Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p09350 Brassica napus HOM05D009328 ORTHO05D008690 5.4e-237 823.9 418 100.0
BraA06t24123Z Brassica rapa HOM05D009328 ORTHO05D008690 7.1e-229 797.0 418 97.4
C05p11050 Brassica napus HOM05D009328 ORTHO05D008690 1.8e-208 729.2 423 91.0
BolC5t29847H Brassica oleracea HOM05D009328 ORTHO05D008690 2.6e-207 725.3 423 91.0
BcaB02g06406 Brassica carinata HOM05D009328 ORTHO05D008690 8.3e-177 624.0 449 76.8
BcaB02g06408 Brassica carinata HOM05D009328 ORTHO05D008690 6.8e-163 577.8 452 72.6
Sp1g10800 Schrenkiella parvula HOM05D009328 ORTHO05D008690 3.4e-162 575.5 485 68.5
Thhalv10007497m.g Eutrema salsugineum HOM05D009328 ORTHO05D008690 1.7e-158 563.1 489 66.5
BraA09t41754Z Brassica rapa HOM05D009328 ORTHO05D008690 2.5e-157 559.3 428 71.0
A09p64080 Brassica napus HOM05D009328 ORTHO05D008690 5.2e-155 551.6 428 70.6
BcaB03g13206 Brassica carinata HOM05D009328 ORTHO05D008690 9.2e-152 540.8 440 72.0
BcaC07g41729 Brassica carinata HOM05D009328 ORTHO05D008690 2.0e-151 539.7 428 69.6
C08p15230 Brassica napus HOM05D009328 ORTHO05D008690 2.8e-148 529.3 439 69.9
BolC8t49153H Brassica oleracea HOM05D009328 ORTHO05D008690 2.8e-148 529.3 439 69.9
A08p32980 Brassica napus HOM05D009328 ORTHO05D008690 9.8e-146 520.8 438 70.1
BraA08t35218Z Brassica rapa HOM05D009328 ORTHO05D008690 3.7e-145 518.8 438 69.9
Carub.0001s1181 Capsella rubella HOM05D009328 ORTHO05D008690 4.1e-144 515.4 497 63.4
C08p47680 Brassica napus HOM05D009328 ORTHO05D008690 2.3e-142 509.6 432 67.8
AL1G23390 Arabidopsis lyrata HOM05D009328 ORTHO05D008690 5.1e-142 508.4 498 62.4
BolC8t52307H Brassica oleracea HOM05D009328 ORTHO05D008690 1.5e-141 506.9 431 67.7
AT1G12120 Arabidopsis thaliana HOM05D009328 ORTHO05D008690 9.5e-141 504.2 492 63.4
CARHR012480 Cardamine hirsuta HOM05D009328 ORTHO05D008690 1.1e-131 474.2 500 60.2
Aa31LG1G2600 Aethionema arabicum HOM05D009328 ORTHO05D008690 2.6e-90 336.7 507 47.3
BcaNung05495 Brassica carinata HOM05D009328 ORTHO05D008690 3.2e-88 329.7 286 64.3
THA.LOC104818527 Tarenaya hassleriana HOM05D009328 ORTHO05D008690 1.4e-83 314.3 471 49.0
THA.LOC104823548 Tarenaya hassleriana HOM05D009328 ORTHO05D008690 1.0e-78 298.1 492 48.4
Sp2g02060 Schrenkiella parvula HOM05D009328 ORTHO05D008690 3.7e-68 263.1 449 43.4
Thhalv10024007m.g Eutrema salsugineum HOM05D009328 ORTHO05D008690 3.1e-51 206.8 424 40.3
AT1G62530 Arabidopsis thaliana HOM05D009328 ORTHO05D008690 5.6e-48 196.1 421 38.5
Carub.0002s0245 Capsella rubella HOM05D009328 ORTHO05D008690 5.2e-46 189.5 424 38.0
AL2G13340 Arabidopsis lyrata HOM05D009328 ORTHO05D008690 2.6e-37 160.6 252 45.2
