Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p13050 Brassica napus HOM05D004022 ORTHO05D004090 7.0e-50 200.3 99 100.0
BraA06t24464Z Brassica rapa HOM05D004022 ORTHO05D004090 2.2e-48 195.3 99 98.0
BcaC05g25663 Brassica carinata HOM05D004022 ORTHO05D004090 9.4e-47 189.9 99 97.0
C05p15530 Brassica napus HOM05D004022 ORTHO05D004090 2.7e-46 188.3 99 96.0
BcaB07g34047 Brassica carinata HOM05D004022 ORTHO05D004090 4.7e-46 187.6 99 96.0
BolC5t30263H Brassica oleracea HOM05D004022 ORTHO05D004090 1.0e-45 186.4 99 94.9
CARHR017720 Cardamine hirsuta HOM05D004022 ORTHO05D004090 1.3e-40 169.5 99 85.9
Sp1g15290 Schrenkiella parvula HOM05D004022 ORTHO05D004090 3.8e-40 167.9 99 83.8
BcaC07g38833 Brassica carinata HOM05D004022 ORTHO05D004090 6.5e-40 167.2 99 83.8
C08p17730 Brassica napus HOM05D004022 ORTHO05D004090 6.5e-40 167.2 99 83.8
A08p31100 Brassica napus HOM05D004022 ORTHO05D004090 8.6e-40 166.8 99 82.8
BraA08t35036Z Brassica rapa HOM05D004022 ORTHO05D004090 8.6e-40 166.8 99 82.8
AL1G29370 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 1.6e-38 162.5 96 85.4
AT1G17147 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 2.8e-38 161.8 94 85.1
Carub.0001s1689 Capsella rubella HOM05D004022 ORTHO05D004090 4.0e-37 157.9 98 78.6
Thhalv10009187m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 1.5e-36 156.0 94 83.0
BolC8t49399H Brassica oleracea HOM05D004022 ORTHO05D004090 6.3e-35 150.6 91 81.3
BcaB03g13015 Brassica carinata HOM05D004022 ORTHO05D004090 1.4e-34 149.4 92 83.7
Aa31LG7G1990 Aethionema arabicum HOM05D004022 ORTHO05D004090 2.7e-25 118.6 99 63.6
BcaB05g25138 Brassica carinata HOM05D004022 ORTHO05D004090 2.3e-24 115.5 107 60.7
BraA07t31879Z Brassica rapa HOM05D004022 ORTHO05D004090 3.9e-24 114.8 106 59.4
C02p35580 Brassica napus HOM05D004022 ORTHO05D004090 5.0e-24 114.4 103 63.1
A02p22170 Brassica napus HOM05D004022 ORTHO05D004090 6.6e-24 114.0 103 63.1
BraA02t07221Z Brassica rapa HOM05D004022 ORTHO05D004090 6.6e-24 114.0 103 63.1
BcaC03g15811 Brassica carinata HOM05D004022 ORTHO05D004090 8.6e-24 113.6 103 63.1
BcaC08g47415 Brassica carinata HOM05D004022 ORTHO05D004090 8.6e-24 113.6 106 59.4
AL2G38780 Arabidopsis lyrata HOM05D004022 ORTHO05D004090 1.1e-23 113.2 106 62.3
A07p43670 Brassica napus HOM05D004022 ORTHO05D004090 1.5e-23 112.8 106 58.5
Carub.0002s2531 Capsella rubella HOM05D004022 ORTHO05D004090 1.9e-23 112.5 107 61.7
Sp5g33510 Schrenkiella parvula HOM05D004022 ORTHO05D004090 2.5e-23 112.1 107 60.7
A07p27550 Brassica napus HOM05D004022 ORTHO05D004090 3.3e-23 111.7 105 60.0
BraA07t30397Z Brassica rapa HOM05D004022 ORTHO05D004090 3.3e-23 111.7 105 60.0
AT1G78410 Arabidopsis thaliana HOM05D004022 ORTHO05D004090 5.6e-23 110.9 103 63.1
BcaC08g45417 Brassica carinata HOM05D004022 ORTHO05D004090 7.3e-23 110.5 103 62.1
C06p30490 Brassica napus HOM05D004022 ORTHO05D004090 7.3e-23 110.5 103 62.1
BolC6t38212H Brassica oleracea HOM05D004022 ORTHO05D004090 7.3e-23 110.5 103 62.1
Thhalv10019550m.g Eutrema salsugineum HOM05D004022 ORTHO05D004090 1.6e-22 109.4 105 59.0
BcaB02g07170 Brassica carinata HOM05D004022 ORTHO05D004090 3.6e-22 108.2 101 61.4
BcaB03g16016 Brassica carinata HOM05D004022 ORTHO05D004090 6.2e-22 107.5 107 56.1
