.2
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 2.8e-50 203.4 196 55.1
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.4e-49 201.1 132 78.0
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 3.1e-49 199.9 342 41.2
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 3.1e-49 199.9 290 42.4
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 7.8e-45 185.3 135 71.9
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 1.9e-43 180.6 325 36.9
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 3.3e-43 179.9 284 43.3
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 5.6e-43 179.1 199 49.2
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 5.6e-43 179.1 333 39.0
BcaC07g37986 Brassica carinata HOM05D004908 ORTHO05D027361 1.2e-42 177.9 113 81.4
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 1.2e-42 177.9 210 49.5
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 2.1e-42 177.2 161 58.4
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.4e-41 174.5 215 46.0
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 3.1e-41 173.3 136 64.7
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 2.0e-40 170.6 205 48.3
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 1.3e-39 167.9 346 38.4
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 4.1e-38 162.9 171 56.7
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.1e-37 160.6 247 40.5
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 5.1e-36 156.0 222 38.3
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 7.3e-35 152.1 146 58.2
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.4e-33 147.1 218 44.0
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 1.7e-31 141.0 122 63.1
BcaC02g11039 Brassica carinata HOM05D004908 ORTHO05D027361 2.2e-31 140.6 121 64.5
BolC4t23709H Brassica oleracea HOM05D004908 ORTHO05D027361 2.2e-31 140.6 121 64.5
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 4.2e-30 136.3 120 56.7
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 2.7e-29 133.7 102 67.6
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 1.7e-28 131.0 198 40.9
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 2.5e-27 127.1 155 46.5
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 1.2e-26 124.8 76 82.9
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 2.1e-26 124.0 92 65.2
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.1e-25 121.7 77 76.6
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 1.4e-25 121.3 339 33.0
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 6.9e-25 119.0 122 49.2
BraA07t28215Z Brassica rapa HOM05D004908 ORTHO05D027361 3.2e-22 110.2 78 73.1
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 3.0e-20 103.6 71 67.6
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 1.5e-19 101.3 233 34.3
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 6.2e-18 95.9 73 69.9
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 9.0e-17 92.0 97 42.3
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 2.2e-15 87.4 86 58.1
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 5.3e-09 66.2 43 69.8
BolC6t39861H Brassica oleracea HOM05D004908 ORTHO05D006418 8.4e-07 58.9 132 40.2


User provided reference genes

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