Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p10720 Brassica napus HOM05D003290 ORTHO05D003866 5.3e-84 314.3 159 100.0
BraA06t24252Z Brassica rapa HOM05D003290 ORTHO05D003866 3.1e-76 288.5 147 98.6
BolC5t30005H Brassica oleracea HOM05D003290 ORTHO05D003866 6.5e-74 280.8 147 96.6
C05p12620 Brassica napus HOM05D003290 ORTHO05D003866 1.9e-73 279.3 147 95.9
BcaC05g25383 Brassica carinata HOM05D003290 ORTHO05D003866 5.5e-73 277.7 147 95.2
Thhalv10006906m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 3.8e-66 255.0 147 89.1
AL1G26630 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 6.1e-64 247.7 147 85.7
AT1G14660 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 8.8e-63 243.8 147 84.4
CARHR015160 Cardamine hirsuta HOM05D003290 ORTHO05D003866 3.4e-62 241.9 147 84.4
Carub.0001s1442 Capsella rubella HOM05D003290 ORTHO05D003866 5.7e-62 241.1 147 83.7
BcaB02g06535 Brassica carinata HOM05D003290 ORTHO05D003866 3.6e-56 221.9 144 79.9
BcaC05g25381 Brassica carinata HOM05D003290 ORTHO05D003866 3.6e-56 221.9 144 79.9
Sp1g13030 Schrenkiella parvula HOM05D003290 ORTHO05D003866 4.4e-54 214.9 147 76.2
Carub.0005s0099 Capsella rubella HOM05D003290 ORTHO05D003866 1.4e-52 209.9 147 72.8
BcaC04g21541 Brassica carinata HOM05D003290 ORTHO05D003866 1.8e-52 209.5 147 72.8
THA.LOC104805106 Tarenaya hassleriana HOM05D003290 ORTHO05D003866 1.8e-52 209.5 152 75.0
C09p30540 Brassica napus HOM05D003290 ORTHO05D003866 2.4e-52 209.1 147 72.8
A09p23700 Brassica napus HOM05D003290 ORTHO05D003866 7.0e-52 207.6 147 72.8
BolC9t55917H Brassica oleracea HOM05D003290 ORTHO05D003866 7.0e-52 207.6 147 72.8
BraA09t37969Z Brassica rapa HOM05D003290 ORTHO05D003866 7.0e-52 207.6 147 72.8
BcaB07g30722 Brassica carinata HOM05D003290 ORTHO05D003866 1.2e-51 206.8 147 71.4
Thhalv10003547m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 1.3e-50 203.4 147 71.4
Sp2g13410 Schrenkiella parvula HOM05D003290 ORTHO05D003866 1.3e-50 203.4 147 70.7
Aa31LG2G7940 Aethionema arabicum HOM05D003290 ORTHO05D003866 5.0e-50 201.4 144 70.8
AT2G01980 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 1.1e-49 200.3 149 72.5
AL5G11170 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 2.1e-48 196.1 148 71.6
Sp1g13020 Schrenkiella parvula HOM05D003290 ORTHO05D003866 1.8e-47 193.0 122 82.8
Thecc.02G301400 Theobroma cacao HOM05D003290 ORTHO05D003866 4.0e-47 191.8 130 73.8
TWI74G0523 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 4.0e-47 191.8 149 62.4
Ciclev10018329m.g Citrus clementina HOM05D003290 ORTHO05D003866 6.8e-47 191.0 139 69.1
PGR142G0945 Punica granatum HOM05D003290 ORTHO05D003866 1.2e-46 190.3 147 63.9
COL.COLO4_27555 Corchorus olitorius HOM05D003290 ORTHO05D003866 2.0e-46 189.5 137 68.6
Ah.03g147350 Amaranthus hybridus HOM05D003290 ORTHO05D003866 4.4e-46 188.3 122 76.2
arahy.Tifrunner.gnm1.ann1.4ZG746 Arachis hypogaea HOM05D003290 ORTHO05D003866 5.8e-46 188.0 123 74.0
Psat7g085560 Pisum sativum HOM05D003290 ORTHO05D003866 5.8e-46 188.0 144 65.3
AUR62017800 Chenopodium quinoa HOM05D003290 ORTHO05D003866 7.5e-46 187.6 136 69.9
AUR62003491 Chenopodium quinoa HOM05D003290 ORTHO05D003866 1.3e-45 186.8 136 69.9