BolC6t40255H Brassica oleracea HOM05D004022 ORTHO05D004090 1.1e-21 106.7 106 58.5
BolC2t09573H Brassica oleracea HOM05D004022 ORTHO05D004090 1.8e-21 105.9 102 60.8
THA.LOC104813977 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 9.8e-20 100.1 99 58.6
CARHR071930 Cardamine hirsuta HOM05D004022 ORTHO05D004090 1.7e-16 89.4 118 49.2
THA.LOC104812289 Tarenaya hassleriana HOM05D004022 ORTHO05D004090 6.6e-16 87.4 97 51.5
C06p52350 Brassica napus HOM05D004022 ORTHO05D004090 4.0e-13 78.2 74 58.1
Aa31LG4G2550 Aethionema arabicum HOM05D004022 ORTHO05D004090 2.6e-12 75.5 100 52.0
PGR083G0572 Punica granatum HOM05D004022 ORTHO05D004090 4.4e-12 74.7 89 51.7
QL04p070411 Quercus lobata HOM05D004022 ORTHO05D004090 2.2e-11 72.4 99 45.5
QL04p070436 Quercus lobata HOM05D004022 ORTHO05D004090 3.7e-11 71.6 99 45.5
Actinidia35177 Actinidia chinensis HOM05D004022 ORTHO05D004090 1.9e-10 69.3 88 44.3
Duzib213G0178 Durio zibethinus HOM05D004022 ORTHO05D004090 3.2e-10 68.6 96 41.7
QL04p070376 Quercus lobata HOM05D004022 ORTHO05D004090 5.4e-10 67.8 99 43.4
Thecc.07G146700 Theobroma cacao HOM05D004022 ORTHO05D004090 9.2e-10 67.0 100 42.0
CAN.G1003.7 Capsicum annuum HOM05D004022 ORTHO05D004090 1.2e-09 66.6 92 41.3
CSS0009778 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.6e-09 66.2 96 44.8
Migut.M00652 Erythranthe guttata HOM05D004022 ORTHO05D004090 3.5e-09 65.1 90 43.3
Rhsim06G0184700 Rhododendron simsii HOM05D004022 ORTHO05D004090 4.6e-09 64.7 94 43.6
Phvul.005G051400 Phaseolus vulgaris HOM05D004022 ORTHO05D004090 6.0e-09 64.3 85 42.4
Sc03g0007740 Simmondsia chinensis HOM05D004022 ORTHO05D004090 6.0e-09 64.3 88 43.2
Cpa.g.sc2579.1 Carica papaya HOM05D004022 ORTHO05D004090 1.0e-08 63.5 100 42.0
Glyma.15G249800 Glycine max HOM05D004022 ORTHO05D004090 1.0e-08 63.5 89 41.6
Peaxi162Scf00111g00083 Petunia axillaris HOM05D004022 ORTHO05D004090 1.3e-08 63.2 99 36.4
Nn3g20789 Nelumbo nucifera HOM05D004022 ORTHO05D004090 2.3e-08 62.4 101 38.6
Nn3g20790 Nelumbo nucifera HOM05D004022 ORTHO05D004090 2.3e-08 62.4 101 38.6
Glyma.08G176500 Glycine max HOM05D004022 ORTHO05D004090 3.0e-08 62.0 86 44.2
Nitab4.5_0001924g0010 Nicotiana tabacum HOM05D004022 ORTHO05D004090 3.9e-08 61.6 108 38.0
Potri.001G378300 Populus trichocarpa HOM05D004022 ORTHO05D004090 3.9e-08 61.6 117 34.2
PGSC0003DMG400027649 Solanum tuberosum HOM05D004022 ORTHO05D004090 3.9e-08 61.6 103 36.9
QL05p057789 Quercus lobata HOM05D004022 ORTHO05D004090 5.1e-08 61.2 119 34.5
Lalb_Chr25g0285381 Lupinus albus HOM05D004022 ORTHO05D004090 6.6e-08 60.8 98 40.8
Sabra16G0249100 Salix brachista HOM05D004022 ORTHO05D004090 6.6e-08 60.8 104 40.4
AUR62012877 Chenopodium quinoa HOM05D004022 ORTHO05D004090 8.6e-08 60.5 95 40.0
Eucgr.F01408 Eucalyptus grandis HOM05D004022 ORTHO05D004090 8.6e-08 60.5 97 39.2
CSS0036966 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 1.1e-07 60.1 99 39.4
Eucgr.F01407 Eucalyptus grandis HOM05D004022 ORTHO05D004090 1.1e-07 60.1 97 38.1
RhsimUnG0204300 Rhododendron simsii HOM05D004022 ORTHO05D004090 1.1e-07 60.1 44 61.4
Haze_08493 Corylus avellana HOM05D004022 ORTHO05D004090 1.5e-07 59.7 82 41.5
unitig_899.g15299 Utricularia gibba HOM05D004022 ORTHO05D004090 1.5e-07 59.7 90 38.9
