Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p09430 Brassica napus HOM05D007926 ORTHO05D009983 6.5e-60 233.8 113 100.0
BraA06t24128Z Brassica rapa HOM05D007926 ORTHO05D009983 6.5e-60 233.8 113 100.0
BcaC05g25224 Brassica carinata HOM05D007926 ORTHO05D009983 2.1e-58 228.8 113 97.3
C05p11100 Brassica napus HOM05D007926 ORTHO05D009983 2.1e-58 228.8 113 97.3
BolC5t29857H Brassica oleracea HOM05D007926 ORTHO05D009983 2.1e-58 228.8 113 97.3
BcaB02g06430 Brassica carinata HOM05D007926 ORTHO05D009983 1.1e-54 216.5 113 92.9
BcaC07g41751 Brassica carinata HOM05D007926 ORTHO05D009983 8.8e-49 196.8 111 85.6
Sp1g10740 Schrenkiella parvula HOM05D007926 ORTHO05D009983 1.1e-46 189.9 113 82.3
BraA08t35224Z Brassica rapa HOM05D007926 ORTHO05D009983 1.4e-46 189.5 114 83.3
A08p33040 Brassica napus HOM05D007926 ORTHO05D009983 1.2e-45 186.4 114 82.5
BcaB08g37432 Brassica carinata HOM05D007926 ORTHO05D009983 2.0e-45 185.7 111 83.8
BcaC07g41734 Brassica carinata HOM05D007926 ORTHO05D009983 2.0e-45 185.7 111 83.8
BcaC07g41735 Brassica carinata HOM05D007926 ORTHO05D009983 2.0e-45 185.7 111 83.8
C08p47740 Brassica napus HOM05D007926 ORTHO05D009983 7.7e-45 183.7 105 84.8
CARHR012430 Cardamine hirsuta HOM05D007926 ORTHO05D009983 1.0e-44 183.3 113 79.6
BolC8t52311H Brassica oleracea HOM05D007926 ORTHO05D009983 2.9e-44 181.8 105 83.8
AL1G23320 Arabidopsis lyrata HOM05D007926 ORTHO05D009983 7.2e-43 177.2 114 78.1
A09p64120 Brassica napus HOM05D007926 ORTHO05D009983 7.2e-43 177.2 105 82.9
BraA09t41758Z Brassica rapa HOM05D007926 ORTHO05D009983 7.2e-43 177.2 105 82.9
Carub.0001s1175 Capsella rubella HOM05D007926 ORTHO05D009983 3.6e-42 174.9 114 76.3
Thhalv10009916m.g Eutrema salsugineum HOM05D007926 ORTHO05D009983 8.0e-42 173.7 113 76.1
AT1G12064 Arabidopsis thaliana HOM05D007926 ORTHO05D009983 1.7e-36 156.0 113 72.6
Aa31LG1G2660 Aethionema arabicum HOM05D007926 ORTHO05D009983 3.6e-34 148.3 113 68.1
BcaB02g06429 Brassica carinata HOM05D007926 ORTHO05D009983 2.0e-32 142.5 77 89.6
THA.LOC104809471 Tarenaya hassleriana HOM05D007926 ORTHO05D009983 2.3e-25 119.0 70 78.6
TWI63G0020 Tripterygium wilfordii HOM05D007926 ORTHO05D009983 1.3e-20 103.2 81 56.8
Potri.006G009500 Populus trichocarpa HOM05D007926 ORTHO05D009983 6.6e-20 100.9 113 46.0
Sabra06G0007300 Salix brachista HOM05D007926 ORTHO05D009983 1.5e-19 99.8 111 45.9
Ciclev10017269m.g Citrus clementina HOM05D007926 ORTHO05D009983 2.1e-18 95.9 105 44.8
TAR627G0241 Trochodendron aralioides HOM05D007926 ORTHO05D009983 4.7e-18 94.7 110 44.5
Hma1.2p1_0700F.1_g205740 Hydrangea macrophylla HOM05D007926 ORTHO05D009983 8.0e-18 94.0 84 47.6
CiPaw.09G102200 Carya illinoinensis HOM05D007926 ORTHO05D009983 2.3e-17 92.4 100 44.0
FAN21G0219 Fragaria x ananassa HOM05D007926 ORTHO05D009983 2.3e-17 92.4 107 44.9
Atru.chr1.2458 Acer truncatum HOM05D007926 ORTHO05D009983 3.1e-17 92.0 102 42.2
FvH4_3g01020 Fragaria vesca HOM05D007926 ORTHO05D009983 3.1e-17 92.0 107 44.9
Gohir.A10G009400 Gossypium hirsutum HOM05D007926 ORTHO05D009983 4.0e-17 91.7 106 44.3
Lalb_Chr18g0056941 Lupinus albus HOM05D007926 ORTHO05D009983 4.0e-17 91.7 81 51.9
Manes.13G107300 Manihot esculenta HOM05D007926 ORTHO05D009983 4.0e-17 91.7 102 50.0
FAN25G3056 Fragaria x ananassa HOM05D007926 ORTHO05D009983 6.8e-17 90.9 98 45.9
Cfa000107 Carpinus fangiana HOM05D007926 ORTHO05D009983 8.9e-17 90.5 96 46.9
Gorai.011G009900 Gossypium raimondii HOM05D007926 ORTHO05D009983 8.9e-17 90.5 106 45.3
