Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p12720 Brassica napus HOM05D007364 ORTHO05D009275 1.9e-75 285.8 152 100.0
BraA06t24432Z Brassica rapa HOM05D007364 ORTHO05D009275 7.4e-75 283.9 152 99.3
C05p15020 Brassica napus HOM05D007364 ORTHO05D009275 2.5e-70 268.9 152 95.4
BolC5t30217H Brassica oleracea HOM05D007364 ORTHO05D009275 2.1e-69 265.8 152 94.1
Sp1g14930 Schrenkiella parvula HOM05D007364 ORTHO05D009275 1.4e-62 243.0 152 88.2
Thhalv10009015m.g Eutrema salsugineum HOM05D007364 ORTHO05D009275 2.1e-61 239.2 152 86.8
BcaC07g38817 Brassica carinata HOM05D007364 ORTHO05D009275 2.7e-61 238.8 153 86.9
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 6.1e-61 237.7 153 86.9
AL1G28960 Arabidopsis lyrata HOM05D007364 ORTHO05D009275 7.4e-59 230.7 152 84.2
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 1.6e-58 229.6 144 87.5
AT1G16790 Arabidopsis thaliana HOM05D007364 ORTHO05D009275 3.7e-58 228.4 152 83.6
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 3.7e-58 228.4 144 87.5
CARHR017250 Cardamine hirsuta HOM05D007364 ORTHO05D009275 1.8e-57 226.1 152 82.9
Carub.0001s1652 Capsella rubella HOM05D007364 ORTHO05D009275 6.9e-57 224.2 150 82.7
BcaB03g13030 Brassica carinata HOM05D007364 ORTHO05D009275 2.6e-56 222.2 153 82.4
Aa31LG7G1240 Aethionema arabicum HOM05D007364 ORTHO05D009275 1.1e-54 216.9 152 78.9
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 1.4e-52 209.9 137 86.1
THA.LOC104812333 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 3.0e-52 208.8 152 75.7
BcaC05g25538 Brassica carinata HOM05D007364 ORTHO05D009275 9.7e-43 177.2 125 84.0
BcaB02g06675 Brassica carinata HOM05D007364 ORTHO05D009275 1.3e-39 166.8 93 96.8
THA.LOC104808105 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 5.2e-36 154.8 143 64.3
Manes.14G008700 Manihot esculenta HOM05D007364 ORTHO05D009275 8.2e-34 147.5 148 56.8
Gohir.D05G115800 Gossypium hirsutum HOM05D007364 ORTHO05D009275 1.1e-33 147.1 150 52.0
Gorai.009G119800 Gossypium raimondii HOM05D007364 ORTHO05D009275 3.1e-33 145.6 150 51.3
TWI63G0101 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 3.1e-33 145.6 160 51.9
Atru.chr1.2614 Acer truncatum HOM05D007364 ORTHO05D009275 7.0e-33 144.4 150 54.7
Thecc.06G054700 Theobroma cacao HOM05D007364 ORTHO05D009275 7.0e-33 144.4 150 52.7
Gohir.A05G115400 Gossypium hirsutum HOM05D007364 ORTHO05D009275 1.2e-32 143.7 150 51.3
TWI38G2254 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 2.7e-32 142.5 162 51.9
Duzib235G1177 Durio zibethinus HOM05D007364 ORTHO05D009275 2.9e-31 139.0 151 51.0
Potri.010G254100 Populus trichocarpa HOM05D007364 ORTHO05D009275 8.5e-31 137.5 152 52.0
Ciclev10013953m.g Citrus clementina HOM05D007364 ORTHO05D009275 1.6e-29 133.3 152 48.7
Haze_16200 Corylus avellana HOM05D007364 ORTHO05D009275 4.7e-29 131.7 149 51.0
Cfa003431 Carpinus fangiana HOM05D007364 ORTHO05D009275 6.1e-29 131.3 149 51.0
arahy.Tifrunner.gnm1.ann1.TFQ65X Arachis hypogaea HOM05D007364 ORTHO05D009275 1.2e-27 127.1 147 51.7