Sopen07g029950 Solanum pennellii HOM05D004022 ORTHO05D004090 1.9e-07 59.3 101 37.6
DCAR_021057 Daucus carota HOM05D004022 ORTHO05D004090 2.5e-07 58.9 89 41.6
Migut.M00647 Erythranthe guttata HOM05D004022 ORTHO05D004090 2.5e-07 58.9 102 35.3
Atru.chr10.1218 Acer truncatum HOM05D004022 ORTHO05D004090 3.3e-07 58.5 107 38.3
EL10Ac9g22063 Beta vulgaris HOM05D004022 ORTHO05D004090 3.3e-07 58.5 47 63.8
COL.COLO4_17416 Corchorus olitorius HOM05D004022 ORTHO05D004090 3.3e-07 58.5 36 75.0
TPR.G2234 Trifolium pratense HOM05D004022 ORTHO05D004090 3.3e-07 58.5 91 40.7
Migut.M00648 Erythranthe guttata HOM05D004022 ORTHO05D004090 4.3e-07 58.2 104 37.5
Nitab4.5_0005080g0020 Nicotiana tabacum HOM05D004022 ORTHO05D004090 4.3e-07 58.2 103 36.9
Gohir.D01G029300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 5.6e-07 57.8 100 37.0
Gorai.002G038600 Gossypium raimondii HOM05D004022 ORTHO05D004090 5.6e-07 57.8 100 37.0
Solyc07g056600.1 Solanum lycopersicum HOM05D004022 ORTHO05D004090 5.6e-07 57.8 101 34.7
CAN.G904.20 Capsicum annuum HOM05D004022 ORTHO05D004090 7.3e-07 57.4 91 35.2
Ca_03390_v3 Cicer arietinum L. HOM05D004022 ORTHO05D004090 7.3e-07 57.4 91 42.9
ECA236G3547 Erigeron canadensis HOM05D004022 ORTHO05D004090 9.5e-07 57.0 96 35.4
MELO3C016156.2 Cucumis melo HOM05D004022 ORTHO05D004090 1.2e-06 56.6 84 44.0
SalBow8G0217 Salvia bowleyana HOM05D004022 ORTHO05D004090 1.2e-06 56.6 90 37.8
HanXRQChr15g0492271 Helianthus annuus HOM05D004022 ORTHO05D004090 1.6e-06 56.2 100 35.0
Nitab4.5_0000505g0120 Nicotiana tabacum HOM05D004022 ORTHO05D004090 1.6e-06 56.2 100 39.0
Thecc.06G149800 Theobroma cacao HOM05D004022 ORTHO05D004090 1.6e-06 56.2 103 40.8
TAR627G0510 Trochodendron aralioides HOM05D004022 ORTHO05D004090 2.1e-06 55.8 98 37.8
CSS0046120 Camellia sinensis var. sinensis HOM05D004022 ORTHO05D004090 2.8e-06 55.5 96 39.6
ClCG07G010500 Citrullus lanatus HOM05D004022 ORTHO05D004090 2.8e-06 55.5 84 44.0
ClCG07G010510 Citrullus lanatus HOM05D004022 ORTHO05D004090 2.8e-06 55.5 84 44.0
Gohir.A04G046900 Gossypium hirsutum HOM05D004022 ORTHO05D004090 2.8e-06 55.5 93 36.6
SalBow8G5432 Salvia bowleyana HOM05D004022 ORTHO05D004090 2.8e-06 55.5 90 36.7
COL.COLO4_31065 Corchorus olitorius HOM05D004022 ORTHO05D004090 3.6e-06 55.1 110 38.2
Duzib268G0389 Durio zibethinus HOM05D004022 ORTHO05D004090 3.6e-06 55.1 95 40.0
TPR.G26630 Trifolium pratense HOM05D004022 ORTHO05D004090 3.6e-06 55.1 91 38.5
Lsat_1_v5_gn_7_101361 Lactuca sativa HOM05D004022 ORTHO05D004090 4.7e-06 54.7 98 38.8
Gohir.D05G333300 Gossypium hirsutum HOM05D004022 ORTHO05D004090 6.2e-06 54.3 88 37.5
Lj3g0000459 Lotus japonicus HOM05D004022 ORTHO05D004090 6.2e-06 54.3 93 35.5
Manes.15G122000 Manihot esculenta HOM05D004022 ORTHO05D004090 6.2e-06 54.3 118 32.2
Cfa019453 Carpinus fangiana HOM05D004022 ORTHO05D004090 8.1e-06 53.9 83 39.8
CsaV3_4G007830 Cucumis sativus L. HOM05D004022 ORTHO05D004090 8.1e-06 53.9 84 41.7
HanXRQChr11g0330361 Helianthus annuus HOM05D004022 ORTHO05D004090 8.1e-06 53.9 34 73.5
Potri.011G095900 Populus trichocarpa HOM05D004022 ORTHO05D004090 8.1e-06 53.9 108 36.1


User provided reference genes

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