Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p10120 Brassica napus HOM05D001333 ORTHO05D018630 1.8e-56 222.2 106 100.0
C08p50350 Brassica napus HOM05D001333 ORTHO05D018630 6.5e-54 213.8 104 97.1
C02p34780 Brassica napus HOM05D001333 ORTHO05D018630 1.2e-52 209.5 103 96.1
BraA06t24197Z Brassica rapa HOM05D001333 ORTHO05D018630 4.9e-41 171.0 81 100.0
BraA02t08158Z Brassica rapa HOM05D001333 ORTHO05D018630 7.8e-39 163.7 81 96.3
BolC9t58075H Brassica oleracea HOM05D001333 ORTHO05D018630 4.0e-35 151.4 78 89.7
Thhalv10004392m.g Eutrema salsugineum HOM05D001333 ORTHO05D001208 2.8e-20 102.1 65 76.9
Carub.0008s2699 Capsella rubella HOM05D001333 ORTHO05D001208 6.2e-20 100.9 65 75.4
C03p59550 Brassica napus HOM05D001333 ORTHO05D001208 3.1e-19 98.6 65 73.8
BolC3t18218H Brassica oleracea HOM05D001333 ORTHO05D001208 3.1e-19 98.6 65 73.8
CARHR280110 Cardamine hirsuta HOM05D001333 ORTHO05D001208 3.1e-19 98.6 65 72.3
Sp2g29170 Schrenkiella parvula HOM05D001333 ORTHO05D001208 4.0e-19 98.2 65 70.8
AL8G43820 Arabidopsis lyrata HOM05D001333 ORTHO05D001208 5.2e-19 97.8 65 72.3
A06p32920 Brassica napus HOM05D001333 ORTHO05D001208 1.5e-18 96.3 65 72.3
BraA06t26224Z Brassica rapa HOM05D001333 ORTHO05D001208 1.5e-18 96.3 65 72.3
Aa31LG1G16040 Aethionema arabicum HOM05D001333 ORTHO05D001208 2.6e-18 95.5 65 72.3
AT5G67480 Arabidopsis thaliana HOM05D001333 ORTHO05D001208 2.6e-18 95.5 65 70.8
THA.LOC104821223 Tarenaya hassleriana HOM05D001333 ORTHO05D001208 1.3e-14 83.2 67 59.7
Eucgr.H02303 Eucalyptus grandis HOM05D001333 ORTHO05D001208 5.1e-14 81.3 67 59.7
Cpa.g.sc6.28 Carica papaya HOM05D001333 ORTHO05D001208 8.6e-14 80.5 65 56.9
COL.COLO4_11564 Corchorus olitorius HOM05D001333 ORTHO05D001208 1.1e-13 80.1 67 59.7
Prupe.6G222100 Prunus persica HOM05D001333 ORTHO05D001208 1.1e-13 80.1 64 57.8
Dinv26920 Davidia involucrata HOM05D001333 ORTHO05D001208 1.5e-13 79.7 64 56.2
Duzib264G0971 Durio zibethinus HOM05D001333 ORTHO05D001208 1.5e-13 79.7 67 56.7
Migut.H00356 Erythranthe guttata HOM05D001333 ORTHO05D001208 1.9e-13 79.3 65 55.4
Ciclev10027337m.g Citrus clementina HOM05D001333 ORTHO05D001208 3.3e-13 78.6 64 57.8
Gohir.D11G052000 Gossypium hirsutum HOM05D001333 ORTHO05D001208 4.3e-13 78.2 65 56.9
Gorai.007G056400 Gossypium raimondii HOM05D001333 ORTHO05D001208 4.3e-13 78.2 65 56.9
vmacro05401 Vaccinium macrocarpon HOM05D001333 ORTHO05D001208 5.6e-13 77.8 65 56.9
Actinidia36437 Actinidia chinensis HOM05D001333 ORTHO05D001208 7.3e-13 77.4 64 56.2