arahy.Tifrunner.gnm1.ann1.A7U39C Arachis hypogaea HOM05D007364 ORTHO05D009275 2.6e-27 125.9 147 51.0
Lj4g0012611 Lotus japonicus HOM05D007364 ORTHO05D009275 1.3e-26 123.6 115 58.3
COL.COLO4_38285 Corchorus olitorius HOM05D007364 ORTHO05D009275 3.7e-26 122.1 103 56.3
Glyma.08G130400 Glycine max HOM05D007364 ORTHO05D009275 4.8e-26 121.7 127 55.9
MD09G1166600 Malus domestica HOM05D007364 ORTHO05D009275 6.3e-26 121.3 153 46.4
ClCG07G014710 Citrullus lanatus HOM05D007364 ORTHO05D009275 8.3e-26 120.9 147 49.0
Glyma.05G173100 Glycine max HOM05D007364 ORTHO05D009275 1.8e-25 119.8 135 52.6
VMungo0251G1224 Vigna mungo HOM05D007364 ORTHO05D009275 2.4e-25 119.4 136 53.7
Ah.15g094280 Amaranthus hybridus HOM05D007364 ORTHO05D009275 3.1e-25 119.0 149 43.0
Prupe.3G024300 Prunus persica HOM05D007364 ORTHO05D009275 3.1e-25 119.0 152 46.7
TAR636G2112 Trochodendron aralioides HOM05D007364 ORTHO05D009275 3.1e-25 119.0 146 47.3
TAR625G0136 Trochodendron aralioides HOM05D007364 ORTHO05D009275 7.0e-25 117.9 146 47.3
CANSAT78G1269 Cannabis sativa HOM05D007364 ORTHO05D009275 1.2e-24 117.1 129 51.9
FvH4_6g36820 Fragaria vesca HOM05D007364 ORTHO05D009275 1.6e-24 116.7 144 47.9
FAN02G1908 Fragaria x ananassa HOM05D007364 ORTHO05D009275 1.6e-24 116.7 144 47.9
FAN14G5026 Fragaria x ananassa HOM05D007364 ORTHO05D009275 1.6e-24 116.7 144 47.9
Eucgr.J03185 Eucalyptus grandis HOM05D007364 ORTHO05D009275 2.0e-24 116.3 152 46.7
Ca_17791_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 4.5e-24 115.2 146 48.6
Ca_29552_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 4.5e-24 115.2 146 48.6
FAN05G2474 Fragaria x ananassa HOM05D007364 ORTHO05D009275 4.5e-24 115.2 144 48.6
RcHm_v2.0_Chr2g0149211 Rosa chinensis HOM05D007364 ORTHO05D009275 5.9e-24 114.8 144 47.9
MELO3C010416.2 Cucumis melo HOM05D007364 ORTHO05D009275 7.7e-24 114.4 146 47.9
Phvul.002G258200 Phaseolus vulgaris HOM05D007364 ORTHO05D009275 7.7e-24 114.4 138 51.4
Aqoxy5G03758 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 1.3e-23 113.6 120 50.0
QL05p088447 Quercus lobata HOM05D007364 ORTHO05D009275 1.3e-23 113.6 140 47.1
TPR.G6288 Trifolium pratense HOM05D007364 ORTHO05D009275 1.7e-23 113.2 147 46.3
Sc15g0001160 Simmondsia chinensis HOM05D000912 ORTHO05D008392 2.9e-23 112.5 112 54.5
Psat7g058640 Pisum sativum HOM05D007364 ORTHO05D009275 5.0e-23 111.7 146 47.3
MBI16_g18204_MAGBIO Magnolia biondii HOM05D007364 ORTHO05D009275 6.5e-23 111.3 146 41.1
Lalb_Chr07g0185511 Lupinus albus HOM05D007364 ORTHO05D009275 8.5e-23 110.9 158 43.7
AUR62001324 Chenopodium quinoa HOM05D007364 ORTHO05D009275 2.5e-22 109.4 154 39.6
PGR031G1732 Punica granatum HOM05D007364 ORTHO05D009275 4.2e-22 108.6 145 46.2
Atru.chr2.3597 Acer truncatum HOM05D007364 ORTHO05D009275 2.1e-21 106.3 67 68.7
EL10Ac7g18129 Beta vulgaris HOM05D007364 ORTHO05D009275 1.4e-20 103.6 152 40.8
FAN09G0058 Fragaria x ananassa HOM05D007364 ORTHO05D009275 1.4e-20 103.6 133 48.9
Nitab4.5_0011805g0010 Nicotiana tabacum HOM05D007364 ORTHO05D009275 1.8e-20 103.2 134 42.5
AUR62025707 Chenopodium quinoa HOM05D007364 ORTHO05D009275 4.0e-20 102.1 155 38.7
