Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p09990 Brassica napus HOM05D006796 ORTHO05D008615 8.7e-152 540.4 304 100.0
BraA06t24185Z Brassica rapa HOM05D006796 ORTHO05D008615 1.6e-129 466.5 307 90.9
BolC5t29921H Brassica oleracea HOM05D006796 ORTHO05D008615 1.3e-110 403.7 313 80.5
BcaC05g25295 Brassica carinata HOM05D006796 ORTHO05D008615 6.3e-102 374.8 313 70.3
C05p11750 Brassica napus HOM05D006796 ORTHO05D008615 9.5e-98 360.9 307 69.1
AT1G13990 Arabidopsis thaliana HOM05D006796 ORTHO05D008615 1.4e-96 357.1 317 71.9
AL1G25830 Arabidopsis lyrata HOM05D006796 ORTHO05D008615 4.4e-95 352.1 317 71.0
Aa31LG1G1040 Aethionema arabicum HOM05D006796 ORTHO05D008615 1.4e-93 347.1 323 65.6
CARHR014360 Cardamine hirsuta HOM05D006796 ORTHO05D008615 7.8e-92 341.3 318 65.4
Thhalv10008453m.g Eutrema salsugineum HOM05D006796 ORTHO05D008615 7.8e-92 341.3 315 66.0
Carub.0001s1368 Capsella rubella HOM05D006796 ORTHO05D008615 9.2e-85 317.8 319 67.1
THA.LOC104805179 Tarenaya hassleriana HOM05D006796 ORTHO05D008615 4.3e-74 282.3 307 55.7
Haze_11961 Corylus avellana HOM05D006796 ORTHO05D008615 1.0e-67 261.2 313 52.7
MD16G1067400 Malus domestica HOM05D006796 ORTHO05D008615 1.1e-66 257.7 231 62.8
Manes.05G105900 Manihot esculenta HOM05D006796 ORTHO05D008615 1.1e-66 257.7 324 50.9
QL03p069702 Quercus lobata HOM05D006796 ORTHO05D008615 1.5e-66 257.3 363 49.0
MELO3C002984.2 Cucumis melo HOM05D006796 ORTHO05D008615 4.3e-66 255.8 315 51.4
Ciclev10032381m.g Citrus clementina HOM05D006796 ORTHO05D008615 7.3e-66 255.0 309 53.1
Potri.010G164400 Populus trichocarpa HOM05D006796 ORTHO05D008615 1.6e-65 253.8 324 53.4
Nn4g23271 Nelumbo nucifera HOM05D006796 ORTHO05D008615 3.6e-65 252.7 323 51.7
TWI31G0717 Tripterygium wilfordii HOM05D006796 ORTHO05D008615 4.8e-65 252.3 234 61.1
Atru.chr11.1722 Acer truncatum HOM05D006796 ORTHO05D008615 6.2e-65 251.9 318 50.9
Sabra10G0124800 Salix brachista HOM05D006796 ORTHO05D008615 8.1e-65 251.5 331 53.2
CANSAT64G1871 Cannabis sativa HOM05D006796 ORTHO05D008615 1.1e-64 251.1 321 51.7
Thecc.02G339900 Theobroma cacao HOM05D006796 ORTHO05D008615 1.4e-64 250.8 330 50.0
Prupe.1G279300 Prunus persica HOM05D006796 ORTHO05D008615 1.8e-64 250.4 230 61.3
FAN12G1163 Fragaria x ananassa HOM05D006796 ORTHO05D008615 2.4e-64 250.0 316 54.7
FvH4_4g30770 Fragaria vesca HOM05D006796 ORTHO05D008615 3.1e-64 249.6 316 54.7
arahy.Tifrunner.gnm1.ann1.NP20FV Arachis hypogaea HOM05D006796 ORTHO05D008615 4.0e-64 249.2 330 47.6
arahy.Tifrunner.gnm1.ann1.R8NX8D Arachis hypogaea HOM05D006796 ORTHO05D008615 4.0e-64 249.2 330 47.6