BcaNung05497 Brassica carinata HOM05D009328 ORTHO05D008690 3.0e-25 120.6 114 58.8
Thecc.03G256000 Theobroma cacao HOM05D007929 ORTHO05D008690 5.1e-25 119.8 307 35.2
MD04G1085400 Malus domestica HOM05D007929 ORTHO05D008690 1.5e-24 118.2 273 37.0
Manes.01G077200 Manihot esculenta HOM05D007929 ORTHO05D008690 1.5e-24 118.2 277 36.8
COL.COLO4_37202 Corchorus olitorius HOM05D007929 ORTHO05D008690 1.9e-24 117.9 271 35.8
Haze_07866 Corylus avellana HOM05D007929 ORTHO05D008690 3.6e-23 113.6 177 46.9
TWI60G0818 Tripterygium wilfordii HOM05D007929 ORTHO05D008690 8.1e-23 112.5 168 45.8
ClCG01G003880 Citrullus lanatus HOM05D007929 ORTHO05D008690 2.4e-22 110.9 172 43.0
Duzib084G1023 Durio zibethinus HOM05D007929 ORTHO05D008690 8.9e-22 109.0 280 36.8
CsaV3_5G004010 Cucumis sativus L. HOM05D007929 ORTHO05D008690 2.0e-21 107.8 171 42.7
Duzib068G0525 Durio zibethinus HOM05D007929 ORTHO05D008690 2.0e-21 107.8 290 35.2
MD06G1062900 Malus domestica HOM05D007929 ORTHO05D008690 2.0e-21 107.8 272 35.7
Sed0000260 Sechium edule HOM05D007929 ORTHO05D008690 4.4e-21 106.7 161 47.8
Gohir.D08G189300 Gossypium hirsutum HOM05D007929 ORTHO05D008690 5.8e-21 106.3 271 35.4
Cfa021312 Carpinus fangiana HOM05D007929 ORTHO05D008690 7.6e-21 105.9 190 42.6
Sabra03G0077700 Salix brachista HOM05D007929 ORTHO05D008690 7.6e-21 105.9 294 37.8
Dinv39112 Davidia involucrata HOM05D007929 ORTHO05D008690 9.9e-21 105.5 172 43.0
Duzib205G1039 Durio zibethinus HOM05D007929 ORTHO05D008690 9.9e-21 105.5 281 35.2
Potri.003G112000 Populus trichocarpa HOM05D007929 ORTHO05D008690 1.3e-20 105.1 282 35.8
Prupe.5G074300 Prunus persica HOM05D007929 ORTHO05D008690 1.7e-20 104.8 179 43.6
Dinv21608 Davidia involucrata HOM05D007929 ORTHO05D008690 2.2e-20 104.4 255 37.3
Gohir.A08G171000 Gossypium hirsutum HOM05D007929 ORTHO05D008690 2.2e-20 104.4 299 34.4
FAN08G2103 Fragaria x ananassa HOM05D007929 ORTHO05D008690 2.9e-20 104.0 167 44.3
Actinidia05192 Actinidia chinensis HOM05D007929 ORTHO05D008690 3.8e-20 103.6 173 43.4
FAN13G1817 Fragaria x ananassa HOM05D007929 ORTHO05D008690 4.9e-20 103.2 167 44.3
Gorai.004G199400 Gossypium raimondii HOM05D007929 ORTHO05D008690 4.9e-20 103.2 143 48.3
Hma1.2p1_1720F.1_g299295 Hydrangea macrophylla HOM05D007929 ORTHO05D008690 6.4e-20 102.8 169 44.4
Hma1.2p1_1720F.1_g299300 Hydrangea macrophylla HOM05D007929 ORTHO05D008690 6.4e-20 102.8 169 44.4
RcHm_v2.0_Chr7g0202661 Rosa chinensis HOM05D007929 ORTHO05D008690 6.4e-20 102.8 167 42.5
Eucgr.E00452 Eucalyptus grandis HOM05D007929 ORTHO05D008690 8.4e-20 102.4 171 44.4
Sabra01G0093400 Salix brachista HOM05D007929 ORTHO05D008690 8.4e-20 102.4 414 29.7