CsaV3_5G017250 Cucumis sativus L. HOM05D003290 ORTHO05D003866 1.3e-45 186.8 124 74.2
TWI56G1413 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 1.3e-45 186.8 149 61.1
Cfa015081 Carpinus fangiana HOM05D003290 ORTHO05D003866 1.7e-45 186.4 147 64.6
Atru.chr11.983 Acer truncatum HOM05D003290 ORTHO05D003866 2.2e-45 186.0 141 67.4
CANSAT78G1043 Cannabis sativa HOM05D003290 ORTHO05D003866 2.2e-45 186.0 145 67.6
CiPaw.05G160000 Carya illinoinensis HOM05D003290 ORTHO05D003866 2.2e-45 186.0 151 64.2
MELO3C005228.2 Cucumis melo HOM05D003290 ORTHO05D003866 2.2e-45 186.0 123 74.0
Dinv02702 Davidia involucrata HOM05D003290 ORTHO05D003866 3.7e-45 185.3 145 65.5
Sed0007344 Sechium edule HOM05D003290 ORTHO05D003866 3.7e-45 185.3 124 73.4
TPR.G11847 Trifolium pratense HOM05D003290 ORTHO05D003866 3.7e-45 185.3 122 71.3
Gohir.A03G113800 Gossypium hirsutum HOM05D003290 ORTHO05D003866 4.9e-45 184.9 130 70.8
Rhsim09G0082800 Rhododendron simsii HOM05D003290 ORTHO05D003866 4.9e-45 184.9 124 72.6
Lalb_Chr13g0293001 Lupinus albus HOM05D003290 ORTHO05D003866 6.4e-45 184.5 134 65.7
RcHm_v2.0_Chr4g0445491 Rosa chinensis HOM05D003290 ORTHO05D003866 6.4e-45 184.5 147 61.9
HPP92_016411 Vanilla planifolia HOM05D003290 ORTHO05D003866 6.4e-45 184.5 147 62.6
GSVIVG01011573001 Vitis vinifera HOM05D003290 ORTHO05D003866 6.4e-45 184.5 147 63.3
Duzib268G0109 Durio zibethinus HOM05D003290 ORTHO05D003866 8.3e-45 184.1 129 70.5
ECA246G3356 Erigeron canadensis HOM05D003290 ORTHO05D003866 8.3e-45 184.1 122 72.1
Gohir.D02G138100 Gossypium hirsutum HOM05D003290 ORTHO05D003866 8.3e-45 184.1 119 74.8
Gorai.005G154600 Gossypium raimondii HOM05D003290 ORTHO05D003866 8.3e-45 184.1 119 74.8
Prupe.1G339200 Prunus persica HOM05D003290 ORTHO05D003866 1.1e-44 183.7 119 73.9
ClCG01G006860 Citrullus lanatus HOM05D003290 ORTHO05D003866 1.4e-44 183.3 117 76.1
Lsat_1_v5_gn_5_35481 Lactuca sativa HOM05D003290 ORTHO05D003866 1.4e-44 183.3 124 71.0
Os12g0641100 Oryza sativa ssp. japonica HOM05D003290 ORTHO05D003866 1.9e-44 183.0 119 73.9
Sc03g0005950 Simmondsia chinensis HOM05D003290 ORTHO05D003866 1.9e-44 183.0 145 66.9
HanXRQChr15g0469331 Helianthus annuus HOM05D003290 ORTHO05D003866 2.4e-44 182.6 121 74.4
Lj4g0008630 Lotus japonicus HOM05D003290 ORTHO05D003866 2.4e-44 182.6 124 69.4
ECA234G2339 Erigeron canadensis HOM05D003290 ORTHO05D003866 3.2e-44 182.2 136 66.9
Manes.15G139900 Manihot esculenta HOM05D003290 ORTHO05D003866 3.2e-44 182.2 147 65.3
Manes.17G091100 Manihot esculenta HOM05D003290 ORTHO05D003866 3.2e-44 182.2 148 66.2
Nn4g24593 Nelumbo nucifera HOM05D003290 ORTHO05D003866 4.1e-44 181.8 149 64.4
TAR629G1764 Trochodendron aralioides HOM05D003290 ORTHO05D003866 4.1e-44 181.8 149 63.8
VMungo0251G2069 Vigna mungo HOM05D003290 ORTHO05D003866 4.1e-44 181.8 145 64.1
Dinv07020 Davidia involucrata HOM05D003290 ORTHO05D003866 5.4e-44 181.4 127 71.7
Lj4g0019755 Lotus japonicus HOM05D003290 ORTHO05D003866 5.4e-44 181.4 119 70.6
CAN.G282.94 Capsicum annuum HOM05D003290 ORTHO05D003866 9.2e-44 180.6 121 71.1
MSTRG.2101 Avicennia marina HOM05D003290 ORTHO05D003866 1.2e-43 180.3 126 72.2