FAN22G2031 Fragaria x ananassa HOM05D006796 ORTHO05D008615 5.3e-64 248.8 316 54.7
Ca_04876_v3 Cicer arietinum L. HOM05D006796 ORTHO05D008615 2.0e-63 246.9 315 48.9
Eucgr.B03198 Eucalyptus grandis HOM05D006796 ORTHO05D008615 3.4e-63 246.1 323 48.3
PGR102G1583 Punica granatum HOM05D006796 ORTHO05D008615 9.9e-63 244.6 326 54.0
RcHm_v2.0_Chr4g0439161 Rosa chinensis HOM05D006796 ORTHO05D008615 9.9e-63 244.6 319 55.5
CSS0026382 Camellia sinensis var. sinensis HOM05D006796 ORTHO05D008615 1.3e-62 244.2 238 58.8
Duzib268G1785 Durio zibethinus HOM05D006796 ORTHO05D008615 1.3e-62 244.2 320 50.3
FAN07G2185 Fragaria x ananassa HOM05D006796 ORTHO05D008615 1.3e-62 244.2 314 50.0
MD13G1068600 Malus domestica HOM05D006796 ORTHO05D008615 1.3e-62 244.2 228 60.1
Cc11_g12630 Coffea canephora HOM05D006796 ORTHO05D008615 1.7e-62 243.8 320 48.8
Lj2g0006920 Lotus japonicus HOM05D006796 ORTHO05D008615 2.2e-62 243.4 314 50.3
TAR371G0712 Trochodendron aralioides HOM05D006796 ORTHO05D008615 4.9e-62 242.3 323 50.8
TAR629G0550 Trochodendron aralioides HOM05D006796 ORTHO05D008615 4.9e-62 242.3 310 46.8
Glyma.01G052700 Glycine max HOM05D006796 ORTHO05D008615 6.4e-62 241.9 312 48.4
Dinv34092 Davidia involucrata HOM05D006796 ORTHO05D008615 1.1e-61 241.1 345 48.7
Cpa.g.sc1.63 Carica papaya HOM05D006796 ORTHO05D008615 1.4e-61 240.7 314 49.0
CsaV3_5G022970 Cucumis sativus L. HOM05D006796 ORTHO05D008615 1.4e-61 240.7 305 49.5
SalBow8G2627 Salvia bowleyana HOM05D006796 ORTHO05D008615 1.9e-61 240.4 230 57.8
CiPaw.07G071700 Carya illinoinensis HOM05D006796 ORTHO05D008615 3.2e-61 239.6 331 48.3
Lalb_Chr10g0098461 Lupinus albus HOM05D006796 ORTHO05D008615 4.2e-61 239.2 236 55.9
Oeu055099.3 Olea europaea HOM05D006796 ORTHO05D008615 4.2e-61 239.2 348 45.1
Nitab4.5_0000391g0260 Nicotiana tabacum HOM05D006796 ORTHO05D008615 5.4e-61 238.8 306 48.0
Psat2g126440 Pisum sativum HOM05D006796 ORTHO05D008615 7.1e-61 238.4 311 47.6
CDE02G1750 Ceratophyllum demersum HOM05D006796 ORTHO05D008615 9.3e-61 238.0 236 54.7
Gohir.D04G191000 Gossypium hirsutum HOM05D006796 ORTHO05D008615 9.3e-61 238.0 322 46.3
Gorai.012G186400 Gossypium raimondii HOM05D006796 ORTHO05D008615 9.3e-61 238.0 322 46.3
VMungo1215G0648 Vigna mungo HOM05D006796 ORTHO05D008615 9.3e-61 238.0 310 47.4
Actinidia19934 Actinidia chinensis HOM05D006796 ORTHO05D008615 1.2e-60 237.7 315 47.6
Glyma.02G111300 Glycine max HOM05D006796 ORTHO05D008615 1.2e-60 237.7 311 47.9
ClCG09G022060 Citrullus lanatus HOM05D006796 ORTHO05D008615 1.6e-60 237.3 310 48.4
