Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 2.0e-61 238.8 111 100.0
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 1.1e-48 196.4 108 85.2
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 3.5e-42 174.9 99 83.8
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 3.4e-37 158.3 103 72.8
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 3.4e-37 158.3 103 72.8
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 1.7e-36 156.0 103 74.8
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 2.7e-34 148.7 97 74.2
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 4.8e-31 137.9 101 68.3
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 4.8e-31 137.9 68 83.8
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 6.2e-31 137.5 102 66.7
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 6.2e-31 137.5 102 66.7
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 1.1e-30 136.7 101 67.3
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 1.1e-30 136.7 101 67.3
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 1.8e-30 136.0 102 65.7
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 2.4e-30 135.6 68 85.3
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 2.4e-30 135.6 101 66.3
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 4.0e-30 134.8 64 89.1
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 6.9e-30 134.0 68 85.3
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 6.9e-30 134.0 68 85.3
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 1.2e-29 133.3 102 62.7
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 1.2e-29 133.3 60 95.0
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 1.5e-29 132.9 77 76.6
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 2.0e-29 132.5 101 65.3
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 2.0e-29 132.5 102 63.7
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 2.0e-29 132.5 60 95.0
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 4.5e-29 131.3 61 90.2
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 9.9e-29 130.2 60 91.7
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 9.9e-29 130.2 60 91.7
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 9.9e-29 130.2 60 91.7
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 9.9e-29 130.2 68 82.4
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 1.3e-28 129.8 61 90.2
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 1.3e-28 129.8 61 90.2
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 2.2e-28 129.0 108 61.1
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 2.2e-28 129.0 60 90.0
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 2.2e-28 129.0 60 90.0
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 2.2e-28 129.0 61 86.9
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 3.8e-28 128.3 60 91.7
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 4.9e-28 127.9 60 90.0
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 4.9e-28 127.9 60 91.7
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 6.4e-28 127.5 60 90.0
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 6.4e-28 127.5 60 88.3
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 8.4e-28 127.1 60 90.0
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 8.4e-28 127.1 60 90.0
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 1.1e-27 126.7 59 91.5
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 1.1e-27 126.7 59 91.5
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 1.1e-27 126.7 102 61.8
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 1.4e-27 126.3 73 76.7
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.4e-27 126.3 68 85.3
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 1.4e-27 126.3 61 86.9
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 1.9e-27 125.9 60 88.3
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 2.4e-27 125.6 61 86.9
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 2.4e-27 125.6 60 88.3
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 3.2e-27 125.2 59 88.1
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 3.2e-27 125.2 60 88.3
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 3.2e-27 125.2 60 88.3
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 3.2e-27 125.2 61 85.2
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 4.2e-27 124.8 62 83.9
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 4.2e-27 124.8 60 88.3
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 4.2e-27 124.8 60 86.7
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 5.5e-27 124.4 66 81.8
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 5.5e-27 124.4 60 86.7
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 5.5e-27 124.4 64 81.2
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 5.5e-27 124.4 60 86.7
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 5.5e-27 124.4 60 88.3
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 9.3e-27 123.6 61 83.6
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 9.3e-27 123.6 61 86.9
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 1.2e-26 123.2 69 76.8
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 2.1e-26 122.5 61 86.9
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 2.7e-26 122.1 60 86.7
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 2.7e-26 122.1 60 86.7
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 2.7e-26 122.1 60 88.3
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 2.7e-26 122.1 60 86.7
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 2.7e-26 122.1 60 85.0
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 3.5e-26 121.7 60 83.3
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 3.5e-26 121.7 60 88.3
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 3.5e-26 121.7 60 86.7
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 3.5e-26 121.7 61 83.6
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 3.5e-26 121.7 60 85.0
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 4.6e-26 121.3 60 85.0
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.6e-26 121.3 60 85.0
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.6e-26 121.3 60 85.0
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 4.6e-26 121.3 63 81.0
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 4.6e-26 121.3 60 86.7
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 6.0e-26 120.9 60 86.7
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 6.0e-26 120.9 60 85.0
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 6.0e-26 120.9 60 85.0
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 7.9e-26 120.6 60 85.0
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 7.9e-26 120.6 60 85.0
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 7.9e-26 120.6 60 83.3
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 1.0e-25 120.2 59 84.7
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.3e-25 119.8 61 82.0
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 2.3e-25 119.0 60 85.0
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 2.3e-25 119.0 66 75.8