PGSC0003DMG400022786 Solanum tuberosum HOM05D003290 ORTHO05D003866 1.2e-43 180.3 127 70.9
unitig_27.g25301 Utricularia gibba HOM05D003290 ORTHO05D003866 1.6e-43 179.9 124 69.4
Aa31LG2G2650 Aethionema arabicum HOM05D003290 ORTHO05D003866 2.0e-43 179.5 121 76.9
CDE06G1581 Ceratophyllum demersum HOM05D003290 ORTHO05D003866 2.0e-43 179.5 147 61.9
Ca_18198_v3 Cicer arietinum L. HOM05D003290 ORTHO05D003866 2.0e-43 179.5 122 70.5
FvH4_4g35880 Fragaria vesca HOM05D003290 ORTHO05D003866 2.0e-43 179.5 147 62.6
FAN12G1356 Fragaria x ananassa HOM05D003290 ORTHO05D003866 2.0e-43 179.5 147 62.6
Lsat_1_v5_gn_6_55260 Lactuca sativa HOM05D003290 ORTHO05D003866 2.0e-43 179.5 123 71.5
QL03p039662 Quercus lobata HOM05D003290 ORTHO05D003866 2.0e-43 179.5 122 70.5
Actinidia12429 Actinidia chinensis HOM05D003290 ORTHO05D003866 2.7e-43 179.1 131 68.7
Phvul.002G185150 Phaseolus vulgaris HOM05D003290 ORTHO05D003866 2.7e-43 179.1 124 70.2
CSS0011262 Camellia sinensis var. sinensis HOM05D003290 ORTHO05D003866 3.5e-43 178.7 147 59.9
Migut.E00570 Erythranthe guttata HOM05D003290 ORTHO05D003866 3.5e-43 178.7 128 69.5
MBI13_g17879_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 4.6e-43 178.3 147 61.9
MD16G1011500 Malus domestica HOM05D003290 ORTHO05D003866 6.0e-43 177.9 147 62.6
Solyc01g005020.3 Solanum lycopersicum HOM05D003290 ORTHO05D003866 6.0e-43 177.9 126 70.6
Sopen01g001090 Solanum pennellii HOM05D003290 ORTHO05D003866 6.0e-43 177.9 126 70.6
arahy.Tifrunner.gnm1.ann1.GST19D Arachis hypogaea HOM05D003290 ORTHO05D003866 7.8e-43 177.6 123 72.4
Glyma.08G092000 Glycine max HOM05D003290 ORTHO05D003866 1.3e-42 176.8 117 72.6
arahy.Tifrunner.gnm1.ann1.P8F85A Arachis hypogaea HOM05D003290 ORTHO05D003866 1.7e-42 176.4 135 67.4
Nitab4.5_0001529g0050 Nicotiana tabacum HOM05D003290 ORTHO05D003866 1.7e-42 176.4 134 67.2
Aqoxy3G04046 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 3.0e-42 175.6 146 62.3
Potri.008G140700 Populus trichocarpa HOM05D003290 ORTHO05D003866 5.0e-42 174.9 141 65.2
Potri.010G100900 Populus trichocarpa HOM05D003290 ORTHO05D003866 5.0e-42 174.9 119 72.3
HanXRQChr12g0381631 Helianthus annuus HOM05D003290 ORTHO05D003866 6.6e-42 174.5 118 74.6
FvH4_4g35890 Fragaria vesca HOM05D003290 ORTHO05D003866 2.5e-41 172.6 122 68.0
EL10Ac6g15381 Beta vulgaris HOM05D003290 ORTHO05D003866 1.2e-40 170.2 122 71.3
ATR0598G076 Amborella trichopoda HOM05D003290 ORTHO05D003866 1.6e-40 169.9 147 61.9
PSO017G1263 Papaver somniferum HOM05D003290 ORTHO05D003866 2.1e-40 169.5 122 65.6
PSO729G0139 Papaver somniferum HOM05D003290 ORTHO05D003866 6.2e-40 167.9 117 67.5
unitig_699.g19544 Utricularia gibba HOM05D003290 ORTHO05D003866 6.2e-40 167.9 125 68.8
Peaxi162Scf00349g00111 Petunia axillaris HOM05D003290 ORTHO05D003866 8.1e-40 167.5 127 68.5
Sabra08G0106800 Salix brachista HOM05D003290 ORTHO05D003866 1.1e-39 167.2 145 62.1
Sopen04g009310 Solanum pennellii HOM05D003290 ORTHO05D003866 4.0e-39 165.2 149 55.0
Solyc04g018090.2 Solanum lycopersicum HOM05D003290 ORTHO05D003866 1.5e-38 163.3 149 55.0
PSO339G1388 Papaver somniferum HOM05D003290 ORTHO05D003866 2.0e-38 162.9 124 65.3