BcaNung06784 Brassica carinata HOM05D001333 ORTHO05D018630 7.3e-13 77.4 40 85.0
Lj4A162T73 Lonicera japonica HOM05D001333 ORTHO05D001208 7.3e-13 77.4 64 57.8
Thecc.01G071500 Theobroma cacao HOM05D001333 ORTHO05D001208 7.3e-13 77.4 67 58.2
Gohir.A11G048400 Gossypium hirsutum HOM05D001333 ORTHO05D001208 1.6e-12 76.3 65 55.4
MD02G1184400 Malus domestica HOM05D001333 ORTHO05D001208 1.6e-12 76.3 64 56.2
FAN23G1605 Fragaria x ananassa HOM05D001333 ORTHO05D001208 2.8e-12 75.5 64 56.2
FAN26G3371 Fragaria x ananassa HOM05D001333 ORTHO05D001208 2.8e-12 75.5 64 56.2
Rhsim10G0101000 Rhododendron simsii HOM05D001333 ORTHO05D001208 2.8e-12 75.5 65 53.8
DCAR_010827 Daucus carota HOM05D001333 ORTHO05D001208 3.6e-12 75.1 67 53.7
FvH4_1g17510 Fragaria vesca HOM05D001333 ORTHO05D001208 3.6e-12 75.1 63 57.1
FAN19G3211 Fragaria x ananassa HOM05D001333 ORTHO05D001208 3.6e-12 75.1 63 57.1
Potri.007G055100 Populus trichocarpa HOM05D001333 ORTHO05D001208 3.6e-12 75.1 67 50.7
Ah.03g140440 Amaranthus hybridus HOM05D001333 ORTHO05D001208 4.7e-12 74.7 64 54.7
CANSAT01G1156 Cannabis sativa HOM05D001333 ORTHO05D001208 4.7e-12 74.7 65 58.5
Ca_24702_v3 Cicer arietinum L. HOM05D001333 ORTHO05D001208 6.2e-12 74.3 65 56.9
TAR628G0985 Trochodendron aralioides HOM05D001333 ORTHO05D001208 6.2e-12 74.3 64 56.2
EL10Ac6g15631 Beta vulgaris HOM05D001333 ORTHO05D001208 8.1e-12 73.9 63 55.6
CSS0028559 Camellia sinensis var. sinensis HOM05D001333 ORTHO05D001208 8.1e-12 73.9 65 53.8
CSS0040162 Camellia sinensis var. sinensis HOM05D001333 ORTHO05D001208 8.1e-12 73.9 65 53.8
PGR004G1531 Punica granatum HOM05D001333 ORTHO05D001208 8.1e-12 73.9 64 56.2
RcHm_v2.0_Chr2g0107741 Rosa chinensis HOM05D001333 ORTHO05D001208 8.1e-12 73.9 64 56.2
CiPaw.02G003100 Carya illinoinensis HOM05D001333 ORTHO05D001208 1.1e-11 73.6 64 57.8
Oeu014240.1 Olea europaea HOM05D001333 ORTHO05D001208 1.4e-11 73.2 65 53.8
GSVIVG01000126001 Vitis vinifera HOM05D001333 ORTHO05D001208 1.4e-11 73.2 65 53.8
MELO3C007627.2 Cucumis melo HOM05D001333 ORTHO05D001208 1.8e-11 72.8 64 57.8
CsaV3_6G044040 Cucumis sativus L. HOM05D001333 ORTHO05D001208 1.8e-11 72.8 64 57.8
Atru.chr3.150 Acer truncatum HOM05D001333 ORTHO05D001208 2.3e-11 72.4 64 53.1
Atru.chr3.179 Acer truncatum HOM05D001333 ORTHO05D001208 2.3e-11 72.4 64 53.1
FAN28G1688 Fragaria x ananassa HOM05D001333 ORTHO05D001208 2.3e-11 72.4 64 54.7
Sabra07G0047500 Salix brachista HOM05D001333 ORTHO05D001208 2.3e-11 72.4 66 51.5
SGA_v2.0_scaffold72G24080 Striga asiatica HOM05D001333 ORTHO05D001208 2.3e-11 72.4 65 50.8