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 3.0e-25 118.6 61 83.6
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 3.0e-25 118.6 60 81.7
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 3.0e-25 118.6 63 77.8
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 3.9e-25 118.2 60 80.0
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.9e-25 118.2 61 80.3
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 3.9e-25 118.2 62 80.6
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 3.9e-25 118.2 60 83.3
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 3.9e-25 118.2 69 71.0
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 3.9e-25 118.2 60 80.0
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 3.9e-25 118.2 60 80.0
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 3.9e-25 118.2 60 78.3
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 5.1e-25 117.9 63 81.0
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 6.7e-25 117.5 60 81.7
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 8.7e-25 117.1 60 81.7
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 8.7e-25 117.1 62 80.6
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 8.7e-25 117.1 62 80.6
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.1e-24 116.7 60 80.0
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 1.5e-24 116.3 62 80.6
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.5e-24 116.3 60 81.7
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.5e-24 116.3 60 81.7
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 1.5e-24 116.3 60 78.3
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 1.9e-24 115.9 59 84.7
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 1.9e-24 115.9 61 77.0
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.9e-24 115.9 73 69.9
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 3.3e-24 115.2 61 82.0
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 3.3e-24 115.2 61 82.0
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.3e-24 114.8 65 73.8
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 5.6e-24 114.4 66 75.8
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 7.4e-24 114.0 62 80.6
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 7.4e-24 114.0 60 80.0
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 9.6e-24 113.6 101 53.5
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 9.6e-24 113.6 60 78.3
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 1.6e-23 112.8 60 75.0
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.6e-23 112.8 62 75.8
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 1.6e-23 112.8 60 76.7
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 1.6e-23 112.8 60 76.7
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 2.8e-23 112.1 66 71.2
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 2.8e-23 112.1 61 75.4
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 3.7e-23 111.7 60 76.7
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 4.8e-23 111.3 60 75.0
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 4.8e-23 111.3 67 70.1
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 6.2e-23 110.9 61 73.8
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 6.2e-23 110.9 61 77.0
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 8.2e-23 110.5 65 73.8
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 1.1e-22 110.2 69 65.2
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 1.4e-22 109.8 60 75.0
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 1.8e-22 109.4 59 74.6
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 1.8e-22 109.4 60 71.7
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 1.8e-22 109.4 61 73.8
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 2.4e-22 109.0 60 75.0
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 2.4e-22 109.0 60 73.3
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 4.0e-22 108.2 56 78.6
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 4.0e-22 108.2 57 75.4
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 5.3e-22 107.8 60 73.3
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 6.9e-22 107.5 65 72.3
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 9.0e-22 107.1 61 70.5
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 1.5e-21 106.3 61 68.9
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 7.6e-21 104.0 60 71.7
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 7.6e-21 104.0 60 71.7
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.7e-20 102.8 77 58.4
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 4.9e-20 101.3 63 66.7
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 4.9e-20 101.3 59 67.8
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 8.4e-20 100.5 101 49.5
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.1e-19 100.1 52 76.9
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 1.4e-19 99.8 64 65.6
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 3.2e-19 98.6 58 67.2
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 4.2e-19 98.2 89 53.9
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 4.2e-19 98.2 58 69.0
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 7.1e-19 97.4 56 73.2
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 7.1e-19 97.4 56 73.2
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 2.7e-18 95.5 108 50.9
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 1.3e-17 93.2 58 67.2
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 3.0e-17 92.0 101 47.5
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 1.5e-16 89.7 58 63.8
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 4.3e-16 88.2 59 59.3
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 5.7e-16 87.8 43 90.7
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 5.7e-16 87.8 43 90.7
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 7.4e-16 87.4 65 60.0
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 9.7e-16 87.0 65 58.5
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 9.7e-16 87.0 65 58.5
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 2.0e-13 79.3 59 55.9
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 2.6e-13 79.0 35 91.4
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.3e-12 76.6 42 78.6
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 5.0e-12 74.7 32 90.6
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 5.0e-12 74.7 32 90.6
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 1.4e-11 73.2 38 71.1
Cfa005572 Carpinus fangiana HOM05D003896 ORTHO05D004517 9.4e-11 70.5 37 83.8
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 9.4e-11 70.5 38 78.9
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 1.8e-09 66.2 60 53.3
Zm00001eb243140 Zea mays HOM05D003896 ORTHO05D004517 3.3e-08 62.0 60 50.0
arahy.Tifrunner.gnm1.ann1.13ME4F Arachis hypogaea HOM05D000724 ORTHO05D015426 3.7e-07 58.5 48 56.2
Os02g0541700 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 8.2e-07 57.4 60 48.3
C02p49050 Brassica napus HOM05D003896 ORTHO05D004517 6.9e-06 54.3 27 88.9


User provided reference genes

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