GSVIVG01012496001 Vitis vinifera HOM05D006796 ORTHO05D008615 1.6e-60 237.3 315 47.6
Phvul.002G103200 Phaseolus vulgaris HOM05D006796 ORTHO05D008615 2.1e-60 236.9 311 47.3
PSO017G7370 Papaver somniferum HOM05D006796 ORTHO05D008615 2.7e-60 236.5 232 55.6
MSTRG.2332 Avicennia marina HOM05D006796 ORTHO05D008615 4.6e-60 235.7 230 56.5
CAN.G964.30 Capsicum annuum HOM05D006796 ORTHO05D008615 4.6e-60 235.7 228 57.0
MSTRG.13431 Avicennia marina HOM05D006796 ORTHO05D008615 6.0e-60 235.3 230 56.5
Cfa008932 Carpinus fangiana HOM05D006796 ORTHO05D008615 1.0e-59 234.6 408 41.4
Migut.L01249 Erythranthe guttata HOM05D006796 ORTHO05D008615 1.0e-59 234.6 230 57.0
PSO478G1165 Papaver somniferum HOM05D006796 ORTHO05D008615 1.0e-59 234.6 311 50.2
Lj3A1033T56 Lonicera japonica HOM05D006796 ORTHO05D008615 1.7e-59 233.8 318 47.8
PGSC0003DMG400028345 Solanum tuberosum HOM05D006796 ORTHO05D008615 3.0e-59 233.0 314 51.6
TPR.G19931 Trifolium pratense HOM05D006796 ORTHO05D008615 3.9e-59 232.6 313 47.6
Hund25209 Selenicereus undatus HOM05D006796 ORTHO05D008615 5.1e-59 232.3 309 47.6
SGA_v2.0_scaffold63G21639 Striga asiatica HOM05D006796 ORTHO05D008615 5.1e-59 232.3 242 55.4
Sc11g0002140 Simmondsia chinensis HOM05D006796 ORTHO05D008615 6.6e-59 231.9 231 56.3
Hma1.2p1_0354F.1_g133830 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 1.1e-58 231.1 234 56.4
CiPaw.05G129900 Carya illinoinensis HOM05D006796 ORTHO05D008615 1.9e-58 230.3 235 58.3
Lsat_1_v5_gn_4_10660 Lactuca sativa HOM05D006796 ORTHO05D008615 1.9e-58 230.3 324 47.5
EL10Ac6g13260 Beta vulgaris HOM05D006796 ORTHO05D008615 3.3e-58 229.6 307 45.9
Peaxi162Scf00222g00236 Petunia axillaris HOM05D006796 ORTHO05D008615 3.3e-58 229.6 309 46.6
ECA234G4054 Erigeron canadensis HOM05D006796 ORTHO05D008615 4.3e-58 229.2 230 53.5
Sopen05g007830 Solanum pennellii HOM05D006796 ORTHO05D008615 6.2e-57 225.3 312 49.4
Gohir.D04G190901 Gossypium hirsutum HOM05D006796 ORTHO05D008615 1.1e-56 224.6 321 44.5
Zm00001eb402440 Zea mays HOM05D006796 ORTHO05D008615 2.0e-55 220.3 228 53.9
ATR0564G337 Amborella trichopoda HOM05D006796 ORTHO05D008615 1.3e-54 217.6 229 52.8
Aqoxy3G00482 Aquilegia oxysepala HOM05D006796 ORTHO05D008615 1.3e-54 217.6 231 50.2
Os03g0168200 Oryza sativa ssp. japonica HOM05D006796 ORTHO05D008615 6.4e-54 215.3 226 52.7
HPP92_016903 Vanilla planifolia HOM05D006796 ORTHO05D008615 1.1e-53 214.5 231 51.9
AUR62032832 Chenopodium quinoa HOM05D006796 ORTHO05D008615 2.4e-53 213.4 311 45.7
