Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 1.2e-218 763.1 422 100.0
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 4.8e-217 757.7 422 99.3
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 2.3e-211 738.8 428 96.0
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 1.2e-210 736.5 428 95.8
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 5.6e-157 558.1 456 75.2
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 2.7e-143 512.7 456 69.7
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 8.7e-134 481.1 439 66.1
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 1.4e-128 463.8 433 64.2
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 3.2e-128 462.6 435 64.1
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.7e-127 459.5 445 62.7
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 6.7e-126 454.9 438 61.2
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 1.7e-124 450.3 426 64.8
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 2.2e-124 449.9 426 64.6
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 7.7e-122 441.4 424 62.7
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 2.9e-121 439.5 439 61.7
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 3.4e-93 346.3 459 51.4
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 3.4e-93 346.3 447 50.6
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 1.3e-92 344.4 432 50.9
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 1.7e-92 344.0 438 50.2
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 4.8e-92 342.4 441 49.9
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 8.3e-92 341.7 433 50.8
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 1.1e-91 341.3 439 49.7
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 4.1e-91 339.3 441 49.7
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 5.4e-91 339.0 449 52.8
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 9.1e-91 338.2 430 50.5
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 9.1e-91 338.2 467 53.3
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 2.7e-90 336.7 430 50.2
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 1.3e-89 334.3 447 49.0
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 3.3e-88 329.7 429 49.9
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 1.2e-87 327.8 441 52.2
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 4.7e-87 325.9 450 50.0
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 1.4e-86 324.3 455 49.0
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 6.8e-86 322.0 427 49.4
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 1.1e-83 314.7 457 46.8
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 4.1e-83 312.8 469 48.2
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 7.0e-83 312.0 456 46.7
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 9.2e-83 311.6 398 51.3
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 1.6e-82 310.8 411 50.1
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 1.5e-80 304.3 403 48.6
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 3.3e-80 303.1 474 49.8
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 3.3e-80 303.1 408 46.8
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 2.3e-78 297.0 408 49.8
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 3.0e-78 296.6 375 50.4
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 3.0e-78 296.6 404 48.0
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 1.5e-77 294.3 458 46.7
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 2.0e-77 293.9 379 49.6
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 2.6e-77 293.5 425 47.5
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 3.4e-77 293.1 457 46.6
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 5.8e-77 292.4 467 47.8
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 7.5e-77 292.0 363 50.4
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 7.5e-77 292.0 423 47.3
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 9.8e-77 291.6 416 46.2
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 2.2e-76 290.4 457 45.7
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 4.9e-76 289.3 458 46.3
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 7.0e-75 285.4 413 46.7
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 9.2e-75 285.0 413 45.3
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 7.8e-74 282.0 469 46.3
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 3.0e-73 280.0 437 48.5
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 3.0e-73 280.0 478 42.3
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 8.6e-73 278.5 448 48.2
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.5e-72 277.7 446 45.7
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 1.9e-72 277.3 458 44.8
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 5.6e-72 275.8 380 47.4
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 9.5e-72 275.0 388 46.1
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 1.6e-71 274.2 472 44.1
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 2.8e-71 273.5 398 44.0
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 3.6e-71 273.1 446 46.2
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 3.6e-71 273.1 446 46.0
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 8.0e-71 271.9 329 48.6
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 1.1e-70 271.6 353 47.0
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 1.4e-70 271.2 243 61.3
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 8.9e-70 268.5 444 44.8
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 4.4e-69 266.2 387 47.0
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 4.4e-69 266.2 387 47.0
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 1.7e-68 264.2 434 42.6
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 8.3e-68 261.9 510 44.7
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 8.3e-68 261.9 496 44.6
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 3.2e-67 260.0 405 44.2
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 3.2e-67 260.0 386 43.0
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 7.0e-67 258.8 486 40.3
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 1.6e-66 257.7 398 43.0