MELO3C005557.2 Cucumis melo HOM05D007929 ORTHO05D008690 1.1e-19 102.1 171 41.5
CiPaw.12G107500 Carya illinoinensis HOM05D007929 ORTHO05D008690 1.9e-19 101.3 368 31.0
Ciclev10019204m.g Citrus clementina HOM05D007929 ORTHO05D008690 1.9e-19 101.3 349 30.4
Potri.001G121200 Populus trichocarpa HOM05D007929 ORTHO05D008690 1.9e-19 101.3 384 31.2
Hund14599 Selenicereus undatus HOM05D007929 ORTHO05D008690 2.4e-19 100.9 201 39.3
Gohir.A12G219000 Gossypium hirsutum HOM05D007929 ORTHO05D008690 4.1e-19 100.1 309 33.0
Rhsim07G0105500 Rhododendron simsii HOM05D007929 ORTHO05D008690 4.1e-19 100.1 205 38.5
FAN04G0968 Fragaria x ananassa HOM05D007929 ORTHO05D008690 7.1e-19 99.4 167 43.1
Gorai.008G237100 Gossypium raimondii HOM05D007929 ORTHO05D008690 7.1e-19 99.4 309 32.0
Gohir.D12G221300 Gossypium hirsutum HOM05D007929 ORTHO05D008690 2.1e-18 97.8 309 32.0
QL12p013187 Quercus lobata HOM05D007929 ORTHO05D008690 2.7e-18 97.4 284 33.5
Actinidia27458 Actinidia chinensis HOM05D007929 ORTHO05D008690 3.5e-18 97.1 173 43.9
FvH4_5g00200 Fragaria vesca HOM05D007929 ORTHO05D008690 4.6e-18 96.7 254 35.4
FAN18G3609 Fragaria x ananassa HOM05D007929 ORTHO05D008690 4.6e-18 96.7 254 35.4
Manes.02G036501 Manihot esculenta HOM05D007929 ORTHO05D008690 6.0e-18 96.3 263 36.1
DCAR_027794 Daucus carota HOM05D007929 ORTHO05D008690 1.0e-17 95.5 173 40.5
vmacro14098 Vaccinium macrocarpon HOM05D007929 ORTHO05D008690 1.3e-17 95.1 234 34.2
AUR62007484 Chenopodium quinoa HOM05D007929 ORTHO05D008690 1.5e-16 91.7 137 46.0
ECA233G5449 Erigeron canadensis HOM05D007929 ORTHO05D008690 1.5e-16 91.7 185 41.1
AUR62039940 Chenopodium quinoa HOM05D007929 ORTHO05D008690 1.9e-16 91.3 149 45.0
HanXRQChr13g0394961 Helianthus annuus HOM05D007929 ORTHO05D008690 7.3e-16 89.4 227 35.7
EL10Ac5g13019 Beta vulgaris HOM05D007929 ORTHO05D008690 2.8e-15 87.4 141 41.1
Lsat_1_v5_gn_6_1860 Lactuca sativa HOM05D007929 ORTHO05D008690 2.8e-15 87.4 234 38.5
Nn1g01073 Nelumbo nucifera HOM05D007929 ORTHO05D008690 1.1e-14 85.5 179 41.3
Sc22g0000740 Simmondsia chinensis HOM05D007929 ORTHO05D008690 3.1e-14 84.0 311 33.1
Peaxi162Scf00002g00920 Petunia axillaris HOM05D007929 ORTHO05D008690 5.2e-14 83.2 139 39.6
CAN.G1217.13 Capsicum annuum HOM05D007929 ORTHO05D008690 1.2e-13 82.0 163 37.4
arahy.Tifrunner.gnm1.ann1.S80PKI Arachis hypogaea HOM05D007929 ORTHO05D008690 1.5e-13 81.6 204 35.8
Nn6g34027 Nelumbo nucifera HOM05D007929 ORTHO05D008690 3.4e-13 80.5 215 36.3
Oeu029333.1 Olea europaea HOM05D007929 ORTHO05D008690 3.4e-13 80.5 253 33.2
Solyc08g079030.4 Solanum lycopersicum HOM05D007929 ORTHO05D008690 7.6e-13 79.3 126 43.7