PGSC0003DMG400004654 Solanum tuberosum HOM05D007364 ORTHO05D009275 4.0e-20 102.1 137 41.6
Peaxi162Scf00062g00099 Petunia axillaris HOM05D007364 ORTHO05D009275 5.2e-20 101.7 131 43.5
Hma1.2p1_0191F.1_g083440 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 1.2e-19 100.5 161 40.4
Hma1.2p1_3076F.1_g332395 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 1.2e-19 100.5 161 40.4
Sopen12g034580 Solanum pennellii HOM05D007364 ORTHO05D009275 2.6e-19 99.4 127 43.3
Sed0001602 Sechium edule HOM05D007364 ORTHO05D009275 3.4e-19 99.0 108 50.9
PSO063G5199 Papaver somniferum HOM05D007364 ORTHO05D009275 7.5e-19 97.8 146 39.7
Aqoxy2G03840 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 1.3e-18 97.1 100 50.0
CAN.G484.12 Capsicum annuum HOM05D007364 ORTHO05D009275 2.8e-18 95.9 137 41.6
Solyc12g099960.1 Solanum lycopersicum HOM05D007364 ORTHO05D009275 6.3e-18 94.7 158 38.6
Actinidia21894 Actinidia chinensis HOM05D007364 ORTHO05D009275 8.3e-18 94.4 125 45.6
Cc09_g07400 Coffea canephora HOM05D007364 ORTHO05D009275 1.1e-17 94.0 152 42.1
Lsat_1_v5_gn_4_106261 Lactuca sativa HOM05D007364 ORTHO05D009275 1.6e-16 90.1 133 39.8
PSO170G0377 Papaver somniferum HOM05D007364 ORTHO05D009275 2.7e-16 89.4 112 45.5
CsaV3_4G028750 Cucumis sativus L. HOM05D007364 ORTHO05D009275 1.3e-15 87.0 110 49.1
Nitab4.5_0001925g0240 Nicotiana tabacum HOM05D007364 ORTHO05D009275 8.6e-15 84.3 116 41.4
DCAR_001424 Daucus carota HOM05D007364 ORTHO05D009275 1.5e-14 83.6 115 40.9
unitig_26.g10058 Utricularia gibba HOM05D007364 ORTHO05D009275 2.5e-14 82.8 141 39.0
Actinidia38815 Actinidia chinensis HOM05D007364 ORTHO05D009275 5.6e-14 81.6 127 41.7
CiPaw.01G207600 Carya illinoinensis HOM05D007364 ORTHO05D009275 3.6e-13 79.0 103 52.4
HanXRQChr04g0125291 Helianthus annuus HOM05D007364 ORTHO05D009275 1.4e-12 77.0 124 35.5
CiPaw.01G094100 Carya illinoinensis HOM05D007364 ORTHO05D009275 2.3e-12 76.3 106 44.3
Lj9P543T41 Lonicera japonica HOM05D007364 ORTHO05D009275 5.2e-12 75.1 99 42.4
HPP92_017109 Vanilla planifolia HOM05D007364 ORTHO05D009275 5.7e-11 71.6 149 34.2
SalBow6G2338 Salvia bowleyana HOM05D007364 ORTHO05D009275 2.2e-10 69.7 109 37.6
Mapoly0061s0135 Marchantia polymorpha HOM05D007364 ORTHO05D009275 2.9e-10 69.3 124 36.3
SGA_v2.0_scaffold71G23970 Striga asiatica HOM05D007364 ORTHO05D009275 2.9e-10 69.3 139 35.3
HPP92_017099 Vanilla planifolia HOM05D007364 ORTHO05D009275 2.9e-10 69.3 150 34.7
Migut.I01209 Erythranthe guttata HOM05D007364 ORTHO05D009275 1.1e-09 67.4 137 32.1
Oeu047568.2 Olea europaea HOM05D007364 ORTHO05D009275 1.4e-09 67.0 104 36.5
ECA232G2752 Erigeron canadensis HOM05D007364 ORTHO05D009275 2.4e-09 66.2 106 36.8
LjContig00484g0025496 Lotus japonicus HOM05D007364 ORTHO05D009275 7.0e-09 64.7 80 50.0
AUR62015398 Chenopodium quinoa HOM05D007364 ORTHO05D009275 2.5e-06 56.2 58 37.9
AUR62040375 Chenopodium quinoa HOM05D007364 ORTHO05D009275 2.5e-06 56.2 58 37.9


User provided reference genes

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