Cfa004121 Carpinus fangiana HOM05D001333 ORTHO05D001208 3.1e-11 72.0 64 56.2
ClCG01G017500 Citrullus lanatus HOM05D001333 ORTHO05D001208 4.0e-11 71.6 64 56.2
Manes.13G112500 Manihot esculenta HOM05D001333 ORTHO05D001208 4.0e-11 71.6 65 53.8
TWI09G1316 Tripterygium wilfordii HOM05D001333 ORTHO05D001208 4.0e-11 71.6 67 52.2
Cc07_g07000 Coffea canephora HOM05D001333 ORTHO05D001208 5.2e-11 71.2 67 47.8
Duzib187G1778 Durio zibethinus HOM05D001333 ORTHO05D001208 5.2e-11 71.2 65 53.8
AUR62003996 Chenopodium quinoa HOM05D001333 ORTHO05D001208 6.8e-11 70.9 64 53.1
Nitab4.5_0000284g0090 Nicotiana tabacum HOM05D001333 ORTHO05D001208 6.8e-11 70.9 61 52.5
SalBow3G0836 Salvia bowleyana HOM05D001333 ORTHO05D001208 6.8e-11 70.9 65 50.8
SalBow3G2502 Salvia bowleyana HOM05D001333 ORTHO05D001208 6.8e-11 70.9 65 50.8
Hund16393 Selenicereus undatus HOM05D001333 ORTHO05D001208 6.8e-11 70.9 63 52.4
CiPaw.01G005600 Carya illinoinensis HOM05D001333 ORTHO05D001208 8.9e-11 70.5 64 56.2
AUR62040250 Chenopodium quinoa HOM05D001333 ORTHO05D001208 8.9e-11 70.5 64 51.6
Peaxi162Scf00449g00215 Petunia axillaris HOM05D001333 ORTHO05D001208 8.9e-11 70.5 64 51.6
Sed0001752 Sechium edule HOM05D001333 ORTHO05D001208 8.9e-11 70.5 64 57.8
Sc03g0002330 Simmondsia chinensis HOM05D001333 ORTHO05D001208 8.9e-11 70.5 64 51.6
TPR.G34861 Trifolium pratense HOM05D001333 ORTHO05D001208 8.9e-11 70.5 64 56.2
TAR381G1065 Trochodendron aralioides HOM05D001333 ORTHO05D001208 8.9e-11 70.5 65 49.2
PSO675G3628 Papaver somniferum HOM05D001333 ORTHO05D001208 1.2e-10 70.1 64 50.0
PGR102G0216 Punica granatum HOM05D001333 ORTHO05D001208 1.2e-10 70.1 64 56.2
Haze_15293 Corylus avellana HOM05D001333 ORTHO05D001208 2.0e-10 69.3 66 54.5
Hma1.2p1_0730F.1_g209775 Hydrangea macrophylla HOM05D001333 ORTHO05D001208 2.0e-10 69.3 65 49.2
PSO541G2809 Papaver somniferum HOM05D001333 ORTHO05D001208 2.0e-10 69.3 64 50.0
C01p01550 Brassica napus HOM05D001333 ORTHO05D001208 2.6e-10 68.9 65 49.2
CAN.G1075.27 Capsicum annuum HOM05D001333 ORTHO05D001208 2.6e-10 68.9 54 59.3
Aqoxy6G02658 Aquilegia oxysepala HOM05D001333 ORTHO05D001208 3.4e-10 68.6 64 48.4
BolC7t46663H Brassica oleracea HOM05D001333 ORTHO05D001208 3.4e-10 68.6 65 47.7
Gohir.A02G152200 Gossypium hirsutum HOM05D001333 ORTHO05D001208 3.4e-10 68.6 65 50.8
Gohir.D03G028000 Gossypium hirsutum HOM05D001333 ORTHO05D001208 3.4e-10 68.6 65 50.8
Gorai.003G029700 Gossypium raimondii HOM05D001333 ORTHO05D001208 3.4e-10 68.6 65 50.8
Nitab4.5_0000036g0030 Nicotiana tabacum HOM05D001333 ORTHO05D001208 3.4e-10 68.6 61 50.8
