Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 2.0e-110 402.5 209 100.0
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 2.4e-92 342.4 182 98.4
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 1.7e-82 309.7 209 82.8
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 6.8e-79 297.7 161 98.8
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 8.9e-79 297.4 158 97.5
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 2.0e-78 296.2 158 98.7
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 2.0e-78 296.2 158 98.7
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 7.5e-78 294.3 158 97.5
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 7.5e-78 294.3 158 97.5
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 7.0e-76 287.7 158 94.9
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 5.9e-75 284.6 158 89.9
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 1.9e-73 279.6 158 89.2
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 3.3e-73 278.9 158 88.6
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 9.5e-73 277.3 158 88.6
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 1.4e-71 273.5 141 97.9
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 1.8e-71 273.1 158 86.7
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 2.8e-64 249.2 160 78.1
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 4.6e-59 231.9 124 100.0
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 2.3e-58 229.6 159 70.4
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 3.0e-58 229.2 158 70.3
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 1.9e-57 226.5 157 70.1
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 1.9e-57 226.5 157 70.1
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 2.5e-57 226.1 156 70.5
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 2.5e-57 226.1 141 75.9
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 3.3e-57 225.7 157 71.3
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 4.3e-57 225.3 157 70.7
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 5.6e-57 224.9 156 69.2
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 7.3e-57 224.6 141 75.9
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 9.5e-57 224.2 156 69.9
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 9.5e-57 224.2 157 69.4
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 9.5e-57 224.2 157 68.8
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.2e-56 223.8 158 70.9
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 1.2e-56 223.8 156 69.2
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 1.2e-56 223.8 156 69.2
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 1.2e-56 223.8 141 75.2
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.2e-56 223.8 157 69.4
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 2.1e-56 223.0 159 69.8
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 2.1e-56 223.0 141 75.2
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 2.8e-56 222.6 156 69.9
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.8e-56 222.6 141 75.2
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 2.8e-56 222.6 141 75.9
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 2.8e-56 222.6 156 69.2
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 3.6e-56 222.2 161 67.7
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 3.6e-56 222.2 159 70.4
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 3.6e-56 222.2 156 68.6
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 3.6e-56 222.2 161 68.9
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 4.7e-56 221.9 157 72.0
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 4.7e-56 221.9 139 76.3
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 4.7e-56 221.9 156 69.2
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 8.1e-56 221.1 141 74.5
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 8.1e-56 221.1 157 69.4
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 8.1e-56 221.1 160 69.4
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 1.4e-55 220.3 156 69.2
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 1.4e-55 220.3 141 75.9
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 1.4e-55 220.3 141 74.5
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 1.8e-55 219.9 141 74.5
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 2.3e-55 219.5 152 69.7
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 2.3e-55 219.5 152 69.7
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 2.3e-55 219.5 141 75.9
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 2.3e-55 219.5 139 74.8
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 3.1e-55 219.2 157 68.8
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 4.0e-55 218.8 156 68.6
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 5.2e-55 218.4 157 68.2
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 5.2e-55 218.4 159 67.9
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 5.2e-55 218.4 141 72.3
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 5.2e-55 218.4 156 68.6
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 5.2e-55 218.4 141 73.0
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 1.5e-54 216.9 157 70.7
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 1.5e-54 216.9 157 68.2
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 1.5e-54 216.9 137 78.1
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 2.6e-54 216.1 158 67.1
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 3.4e-54 215.7 156 67.9
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 3.4e-54 215.7 157 68.2
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 3.4e-54 215.7 159 66.7
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 3.4e-54 215.7 159 66.7
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 4.4e-54 215.3 146 72.6
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 7.5e-54 214.5 158 69.6
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 7.5e-54 214.5 158 67.1
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 7.5e-54 214.5 157 70.1
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 1.3e-53 213.8 159 66.0
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 1.3e-53 213.8 158 65.8
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 1.3e-53 213.8 141 73.0
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 1.3e-53 213.8 141 71.6
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 1.7e-53 213.4 159 66.0
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 2.9e-53 212.6 150 70.0
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 4.9e-53 211.8 151 66.9
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 4.9e-53 211.8 141 71.6
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 8.3e-53 211.1 157 67.5
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 8.3e-53 211.1 157 68.8
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 8.3e-53 211.1 141 71.6
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 8.3e-53 211.1 156 65.4
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 8.3e-53 211.1 138 73.9
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 1.1e-52 210.7 141 70.9
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 1.4e-52 210.3 166 65.7
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 1.4e-52 210.3 157 69.4
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 1.9e-52 209.9 141 70.9
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 1.9e-52 209.9 141 70.2
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 3.2e-52 209.1 146 68.5
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 4.1e-52 208.8 141 69.5
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 5.4e-52 208.4 141 69.5
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 5.4e-52 208.4 157 66.2
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 9.2e-52 207.6 158 62.7
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 1.6e-51 206.8 138 71.0
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 1.6e-51 206.8 141 67.4
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 2.1e-51 206.5 141 70.2
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 2.7e-51 206.1 158 63.3
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 2.3e-50 203.0 158 61.4
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 3.9e-50 202.2 139 67.6
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 3.9e-50 202.2 158 63.9
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 5.1e-50 201.8 141 66.0
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 5.1e-50 201.8 160 64.4
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 5.1e-50 201.8 141 70.2
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 8.6e-50 201.1 157 63.7
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 1.1e-49 200.7 141 66.0
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 5.6e-49 198.4 157 61.8
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 2.4e-47 193.0 141 61.7
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 1.2e-46 190.7 179 55.9
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 1.5e-46 190.3 130 70.0
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 2.3e-42 176.4 186 51.6
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 1.9e-41 173.3 163 54.6
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 3.1e-39 166.0 157 56.1
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 4.0e-39 165.6 157 57.3
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 8.4e-37 157.9 127 58.3
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 1.1e-36 157.5 93 81.7
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 2.1e-35 153.3 111 65.8
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 7.8e-35 151.4 110 68.2
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 4.3e-33 145.6 136 52.9
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 4.8e-32 142.1 93 69.9
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 1.2e-30 137.5 139 49.6
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 2.9e-29 132.9 153 45.8
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 3.2e-28 129.4 87 70.1
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 1.6e-24 117.1 98 60.2
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 9.6e-17 91.3 114 44.7
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 5.3e-15 85.5 77 54.5
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 6.9e-15 85.1 114 43.0
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.1e-12 77.8 48 72.9
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 1.9e-12 77.0 50 76.0


User provided reference genes

Program Settings