Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 1.4e-130 469.5 232 100.0
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 3.4e-124 448.4 233 95.7
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 3.5e-116 421.8 234 89.3
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 1.0e-115 420.2 234 88.9
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 1.1e-114 416.8 232 85.8
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 7.2e-114 414.1 235 88.5
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 4.1e-109 398.3 229 83.4
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 4.1e-109 398.3 233 83.3
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 5.0e-107 391.3 225 83.1
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 1.1e-106 390.2 232 81.5
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 1.1e-106 390.2 232 81.5
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 1.9e-106 389.4 232 81.0
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 1.9e-106 389.4 232 81.0
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 2.5e-106 389.0 233 81.1
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 2.5e-106 389.0 225 82.7
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 1.2e-105 386.7 233 80.3
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 6.3e-102 374.4 233 78.5
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 2.4e-101 372.5 233 79.8
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 2.4e-101 372.5 234 79.9
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.7e-100 369.0 254 72.4
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 1.1e-98 363.6 233 78.1
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 1.0e-96 357.1 232 75.4
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 2.1e-89 332.8 246 71.1
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 5.2e-88 328.2 230 68.3
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 1.0e-83 313.9 214 71.5
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 3.9e-83 312.0 231 64.9
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 3.1e-72 275.8 221 59.7
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 6.4e-70 268.1 204 58.3
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 1.1e-69 267.3 214 56.5
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 1.1e-69 267.3 214 57.0
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.4e-69 266.9 221 55.7
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 1.9e-69 266.5 235 54.0
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 4.1e-69 265.4 220 55.5
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 6.0e-68 261.5 230 53.5
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 7.8e-68 261.2 201 58.2
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 7.8e-68 261.2 229 56.8
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 1.3e-67 260.4 201 61.2
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 2.3e-67 259.6 221 54.8
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 2.3e-67 259.6 203 58.1
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 3.0e-67 259.2 229 56.3
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 3.0e-67 259.2 225 56.9
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 8.6e-67 257.7 203 57.1
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 1.5e-66 256.9 229 53.3
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 2.5e-66 256.1 209 54.5
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 2.5e-66 256.1 211 54.5
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 3.3e-66 255.8 230 54.8
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 4.3e-66 255.4 204 57.4
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 4.3e-66 255.4 224 54.5
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 9.5e-66 254.2 212 57.1
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 1.6e-65 253.4 210 54.8
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.1e-65 253.1 230 53.0
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 2.1e-65 253.1 219 55.3
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 3.6e-65 252.3 225 56.9
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 1.1e-64 250.8 205 59.5
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 1.1e-64 250.8 220 55.5
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.4e-64 250.4 210 55.2
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 3.1e-64 249.2 209 56.0
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 4.0e-64 248.8 221 56.6
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 4.0e-64 248.8 228 51.8
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 6.8e-64 248.1 206 57.3
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 8.9e-64 247.7 210 54.8
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.2e-63 247.3 210 53.8
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 1.2e-63 247.3 221 54.8
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 2.0e-63 246.5 197 55.3
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 2.0e-63 246.5 206 55.8
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 5.8e-63 245.0 200 56.5
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 7.6e-63 244.6 203 56.7
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 7.6e-63 244.6 196 56.6
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 9.9e-63 244.2 195 56.9
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 1.3e-62 243.8 223 56.1
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.3e-62 243.8 235 51.1
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 3.8e-62 242.3 222 50.5
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 6.4e-62 241.5 203 58.6
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 6.4e-62 241.5 200 56.0
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 8.4e-62 241.1 206 52.4
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 8.4e-62 241.1 229 51.5
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 1.9e-61 240.0 196 55.6
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 5.4e-61 238.4 200 54.5
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 7.1e-61 238.0 223 49.8
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 1.2e-60 237.3 215 53.5
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.6e-60 236.9 219 50.7
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 6.0e-60 235.0 204 52.5
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 6.0e-60 235.0 223 49.8
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 1.3e-59 233.8 189 56.1
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 3.0e-59 232.6 200 54.0
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 3.0e-59 232.6 224 47.8
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 3.9e-59 232.3 225 47.1
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 3.9e-59 232.3 224 47.8
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 8.7e-59 231.1 210 51.4
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 1.1e-58 230.7 224 47.3
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.5e-58 230.3 212 51.4
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 2.5e-58 229.6 197 53.3
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 5.6e-58 228.4 206 51.9
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 7.3e-58 228.0 174 57.5
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.2e-57 227.3 219 49.3
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 2.8e-57 226.1 210 51.4
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 3.6e-57 225.7 231 49.8
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 3.1e-56 222.6 202 54.0
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 5.2e-56 221.9 179 59.8
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.7e-54 216.9 210 50.0
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 2.9e-54 216.1 219 47.9
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 8.4e-54 214.5 197 48.2
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 2.4e-53 213.0 187 53.5
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 1.2e-52 210.7 219 47.0
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.1e-52 209.9 244 47.1
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 4.6e-52 208.8 167 53.9
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 3.0e-51 206.1 226 48.7
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 3.9e-51 205.7 191 51.8
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 1.9e-50 203.4 187 49.7
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 2.1e-49 199.9 191 50.8
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 2.8e-49 199.5 203 49.3
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 1.1e-48 197.6 212 48.1
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 9.0e-48 194.5 196 51.5
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 1.2e-47 194.1 183 48.1
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 7.6e-47 191.4 161 55.3
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 7.6e-47 191.4 233 45.9
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 1.7e-46 190.3 175 49.1
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 3.2e-45 186.0 127 63.0
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 1.6e-44 183.7 192 47.9
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 3.9e-43 179.1 203 42.9
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 5.1e-43 178.7 239 41.4
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.3e-41 174.1 209 45.0
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.8e-41 172.9 200 46.5
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 6.9e-40 168.3 262 42.0
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 2.0e-39 166.8 202 41.1
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 7.6e-39 164.9 184 42.9
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 3.8e-38 162.5 114 63.2
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 6.4e-38 161.8 106 66.0
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 2.1e-33 146.7 151 53.6
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 2.6e-31 139.8 128 47.7
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 9.7e-26 121.3 135 45.9
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 6.3e-25 118.6 53 92.5
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 3.1e-24 116.3 92 53.3
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 6.9e-24 115.2 126 46.8
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 1.5e-23 114.0 67 74.6
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 6.7e-19 98.6 58 63.8
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 5.3e-16 89.0 59 62.7
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 2.0e-15 87.0 61 54.1
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 7.7e-15 85.1 73 49.3
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 1.0e-14 84.7 56 62.5
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 7.2e-13 78.6 85 47.1
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 9.4e-13 78.2 97 47.4
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 3.6e-12 76.3 95 46.3
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 3.0e-11 73.2 147 29.3
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 8.8e-11 71.6 97 43.3
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 2.0e-10 70.5 52 59.6
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 2.8e-09 66.6 49 57.1
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 3.7e-09 66.2 70 45.7
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 8.2e-09 65.1 51 56.9
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 8.2e-09 65.1 158 27.8
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 2.9e-06 56.6 31 64.5
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 6.5e-06 55.5 76 46.1


User provided reference genes

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