Peaxi162Scf00364g00015 Petunia axillaris HOM05D001333 ORTHO05D001208 3.4e-10 68.6 53 60.4
Psat2g170960 Pisum sativum HOM05D001333 ORTHO05D001208 3.4e-10 68.6 64 54.7
BcaNung02065 Brassica carinata HOM05D001333 ORTHO05D001208 4.4e-10 68.2 65 47.7
Lj2g0017522 Lotus japonicus HOM05D001333 ORTHO05D001208 5.8e-10 67.8 64 53.1
PGSC0003DMG400021422 Solanum tuberosum HOM05D001333 ORTHO05D001208 5.8e-10 67.8 53 60.4
MSTRG.2821 Avicennia marina HOM05D001333 ORTHO05D001208 7.6e-10 67.4 67 46.3
BolC1t00150H Brassica oleracea HOM05D001333 ORTHO05D001208 7.6e-10 67.4 65 49.2
Thhalv10025450m.g Eutrema salsugineum HOM05D001333 ORTHO05D001208 7.6e-10 67.4 64 50.0
Sp7g35270 Schrenkiella parvula HOM05D001333 ORTHO05D001208 7.6e-10 67.4 65 47.7
AL7G13150 Arabidopsis lyrata HOM05D001333 ORTHO05D001208 1.3e-09 66.6 65 47.7
BcaNung02933 Brassica carinata HOM05D001333 ORTHO05D001208 1.3e-09 66.6 65 47.7
C07p62490 Brassica napus HOM05D001333 ORTHO05D001208 1.3e-09 66.6 65 47.7
HanXRQChr12g0373151 Helianthus annuus HOM05D001333 ORTHO05D001208 1.3e-09 66.6 64 48.4
Lsat_1_v5_gn_4_160860 Lactuca sativa HOM05D001333 ORTHO05D001208 1.3e-09 66.6 64 50.0
Lalb_Chr09g0323561 Lupinus albus HOM05D001333 ORTHO05D001208 1.3e-09 66.6 64 53.1
A01p01370 Brassica napus HOM05D001333 ORTHO05D001208 1.7e-09 66.2 65 47.7
A03p65350 Brassica napus HOM05D001333 ORTHO05D001208 1.7e-09 66.2 65 47.7
BraA03t15589Z Brassica rapa HOM05D001333 ORTHO05D001208 1.7e-09 66.2 65 47.7
CARHR246000 Cardamine hirsuta HOM05D001333 ORTHO05D001208 2.2e-09 65.9 65 47.7
Medtr5g015680 Medicago truncatula HOM05D001333 ORTHO05D001208 2.2e-09 65.9 64 51.6
Nitab4.5_0006842g0010 Nicotiana tabacum HOM05D001333 ORTHO05D001208 2.2e-09 65.9 63 55.6
Solyc02g092460.3 Solanum lycopersicum HOM05D001333 ORTHO05D001208 2.2e-09 65.9 53 58.5
Sopen02g037020 Solanum pennellii HOM05D001333 ORTHO05D001208 2.2e-09 65.9 53 58.5
AT4G37610 Arabidopsis thaliana HOM05D001333 ORTHO05D001208 2.9e-09 65.5 65 46.2
Carub.0007s0265 Capsella rubella HOM05D001333 ORTHO05D001208 2.9e-09 65.5 65 44.6
VMungo1215G2622 Vigna mungo HOM05D001333 ORTHO05D001208 2.9e-09 65.5 64 51.6
Lsat_1_v5_gn_2_83221 Lactuca sativa HOM05D001333 ORTHO05D001208 3.8e-09 65.1 64 46.9
Aa31LG6G14510 Aethionema arabicum HOM05D001333 ORTHO05D001208 4.9e-09 64.7 67 43.3
ECA232G2000 Erigeron canadensis HOM05D001333 ORTHO05D001208 4.9e-09 64.7 64 46.9
Glyma.01G193300 Glycine max HOM05D001333 ORTHO05D001208 4.9e-09 64.7 64 51.6
Lalb_Chr16g0378821 Lupinus albus HOM05D001333 ORTHO05D001208 8.4e-09 63.9 63 50.8