vmacro01347 Vaccinium macrocarpon HOM05D006796 ORTHO05D008615 3.2e-53 213.0 320 44.4
Mapoly0042s0065 Marchantia polymorpha HOM05D006796 ORTHO05D008615 9.6e-50 201.4 241 47.3
AUR62005838 Chenopodium quinoa HOM05D006796 ORTHO05D008615 4.8e-49 199.1 217 53.5
COL.COLO4_27978 Corchorus olitorius HOM05D006796 ORTHO05D008615 7.6e-47 191.8 156 64.7
unitig_8.g3954 Utricularia gibba HOM05D006796 ORTHO05D008615 6.5e-46 188.7 225 49.3
Nitab4.5_0004906g0020 Nicotiana tabacum HOM05D006796 ORTHO05D008615 3.2e-45 186.4 147 65.3
Sed0012383 Sechium edule HOM05D006796 ORTHO05D008615 2.5e-42 176.8 205 50.7
HanXRQChr12g0379181 Helianthus annuus HOM05D006796 ORTHO05D008615 1.6e-41 174.1 283 42.8
SMO271G0176 Selaginella moellendorffii HOM05D006796 ORTHO05D008615 3.1e-40 169.9 226 46.9
Actinidia31964 Actinidia chinensis HOM05D006796 ORTHO05D008615 2.0e-39 167.2 128 70.3
Gohir.1Z049816 Gossypium hirsutum HOM05D006796 ORTHO05D008615 2.0e-39 167.2 118 72.0
arahy.Tifrunner.gnm1.ann1.T4YGUP Arachis hypogaea HOM05D006796 ORTHO05D008615 5.8e-39 165.6 163 57.7
CBR_g41640 Chara braunii HOM05D006796 ORTHO05D008615 1.3e-33 147.9 260 39.6
Rhsim12G0078900 Rhododendron simsii HOM05D006796 ORTHO05D008615 1.4e-32 144.4 309 34.3
Medtr5g042520 Medicago truncatula HOM05D006796 ORTHO05D008615 5.5e-29 132.5 240 45.4
Potri.008G090900 Populus trichocarpa HOM05D006796 ORTHO05D008615 4.6e-28 129.4 226 41.2
CDE09G0941 Ceratophyllum demersum HOM05D006796 ORTHO05D008615 1.7e-22 110.9 77 67.5
Hma1.2p1_0354F.1_g133820 Hydrangea macrophylla HOM05D006796 ORTHO05D008615 3.9e-19 99.8 126 46.8
AagrBONN_evm.TU.Sc2ySwM_344.1473 Anthoceros agrestis HOM05D006796 ORTHO05D008615 5.7e-18 95.9 167 38.3
SEGI_14917 Sequoiadendron giganteum HOM05D006796 ORTHO05D008615 5.7e-18 95.9 73 63.0
Nn2g13928 Nelumbo nucifera HOM05D006796 ORTHO05D008615 5.3e-16 89.4 73 63.0
Solyc05g013060.4 Solanum lycopersicum HOM05D006796 ORTHO05D008615 2.9e-14 83.6 227 36.1
Oeu021077.1 Olea europaea HOM05D006796 ORTHO05D008615 2.3e-11 73.9 226 29.6
Gohir.A12G247950 Gossypium hirsutum HOM05D006796 ORTHO05D008615 3.3e-10 70.1 51 64.7
SalBow1G4829 Salvia bowleyana HOM05D006796 ORTHO05D000018 9.7e-10 68.6 46 67.4
vmacro01341 Vaccinium macrocarpon HOM05D006796 ORTHO05D008615 2.2e-09 67.4 135 38.5
Ca_04476_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 1.7e-06 57.8 35 74.3
Ca_27564_v3 Cicer arietinum L. HOM05D003588 ORTHO05D004252 2.2e-06 57.4 45 62.2
Ca_28040_v3 Cicer arietinum L. HOM05D006796 ORTHO05D008615 3.8e-06 56.6 38 63.2


User provided reference genes

Program Settings