AagrBONN_evm.TU.Sc2ySwM_344.5331 Anthoceros agrestis HOM05D003290 ORTHO05D003866 4.4e-38 161.8 121 66.1
PSO170G2638 Papaver somniferum HOM05D003290 ORTHO05D003866 5.8e-38 161.4 122 61.5
Nitab4.5_0007122g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 2.9e-37 159.1 143 60.8
Mapoly0062s0025 Marchantia polymorpha HOM05D003290 ORTHO05D003866 4.9e-37 158.3 128 60.2
Mapoly0206s0002 Marchantia polymorpha HOM05D003290 ORTHO05D003866 6.4e-37 157.9 137 57.7
SMO367G0872 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 1.4e-36 156.8 122 64.8
Aqoxy4G00109 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 1.9e-36 156.4 117 64.1
Nitab4.5_0005031g0060 Nicotiana tabacum HOM05D003290 ORTHO05D003866 7.8e-35 151.0 149 55.0
AagrBONN_evm.TU.Sc2ySwM_368.1085 Anthoceros agrestis HOM05D003290 ORTHO05D003866 1.3e-34 150.2 128 57.8
PSO170G6380 Papaver somniferum HOM05D003290 ORTHO05D003866 3.0e-34 149.1 106 65.1
Oeu005357.1 Olea europaea HOM05D003290 ORTHO05D003866 5.1e-34 148.3 101 71.3
vmacro10755 Vaccinium macrocarpon HOM05D003290 ORTHO05D003866 5.1e-34 148.3 140 57.9
PGR102G1943 Punica granatum HOM05D003290 ORTHO05D003866 6.6e-34 147.9 117 62.4
SGA_v2.0_scaffold348G49593 Striga asiatica HOM05D003290 ORTHO05D003866 6.6e-34 147.9 95 74.7
Pp3c22_9570 Physcomitrium patens HOM05D003290 ORTHO05D003866 5.6e-33 144.8 113 62.8
CAN.G1237.29 Capsicum annuum HOM05D003290 ORTHO05D003866 7.3e-33 144.4 148 52.7
SMO367G0300 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 2.8e-32 142.5 126 57.1
Cc11_g05280 Coffea canephora HOM05D003290 ORTHO05D003866 3.6e-32 142.1 132 63.6
Pp3c16_14280 Physcomitrium patens HOM05D003290 ORTHO05D003866 6.2e-32 141.4 116 61.2
FAN22G1284 Fragaria x ananassa HOM05D003290 ORTHO05D003866 8.1e-32 141.0 147 53.1
FAN07G0883 Fragaria x ananassa HOM05D003290 ORTHO05D003866 4.0e-31 138.7 147 52.4
DCAR_030316 Daucus carota HOM05D003290 ORTHO05D003866 1.2e-30 137.1 106 65.1
MBI13_g26466_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 1.7e-29 133.3 147 53.7
SEGI_29378 Sequoiadendron giganteum HOM05D003290 ORTHO05D003866 7.8e-27 124.4 105 57.1
Lj6C728G5 Lonicera japonica HOM05D003290 ORTHO05D003866 3.9e-26 122.1 76 75.0
Peaxi162Scf00130g01212 Petunia axillaris HOM05D003290 ORTHO05D003866 1.4e-23 113.6 77 68.8
Actinidia37492 Actinidia chinensis HOM05D003290 ORTHO05D003866 6.8e-23 111.3 82 67.1
MCO04G150 Micromonas commoda HOM05D003290 ORTHO05D003866 1.4e-20 103.6 119 45.4
SHI04223 Sapria himalayana HOM05D003290 ORTHO05D003866 1.6e-19 100.1 98 57.1
Nitab4.5_0009873g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 6.0e-19 98.2 149 41.6
Cpa.g.sc2.63 Carica papaya HOM05D003290 ORTHO05D003866 2.5e-17 92.8 55 83.6
BolC3t21144H Brassica oleracea HOM05D003439 ORTHO05D004062 8.1e-16 87.8 84 57.1
MD13G1014200 Malus domestica HOM05D003290 ORTHO05D003866 7.6e-14 81.3 147 39.5
QL03p039637 Quercus lobata HOM05D003290 ORTHO05D003866 1.9e-09 66.6 43 69.8
FAN22G1869 Fragaria x ananassa HOM05D003290 ORTHO05D003866 3.3e-09 65.9 73 46.6
Hma1.2p1_0197F.1_g085160 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 1.6e-08 63.5 56 60.7


User provided reference genes

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