Nitab4.5_0000651g0200 Nicotiana tabacum HOM05D001333 ORTHO05D001208 8.4e-09 63.9 63 54.0
DCAR_025794 Daucus carota HOM05D001333 ORTHO05D001208 1.1e-08 63.5 65 44.6
Gohir.D11G207600 Gossypium hirsutum HOM05D001333 ORTHO05D001208 1.4e-08 63.2 65 49.2
arahy.Tifrunner.gnm1.ann1.B6M0S6 Arachis hypogaea HOM05D001333 ORTHO05D001208 1.9e-08 62.8 64 46.9
arahy.Tifrunner.gnm1.ann1.JA05KE Arachis hypogaea HOM05D001333 ORTHO05D001208 2.4e-08 62.4 64 46.9
unitig_21.g20474 Utricularia gibba HOM05D001333 ORTHO05D001208 2.4e-08 62.4 53 54.7
ATR0208G018 Amborella trichopoda HOM05D001333 ORTHO05D001208 3.2e-08 62.0 60 46.7
Gohir.A11G215650 Gossypium hirsutum HOM05D001333 ORTHO05D001208 3.2e-08 62.0 64 50.0
Gorai.007G222700 Gossypium raimondii HOM05D001333 ORTHO05D001208 3.2e-08 62.0 64 50.0
HPP92_006070 Vanilla planifolia HOM05D001333 ORTHO05D001208 4.1e-08 61.6 64 48.4
HPP92_006074 Vanilla planifolia HOM05D001333 ORTHO05D001208 4.1e-08 61.6 64 48.4
Phvul.002G011700 Phaseolus vulgaris HOM05D001333 ORTHO05D001208 5.4e-08 61.2 64 48.4
Duzib268G1441 Durio zibethinus HOM05D001333 ORTHO05D001208 7.1e-08 60.8 64 45.3
THA.LOC104807628 Tarenaya hassleriana HOM05D001333 ORTHO05D001208 7.1e-08 60.8 65 44.6
BraA01t00133Z Brassica rapa HOM05D001333 ORTHO05D001208 9.2e-08 60.5 70 44.3
AUR62002432 Chenopodium quinoa HOM05D001333 ORTHO05D001208 1.2e-07 60.1 65 43.1
ECA238G0403 Erigeron canadensis HOM05D001333 ORTHO05D001208 1.2e-07 60.1 64 46.9
Thecc.04G160300 Theobroma cacao HOM05D001333 ORTHO05D001208 1.2e-07 60.1 65 44.6
MD15G1146800 Malus domestica HOM05D001333 ORTHO05D001208 2.1e-07 59.3 65 44.6
SEGI_28496 Sequoiadendron giganteum HOM05D001333 ORTHO05D001208 2.1e-07 59.3 67 40.3
Aqoxy6G02661 Aquilegia oxysepala HOM05D001333 ORTHO05D001208 2.7e-07 58.9 64 43.8
MSTRG.24560 Avicennia marina HOM05D001333 ORTHO05D001208 4.6e-07 58.2 64 42.2
CSS0016113 Camellia sinensis var. sinensis HOM05D002568 ORTHO05D002814 4.6e-07 58.2 65 43.1
CSS0048773 Camellia sinensis var. sinensis HOM05D001333 ORTHO05D001208 4.6e-07 58.2 65 43.1
Lj6A270T15 Lonicera japonica HOM05D001333 ORTHO05D001208 6.0e-07 57.8 65 43.1
PSO675G1355 Papaver somniferum HOM05D001333 ORTHO05D001208 7.8e-07 57.4 57 45.6
Prupe.7G267800 Prunus persica HOM05D001333 ORTHO05D001208 7.8e-07 57.4 65 44.6
QL10p058711 Quercus lobata HOM05D001333 ORTHO05D001208 7.8e-07 57.4 65 43.1
QL10p059101 Quercus lobata HOM05D001333 ORTHO05D001208 7.8e-07 57.4 65 43.1
AUR62023756 Chenopodium quinoa HOM05D001333 ORTHO05D001208 1.0e-06 57.0 65 40.0