Ah.12g056550 Amaranthus hybridus HOM05D007929 ORTHO05D008690 1.3e-12 78.6 160 37.5
MSTRG.25535 Avicennia marina HOM05D007929 ORTHO05D008690 3.8e-12 77.0 173 35.8
Nitab4.5_0009716g0010 Nicotiana tabacum HOM05D007929 ORTHO05D008690 4.9e-12 76.6 239 30.5
MBI04_g37591_MAGBIO Magnolia biondii HOM05D007929 ORTHO05D008690 1.1e-11 75.5 193 35.2
Sopen08g027490 Solanum pennellii HOM05D007929 ORTHO05D008690 1.1e-11 75.5 240 32.1
Nitab4.5_0000993g0050 Nicotiana tabacum HOM05D007929 ORTHO05D008690 1.2e-10 72.0 277 28.5
PGSC0003DMG400004743 Solanum tuberosum HOM05D007929 ORTHO05D008690 3.5e-10 70.5 260 29.2
HPP92_015027 Vanilla planifolia HOM05D007929 ORTHO05D008690 1.3e-09 68.6 83 50.6
Migut.A00812 Erythranthe guttata HOM05D007929 ORTHO05D008690 8.7e-09 65.9 348 29.0
TAR374G1634 Trochodendron aralioides HOM05D007929 ORTHO05D008690 1.5e-08 65.1 168 34.5
Actinidia04855 Actinidia chinensis HOM05D001536 ORTHO05D001442 1.9e-08 64.7 280 23.2
Cc08_g12850 Coffea canephora HOM05D007929 ORTHO05D008690 1.9e-08 64.7 202 31.7
Hma1.2p1_0060F.1_g033420 Hydrangea macrophylla HOM05D001536 ORTHO05D001442 7.3e-08 62.8 203 30.0
Actinidia09237 Actinidia chinensis HOM05D000001 ORTHO05D000003 9.6e-08 62.4 191 27.2
AUR62021612 Chenopodium quinoa HOM05D001536 ORTHO05D001442 1.3e-07 62.0 313 27.5
AUR62008481 Chenopodium quinoa HOM05D001536 ORTHO05D001442 2.1e-07 61.2 313 25.9
HPP92_007417 Vanilla planifolia HOM05D007929 ORTHO05D008690 2.8e-07 60.8 344 26.7
Dinv11493 Davidia involucrata HOM05D001536 ORTHO05D001442 3.6e-07 60.5 211 29.4
EL10Ac5g11082 Beta vulgaris HOM05D001536 ORTHO05D001442 1.1e-06 58.9 286 27.3
FAN14G2903 Fragaria x ananassa HOM05D001536 ORTHO05D001442 1.1e-06 58.9 143 32.2
SGA_v2.0_scaffold287G47150 Striga asiatica HOM05D001536 ORTHO05D001442 1.1e-06 58.9 426 23.2
Duzib147G0949 Durio zibethinus HOM05D001536 ORTHO05D001442 1.8e-06 58.2 82 39.0
MD06G1199000 Malus domestica HOM05D001536 ORTHO05D001442 1.8e-06 58.2 112 38.4
Ah.11g048120 Amaranthus hybridus HOM05D001536 ORTHO05D001442 2.4e-06 57.8 331 26.3
Gorai.003G099300 Gossypium raimondii HOM05D001536 ORTHO05D001442 3.1e-06 57.4 82 37.8
QL10p018539 Quercus lobata HOM05D001536 ORTHO05D001442 4.0e-06 57.0 285 24.9
Aqoxy3G00455 Aquilegia oxysepala HOM05D001536 ORTHO05D001442 6.9e-06 56.2 157 28.7
Haze_07670 Corylus avellana HOM05D001536 ORTHO05D001442 6.9e-06 56.2 82 37.8
SGA_v2.0_scaffold63G21635 Striga asiatica HOM05D001536 ORTHO05D001442 6.9e-06 56.2 174 31.6
GSVIVG01011481001 Vitis vinifera HOM05D001536 ORTHO05D001442 9.0e-06 55.8 104 33.7


User provided reference genes

Program Settings