Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 0.0e+00 1282.3 712 100.0
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 0.0e+00 1180.2 719 93.3
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 0.0e+00 1135.2 713 91.7
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 0.0e+00 1134.8 717 91.4
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 1.4e-306 1055.8 667 91.2
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 2.0e-255 885.9 745 74.8
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 1.9e-229 799.7 738 68.3
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 9.3e-229 797.3 739 67.7
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 3.8e-182 642.5 752 58.1
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 9.1e-168 594.7 748 57.2
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 2.5e-165 586.6 748 57.6
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 1.8e-160 570.5 749 57.1
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.2e-148 531.2 768 50.7
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 8.9e-147 525.0 753 47.8
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 3.3e-133 479.9 763 49.7
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 2.5e-88 330.9 623 43.8
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 2.5e-64 251.1 468 42.7
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 2.1e-63 248.1 728 33.5
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 4.7e-63 246.9 754 32.0
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 3.4e-61 240.7 755 31.9
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 2.4e-59 234.6 761 33.1
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 3.1e-59 234.2 764 31.3
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 4.1e-59 233.8 734 31.3
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 5.9e-58 229.9 772 31.6
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 5.9e-58 229.9 745 32.1
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 7.7e-58 229.6 821 29.7
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 8.5e-57 226.1 760 31.3
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 2.1e-55 221.5 865 28.7
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 2.7e-55 221.1 869 30.3
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 2.3e-54 218.0 758 29.9
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 8.8e-54 216.1 788 30.5
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 1.5e-53 215.3 752 29.3
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 2.2e-52 211.5 732 30.9
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 6.3e-52 209.9 735 31.4
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 6.3e-52 209.9 739 30.0
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 6.3e-52 209.9 739 30.0
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 1.1e-51 209.1 779 29.9
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 3.1e-51 207.6 758 30.1
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 7.0e-51 206.5 738 30.4
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 1.6e-50 205.3 755 29.4
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 1.0e-49 202.6 766 29.2
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 1.3e-49 202.2 908 28.6
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 1.7e-49 201.8 773 29.8
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 2.9e-49 201.1 849 27.9
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 3.8e-49 200.7 796 29.1
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 8.6e-49 199.5 836 27.9
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 8.6e-49 199.5 756 29.5
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 2.1e-47 194.9 774 29.1
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 2.1e-47 194.9 743 29.3
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 1.0e-46 192.6 809 28.2
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 8.9e-46 189.5 742 31.7
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 1.2e-45 189.1 724 28.5
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 2.6e-45 188.0 657 30.7
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 3.2e-43 181.0 720 27.9
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 7.0e-43 179.9 648 30.9
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 1.6e-42 178.7 761 28.5
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.0e-42 178.3 657 30.4
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 4.6e-42 177.2 828 28.5
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 5.9e-42 176.8 748 28.1
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 1.0e-41 176.0 738 27.5
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 1.1e-40 172.6 750 29.9
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 7.3e-40 169.9 860 27.8
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 2.1e-39 168.3 913 25.6
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 2.8e-39 167.9 688 29.5
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 3.6e-39 167.5 687 29.1
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 4.7e-39 167.2 758 29.0
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 8.0e-39 166.4 728 28.6
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 1.0e-38 166.0 696 29.3
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 2.3e-38 164.9 717 27.6
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 5.8e-37 160.2 756 27.8
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 7.5e-37 159.8 174 55.2
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 9.8e-37 159.5 783 28.1
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 9.8e-37 159.5 780 28.6
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 1.3e-36 159.1 782 28.4
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 2.9e-36 157.9 655 29.2
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 2.9e-36 157.9 666 28.8
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 6.4e-36 156.8 711 28.1
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 1.1e-35 156.0 756 27.6
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 1.9e-35 155.2 752 27.9
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 1.2e-34 152.5 735 28.3
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 1.2e-34 152.5 701 27.1
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 4.6e-34 150.6 745 27.0
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 7.8e-34 149.8 780 26.5
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 1.3e-33 149.1 799 26.4
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 2.3e-33 148.3 681 27.8
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 3.0e-33 147.9 348 33.0
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 6.6e-33 146.7 934 25.2
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 2.5e-32 144.8 326 36.8
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 1.6e-31 142.1 708 27.8
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 4.0e-30 137.5 719 28.9
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 1.2e-29 136.0 793 25.2
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.5e-29 135.6 771 26.5
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 2.0e-29 135.2 938 26.9
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 5.8e-29 133.7 794 25.6
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.3e-28 132.5 759 26.5
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 1.9e-27 128.6 740 26.2
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 3.2e-27 127.9 743 26.8
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 4.1e-27 127.5 95 67.4
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 3.5e-26 124.4 573 27.4
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 1.3e-25 122.5 87 70.1
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 1.7e-25 122.1 753 26.4
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 2.3e-25 121.7 795 24.4
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 3.9e-25 120.9 363 31.1
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 5.1e-25 120.6 327 33.0
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 5.1e-25 120.6 574 28.2
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 8.6e-25 119.8 332 34.6
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 7.3e-24 116.7 424 29.0
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 9.5e-24 116.3 791 25.2
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 1.2e-23 115.9 712 26.5
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 1.2e-23 115.9 95 64.2
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 2.1e-23 115.2 802 24.8
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 4.7e-23 114.0 942 23.4
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 8.1e-23 113.2 722 26.6
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 1.4e-22 112.5 750 27.2
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 1.4e-22 112.5 929 24.4
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 5.2e-22 110.5 104 58.7
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 8.9e-22 109.8 959 23.8
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 1.5e-21 109.0 649 29.3
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 2.0e-21 108.6 707 25.9
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 2.0e-21 108.6 95 63.2
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 4.4e-21 107.5 639 26.3
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.3e-20 105.9 85 62.4
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 1.1e-19 102.8 88 55.7
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 5.4e-19 100.5 88 59.1
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 6.0e-18 97.1 756 22.8
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 6.0e-18 97.1 94 57.4
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 3.0e-17 94.7 97 54.6
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 6.6e-17 93.6 97 54.6
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 3.3e-16 91.3 623 26.3
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 4.3e-16 90.9 741 25.0
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 6.2e-15 87.0 85 52.9
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 8.1e-15 86.7 84 52.4
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 3.4e-13 81.3 96 50.0
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 5.8e-13 80.5 188 33.0
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 1.3e-12 79.3 84 47.6
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 1.4e-11 75.9 656 24.5
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 1.9e-11 75.5 44 72.7
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 4.2e-11 74.3 735 24.8
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 2.1e-10 72.0 84 41.7
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 6.6e-09 67.0 597 24.6
MCO08G035 Micromonas commoda HOM05D004831 ORTHO05D003975 2.1e-07 62.0 69 49.3
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 8.1e-07 60.1 161 28.6
Cre02.g079250 Chlamydomonas reinhardtii HOM05D004831 ORTHO05D003975 1.1e-06 59.7 63 49.2


User provided reference genes

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