RcHm_v2.0_Chr2g0084941 Rosa chinensis HOM05D001333 ORTHO05D001208 1.0e-06 57.0 65 44.6
Hund13946 Selenicereus undatus HOM05D001333 ORTHO05D018630 1.0e-06 57.0 53 50.9
Dinv33227 Davidia involucrata HOM05D001333 ORTHO05D001208 1.3e-06 56.6 65 43.1
Gohir.A05G328100 Gossypium hirsutum HOM05D001333 ORTHO05D001208 1.3e-06 56.6 65 43.1
MBI07_g39639_MAGBIO Magnolia biondii HOM05D001333 ORTHO05D001208 1.3e-06 56.6 65 41.5
Aa31LG1G18970 Aethionema arabicum HOM05D001333 ORTHO05D001208 1.7e-06 56.2 65 44.6
Migut.N03051 Erythranthe guttata HOM05D001333 ORTHO05D001208 1.7e-06 56.2 65 44.6
FAN23G1775 Fragaria x ananassa HOM05D001333 ORTHO05D001208 1.7e-06 56.2 65 46.2
Cc03_g15070 Coffea canephora HOM05D001333 ORTHO05D001208 2.3e-06 55.8 65 44.6
Nitab4.5_0000013g0250 Nicotiana tabacum HOM05D001333 ORTHO05D001208 2.3e-06 55.8 65 41.5
Nitab4.5_0001621g0030 Nicotiana tabacum HOM05D001333 ORTHO05D001208 3.0e-06 55.5 65 41.5
TWI38G1815 Tripterygium wilfordii HOM05D001333 ORTHO05D001208 3.0e-06 55.5 64 43.8
CANSAT56G1870 Cannabis sativa HOM05D001333 ORTHO05D001208 3.9e-06 55.1 65 41.5
Ciclev10020409m.g Citrus clementina HOM05D001333 ORTHO05D001208 3.9e-06 55.1 65 43.1
Gohir.D05G328100 Gossypium hirsutum HOM05D001333 ORTHO05D001208 3.9e-06 55.1 65 41.5
Gorai.009G352000 Gossypium raimondii HOM05D001333 ORTHO05D001208 3.9e-06 55.1 65 41.5
Rhsim02G0086300 Rhododendron simsii HOM05D001333 ORTHO05D001208 3.9e-06 55.1 65 41.5
Rhsim02G0087000 Rhododendron simsii HOM05D001333 ORTHO05D001208 3.9e-06 55.1 65 41.5
EL10Ac3g06125 Beta vulgaris HOM05D001333 ORTHO05D001208 5.1e-06 54.7 65 41.5
FvH4_1g00430 Fragaria vesca HOM05D001333 ORTHO05D001208 5.1e-06 54.7 65 44.6
FAN26G3259 Fragaria x ananassa HOM05D001333 ORTHO05D001208 5.1e-06 54.7 65 44.6
TAR362G0202 Trochodendron aralioides HOM05D001333 ORTHO05D001208 5.1e-06 54.7 65 41.5
Duzib151G0765 Durio zibethinus HOM05D001333 ORTHO05D001208 6.6e-06 54.3 65 41.5
Lalb_Chr16g0389231 Lupinus albus HOM05D001333 ORTHO05D001208 6.6e-06 54.3 64 40.6
Os01g0893400 Oryza sativa ssp. japonica HOM05D001333 ORTHO05D001208 6.6e-06 54.3 65 41.5
Sabra01G0117600 Salix brachista HOM05D001333 ORTHO05D001208 6.6e-06 54.3 65 38.5
MD02G1003500 Malus domestica HOM05D001333 ORTHO05D001208 8.6e-06 53.9 65 41.5
PGR042G3665 Punica granatum HOM05D001333 ORTHO05D001208 8.6e-06 53.9 65 41.5
SGA_v2.0_scaffold25G11007 Striga asiatica HOM05D002514 ORTHO05D002761 8.6e-06 53.9 65 40.0


User provided reference genes

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