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 6.0e-66 255.8 412 43.0
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 6.0e-66 255.8 346 48.8
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 1.7e-65 254.2 383 43.9
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 1.7e-65 254.2 363 47.9
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 2.3e-65 253.8 409 42.1
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 8.6e-65 251.9 346 45.1
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 3.3e-64 250.0 627 38.0
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 3.3e-64 250.0 345 47.5
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 5.6e-64 249.2 374 43.9
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 7.3e-64 248.8 349 45.8
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.2e-63 248.1 428 45.6
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 1.2e-63 248.1 435 44.8
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 3.6e-63 246.5 355 47.6
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 3.6e-63 246.5 448 41.7
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 8.1e-63 245.4 235 59.1
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 8.1e-63 245.4 338 47.0
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 1.1e-62 245.0 366 43.4
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 2.3e-62 243.8 204 64.2
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 8.9e-62 241.9 409 39.9
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 8.9e-62 241.9 416 41.8
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 2.0e-61 240.7 346 46.0
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 2.6e-61 240.4 399 41.9
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 4.4e-61 239.6 414 40.3
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 5.8e-61 239.2 415 41.2
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 4.9e-60 236.1 418 39.5
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 8.3e-60 235.3 396 43.7
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 1.1e-59 235.0 424 41.0
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 2.5e-56 223.8 377 41.9
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 5.6e-56 222.6 413 40.4
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 4.7e-55 219.5 213 58.2
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 6.2e-55 219.2 404 39.6
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 8.1e-55 218.8 403 40.0
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 1.1e-54 218.4 374 42.2
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 1.4e-54 218.0 350 40.9
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 1.8e-54 217.6 343 42.0
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.0e-54 216.5 236 51.7
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 2.6e-53 213.8 427 40.3
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 7.6e-53 212.2 130 80.0
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 8.4e-52 208.8 425 37.6
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 1.1e-51 208.4 344 42.2
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.7e-50 203.8 114 88.6
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 2.3e-49 200.7 203 54.7
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 7.3e-48 195.7 474 35.7
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 7.3e-48 195.7 474 35.7
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 2.1e-47 194.1 420 38.3
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 4.7e-47 193.0 204 53.4
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 4.0e-46 189.9 255 50.2
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 1.2e-45 188.3 374 38.2
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.9e-44 183.0 133 69.9
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 4.9e-44 183.0 133 69.9
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 3.5e-42 176.8 101 84.2
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 6.0e-42 176.0 284 41.9
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 1.2e-37 161.8 113 75.2
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 6.4e-36 156.0 97 76.3
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 4.2e-35 153.3 363 36.6
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 1.5e-32 144.8 76 93.4
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 4.3e-32 143.3 123 53.7
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 4.8e-31 139.8 114 60.5
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 5.5e-27 126.3 252 38.1
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 3.0e-25 120.6 66 87.9
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 7.4e-24 115.9 113 53.1
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 4.5e-21 106.7 291 36.8
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 3.2e-19 100.5 328 31.7
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 9.3e-19 99.0 66 72.7
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 6.0e-18 96.3 88 58.0
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 1.3e-17 95.1 106 50.0
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 5.1e-17 93.2 63 73.0
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 3.3e-16 90.5 305 34.1
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 4.3e-16 90.1 105 46.7
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 7.4e-16 89.4 56 80.4
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 4.5e-13 80.1 92 50.0
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 4.5e-13 80.1 246 31.3
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 8.5e-12 75.9 37 91.9
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 5.1e-09 66.6 258 30.2
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 2.0e-08 64.7 37 70.3
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 7.4e-08 62.8 50 60.0
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 2.8e-07 60.8 67 52.2
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 3.7e-07 60.5 103 35.0
Ca_29111_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 6.3e-07 59.7 66 50.0
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 8.2e-07 59.3 105 32.4
Cre06.g264300 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 4.1e-06 57.0 83 42.2


User provided reference genes

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