Duzib192G0081 Durio zibethinus HOM05D007926 ORTHO05D009983 3.4e-16 88.6 84 46.4
RhsimUnG0109600 Rhododendron simsii HOM05D007926 ORTHO05D009983 9.8e-16 87.0 111 39.6
Migut.H01604 Erythranthe guttata HOM05D007926 ORTHO05D009983 1.3e-15 86.7 80 47.5
Rhsim13G0146200 Rhododendron simsii HOM05D007926 ORTHO05D009983 1.3e-15 86.7 111 42.3
Prupe.4G010900 Prunus persica HOM05D007926 ORTHO05D009983 1.7e-15 86.3 113 39.8
PGR042G0446 Punica granatum HOM05D007926 ORTHO05D009983 1.7e-15 86.3 112 40.2
Gohir.D10G009100 Gossypium hirsutum HOM05D007926 ORTHO05D009983 2.2e-15 85.9 106 43.4
arahy.Tifrunner.gnm1.ann1.I7SJA3 Arachis hypogaea HOM05D007926 ORTHO05D009983 2.9e-15 85.5 91 42.9
CANSAT56G0946 Cannabis sativa HOM05D007926 ORTHO05D009983 2.9e-15 85.5 106 40.6
CSS0027622 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 3.7e-15 85.1 102 44.1
Eucgr.E03949 Eucalyptus grandis HOM05D007926 ORTHO05D009983 4.9e-15 84.7 101 42.6
Gorai.010G250100 Gossypium raimondii HOM05D007926 ORTHO05D009983 6.4e-15 84.3 111 41.4
Gohir.D06G216000 Gossypium hirsutum HOM05D007926 ORTHO05D009983 3.2e-14 82.0 111 40.5
Manes.09G070200 Manihot esculenta HOM05D007926 ORTHO05D009983 5.4e-14 81.3 106 41.5
PGSC0003DMG400023652 Solanum tuberosum HOM05D007926 ORTHO05D009983 7.0e-14 80.9 100 40.0
MD10G1331300 Malus domestica HOM05D007926 ORTHO05D009983 9.2e-14 80.5 99 43.4
Solyc04g014750.1 Solanum lycopersicum HOM05D007926 ORTHO05D009983 1.6e-13 79.7 107 39.3
Sopen04g006860 Solanum pennellii HOM05D007926 ORTHO05D009983 1.6e-13 79.7 107 39.3
Eucgr.E03934 Eucalyptus grandis HOM05D007926 ORTHO05D009983 2.0e-13 79.3 69 50.7
Glyma.15G114500 Glycine max HOM05D007926 ORTHO05D009983 2.7e-13 79.0 109 37.6
Gohir.A06G205500 Gossypium hirsutum HOM05D007926 ORTHO05D009983 2.7e-13 79.0 111 39.6
Phvul.006G143300 Phaseolus vulgaris HOM05D007926 ORTHO05D009983 2.7e-13 79.0 111 39.6
SGA_v2.0_scaffold89G27497 Striga asiatica HOM05D007926 ORTHO05D009983 4.6e-13 78.2 104 39.4
Nn1g03317 Nelumbo nucifera HOM05D007926 ORTHO05D009983 1.0e-12 77.0 74 48.6
Oeu002767.1 Olea europaea HOM05D007926 ORTHO05D009983 1.3e-12 76.6 102 43.1
ATR0712G022 Amborella trichopoda HOM05D007926 ORTHO05D009983 2.3e-12 75.9 69 47.8
RcHm_v2.0_Chr5g0001551 Rosa chinensis HOM05D007926 ORTHO05D009983 3.0e-12 75.5 98 41.8
AUR62021866 Chenopodium quinoa HOM05D007926 ORTHO05D009983 3.9e-12 75.1 110 38.2
Sc05g0009590 Simmondsia chinensis HOM05D007926 ORTHO05D009983 1.1e-11 73.6 111 39.6
DCAR_002220 Daucus carota HOM05D007926 ORTHO05D009983 1.9e-11 72.8 109 33.9
TPR.G13087 Trifolium pratense HOM05D007926 ORTHO05D009983 1.9e-11 72.8 109 39.4
CSS0041628 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 5.6e-11 71.2 104 37.5
BolC8t49147H Brassica oleracea HOM05D007926 ORTHO05D009983 7.3e-11 70.9 37 89.2
HanXRQChr15g0470111 Helianthus annuus HOM05D007926 ORTHO05D009983 1.8e-09 66.2 89 36.0
Sed0015463 Sechium edule HOM05D007926 ORTHO05D009983 1.8e-09 66.2 110 34.5
CSS0047308 Camellia sinensis var. sinensis HOM05D007926 ORTHO05D009983 2.0e-08 62.8 111 32.4
Lj6g0017055 Lotus japonicus HOM05D007926 ORTHO05D009983 4.4e-08 61.6 93 38.7
DCAR_004887 Daucus carota HOM05D000701 ORTHO05D000531 5.8e-08 61.2 58 41.4
MELO3C021682.2 Cucumis melo HOM05D007926 ORTHO05D009983 1.3e-07 60.1 76 39.5
ClCG01G010240 Citrullus lanatus HOM05D007926 ORTHO05D009983 2.2e-07 59.3 66 42.4
Medtr2g025700 Medicago truncatula HOM05D007926 ORTHO05D009983 5.4e-06 54.7 109 33.9


User provided reference genes

Program Settings